mRNA_P-wetherbeei_contig2023.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2023.1.1
Unique NamemRNA_P-wetherbeei_contig2023.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2023.1.1 vs. uniprot
Match: D7G577_ECTSI (Autophagy-related protein 18 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G577_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 8.390e-57
Identity = 88/134 (65.67%), Postives = 113/134 (84.33%), Query Frame = 1 
Query:   31 ARDILFYGFNQDATCLTLGLRSGYRIYSCRPFVRRLAVAEGGVGLVEMLFCTSLVALVGAGDRPAFSPRLLRLWNTKRAQTVCETNLVTAVLAVRLNRRRVVVCLERALFICDISNMACLQTLETTPNPNGIVA 432
            +++IL YGFNQDATCL +GLR+GYRIY+CRPF +  A+ +GG+G  EMLF +SLVALVG+GDRPAFSPR L LWNTK+  ++CE N +TAVLAV+LNR+RV VCL+ AL + DIS+M CL+TLET PNP+G++A
Sbjct:    8 SKEILCYGFNQDATCLAVGLRTGYRIYTCRPFAQCFAMTDGGIGRAEMLFSSSLVALVGSGDRPAFSPRRLCLWNTKKDHSICEVNFLTAVLAVKLNRKRVAVCLKTALHVFDISDMKCLRTLETAPNPDGVMA 141
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BLAST of mRNA_P-wetherbeei_contig2023.1.1 vs. uniprot
Match: A0A835Z475_9STRA (Autophagy-related protein 18 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z475_9STRA)

HSP 1 Score: 174 bits (441), Expect = 1.480e-50
Identity = 87/127 (68.50%), Postives = 99/127 (77.95%), Query Frame = 1 
Query:   55 FNQDATCLTLGLRSGYRIYSCRPFVRRLAVAEGGVGLVEMLFCTSLVALVGAGDRPAFSPRLLRLWNTKRAQTVCETNLVTAVLAVRLNRRRVVVCLERALFICDIS-NMACLQTLETTPNPNGIVA 432
            FNQDATCL LGLR G+RIY C PFV+R +   GG+  VEMLFCTSLVALVG GD+PAFSPR LRLW+T++   +CE N VTAVLAVRLNRRRVVV LERAL + DI+  M CL TL T PNP  +VA
Sbjct:    2 FNQDATCLVLGLRGGFRIYDCSPFVQRFSTGGGGLLHVEMLFCTSLVALVGGGDQPAFSPRRLRLWDTRKRAALCELNFVTAVLAVRLNRRRVVVALERALHVFDITCAMKCLHTLATVPNPRAVVA 128
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BLAST of mRNA_P-wetherbeei_contig2023.1.1 vs. uniprot
Match: A0A0L0HM24_SPIPD (Uncharacterized protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HM24_SPIPD)

HSP 1 Score: 168 bits (425), Expect = 3.860e-48
Identity = 77/132 (58.33%), Postives = 103/132 (78.03%), Query Frame = 1 
Query:   37 DILFYGFNQDATCLTLGLRSGYRIYSCRPFVRRLAVAEGGVGLVEMLFCTSLVALVGAGDRPAFSPRLLRLWNTKRAQTVCETNLVTAVLAVRLNRRRVVVCLERALFICDISNMACLQTLETTPNPNGIVA 432
            ++LF  FNQD +C+++G R GY+IY+C P  +     EGG+G+VEMLFCTSLVALVGAG++PAFSPR L++ NTKR  T+CE   VTA+LAV+LNR+R+VV LE  ++I DISNM  L T++T+PNPN + A
Sbjct:   10 ELLFINFNQDFSCISVGTRHGYKIYNCDPIGKCYGKTEGGIGIVEMLFCTSLVALVGAGEQPAFSPRRLQITNTKRQSTICELTFVTAILAVKLNRKRLVVVLEEHIYIYDISNMKLLHTIDTSPNPNALCA 141
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BLAST of mRNA_P-wetherbeei_contig2023.1.1 vs. uniprot
Match: A0A139A4L9_GONPJ (WD40 repeat-like protein n=1 Tax=Gonapodya prolifera (strain JEL478) TaxID=1344416 RepID=A0A139A4L9_GONPJ)

HSP 1 Score: 169 bits (427), Expect = 5.500e-48
Identity = 80/132 (60.61%), Postives = 102/132 (77.27%), Query Frame = 1 
Query:   31 ARDILFYGFNQDATCLTLGLRSGYRIYSCRPFVRRLAVAEGGVGLVEMLFCTSLVALVGAGDRPAFSPRLLRLWNTKRAQTVCETNLVTAVLAVRLNRRRVVVCLERALFICDISNMACLQTLETTPNPNGI 426
            A DILF  FNQD +C+++G R GY+IY+C PF +     +GG+G+VEMLF TSLVALVGAG++PAFSPR L+L NTKR  T+CE   VTA+LAV+LNRRR+VV LE  ++I DISNM  L T++T PNPN +
Sbjct:    7 ASDILFVNFNQDFSCVSVGTRHGYKIYNCDPFGKCYGKTDGGIGIVEMLFSTSLVALVGAGEQPAFSPRRLQLTNTKRQSTICELTFVTAILAVKLNRRRLVVVLEEHIYIYDISNMKLLHTIDTNPNPNAL 138
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BLAST of mRNA_P-wetherbeei_contig2023.1.1 vs. uniprot
Match: A0A3R7JCW7_9STRA (Uncharacterized protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7JCW7_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.100e-47
Identity = 75/130 (57.69%), Postives = 100/130 (76.92%), Query Frame = 1 
Query:   37 DILFYGFNQDATCLTLGLRSGYRIYSCRPFVRRLAVAEGGVGLVEMLFCTSLVALVGAGDRPAFSPRLLRLWNTKRAQTVCETNLVTAVLAVRLNRRRVVVCLERALFICDISNMACLQTLETTPNPNGI 426
            D+LF  FNQ+A+C+++G R G+ IY+C PF +      GG+G+ EML+CTSLVALVGAGD+PAFSPR LR+WNTK    +C+ N VTAVLAVR+NR+R+V  LER ++I DIS M  L+TL+T+PNP  +
Sbjct:   10 DLLFLSFNQEASCISVGTRQGFGIYNCEPFGKCFQENIGGIGIAEMLYCTSLVALVGAGDQPAFSPRRLRVWNTKTGAAICDLNFVTAVLAVRMNRQRLVAVLERKIYIFDISTMKILETLDTSPNPKAL 139
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BLAST of mRNA_P-wetherbeei_contig2023.1.1 vs. uniprot
Match: A0A5D6Y4M8_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y4M8_9STRA)

HSP 1 Score: 168 bits (425), Expect = 1.360e-47
Identity = 75/131 (57.25%), Postives = 104/131 (79.39%), Query Frame = 1 
Query:   34 RDILFYGFNQDATCLTLGLRSGYRIYSCRPFVRRLAVAEGGVGLVEMLFCTSLVALVGAGDRPAFSPRLLRLWNTKRAQTVCETNLVTAVLAVRLNRRRVVVCLERALFICDISNMACLQTLETTPNPNGI 426
            RD+LF  FNQDATC+++G R G+ +++C PF R      GG+G+ EML+CTSLVALVGAG++PAFSPR LR+WNTK +  +C+ N VTAVLAVR+NR+R+V  LER ++I DI++M  L+TL+T+PNP+ +
Sbjct:   17 RDLLFLSFNQDATCISVGTREGFGVFNCEPFGRCFHEPLGGIGVAEMLYCTSLVALVGAGEQPAFSPRRLRVWNTKTSAAICDLNFVTAVLAVRMNRQRLVAVLERKIYIFDINSMKILETLDTSPNPSAL 147
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BLAST of mRNA_P-wetherbeei_contig2023.1.1 vs. uniprot
Match: H3GM26_PHYRM (Uncharacterized protein n=62 Tax=Peronosporaceae TaxID=4777 RepID=H3GM26_PHYRM)

HSP 1 Score: 167 bits (422), Expect = 3.020e-47
Identity = 74/130 (56.92%), Postives = 100/130 (76.92%), Query Frame = 1 
Query:   37 DILFYGFNQDATCLTLGLRSGYRIYSCRPFVRRLAVAEGGVGLVEMLFCTSLVALVGAGDRPAFSPRLLRLWNTKRAQTVCETNLVTAVLAVRLNRRRVVVCLERALFICDISNMACLQTLETTPNPNGI 426
            D+LF  FNQ+A+C+++G R G+ IY+C PF +      GG+G+ EML+CTSLVALVGAGD+PAFSPR LR+WNTK    +C+ N VTAVLAVR+NR+R++  LER ++I DIS M  L+TL+T+PNP  +
Sbjct:   10 DLLFLNFNQEASCISVGTRQGFAIYNCEPFGKCFQEVIGGIGIAEMLYCTSLVALVGAGDQPAFSPRRLRVWNTKTGSAICDLNFVTAVLAVRMNRQRLIAVLERKIYIFDISTMKILETLDTSPNPKAL 139
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BLAST of mRNA_P-wetherbeei_contig2023.1.1 vs. uniprot
Match: A0A137PB51_CONC2 (WD40 repeat-like protein n=1 Tax=Conidiobolus coronatus (strain ATCC 28846 / CBS 209.66 / NRRL 28638) TaxID=796925 RepID=A0A137PB51_CONC2)

HSP 1 Score: 165 bits (418), Expect = 6.050e-47
Identity = 77/138 (55.80%), Postives = 104/138 (75.36%), Query Frame = 1 
Query:   19 SALPARDILFYGFNQDATCLTLGLRSGYRIYSCRPFVRRLAVAEGGVGLVEMLFCTSLVALVGAGDRPAFSPRLLRLWNTKRAQTVCETNLVTAVLAVRLNRRRVVVCLERALFICDISNMACLQTLETTPNPNGIVA 432
            S+    ++LF  FNQD +C+++G ++GYRI++C PF +     EGG+G+VEMLFCTSLVALVGAG++PAFSPR L++ NTKR   +CE    T++L V+LNRRR++V LE  +FI DISNM  L T+ET+PNPN I A
Sbjct:    4 SSKTTNELLFINFNQDYSCISVGTKNGYRIFNCDPFGKCFEKNEGGIGVVEMLFCTSLVALVGAGEQPAFSPRRLQISNTKRESVICELTFPTSILGVKLNRRRLIVILEDQIFIYDISNMKLLHTIETSPNPNAICA 141
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BLAST of mRNA_P-wetherbeei_contig2023.1.1 vs. uniprot
Match: A0A067D7H9_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D7H9_SAPPC)

HSP 1 Score: 164 bits (415), Expect = 1.190e-46
Identity = 74/133 (55.64%), Postives = 100/133 (75.19%), Query Frame = 1 
Query:   28 PARDILFYGFNQDATCLTLGLRSGYRIYSCRPFVRRLAVAEGGVGLVEMLFCTSLVALVGAGDRPAFSPRLLRLWNTKRAQTVCETNLVTAVLAVRLNRRRVVVCLERALFICDISNMACLQTLETTPNPNGI 426
            P   +L+  FNQDATC+++G R G+ +YSC PF R    A GG+G+ +MLF TSLV LVGAG++PAFSPR LR+WNTK +  +C+ N VTAVL+V+LNR+R+VV LER ++I DI++M  L TL+T PNP  +
Sbjct:   10 PESQVLYVSFNQDATCISVGTRQGFFVYSCEPFGRSFHEASGGIGIAQMLFSTSLVVLVGAGEQPAFSPRRLRVWNTKTSAAICDLNFVTAVLSVQLNRQRLVVVLERKIYIFDINSMQVLNTLDTAPNPKAL 142
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BLAST of mRNA_P-wetherbeei_contig2023.1.1 vs. uniprot
Match: A0A8H7Q944_9FUNG (Uncharacterized protein n=2 Tax=Umbelopsis TaxID=64561 RepID=A0A8H7Q944_9FUNG)

HSP 1 Score: 165 bits (418), Expect = 1.280e-46
Identity = 71/131 (54.20%), Postives = 107/131 (81.68%), Query Frame = 1 
Query:   31 ARDILFYGFNQDATCLTLGLRSGYRIYSCRPFVRRLAVAEGGVGLVEMLFCTSLVALVGAGDRPAFSPRLLRLWNTKRAQTVCETNLVTAVLAVRLNRRRVVVCLERALFICDISNMACLQTLETTPNPNG 423
            + ++LF  FNQD +C+++G+++GY+IY+C PF +  + ++GG+G+VEMLFCTSLVALVGAG++PAFSPR L++ NTKR  T+CE    T++L+V++NRRR++V LE  +F+ DISNM  L T++T+PNP+G
Sbjct:    8 SNELLFINFNQDFSCISVGIKNGYKIYNCDPFGKCYSKSDGGIGIVEMLFCTSLVALVGAGEQPAFSPRHLQIINTKRQSTICELTFPTSILSVKMNRRRLIVVLEEQIFVYDISNMKLLHTIDTSPNPSG 138
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2023.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G577_ECTSI8.390e-5765.67Autophagy-related protein 18 n=2 Tax=Ectocarpus Ta... [more]
A0A835Z475_9STRA1.480e-5068.50Autophagy-related protein 18 (Fragment) n=1 Tax=Tr... [more]
A0A0L0HM24_SPIPD3.860e-4858.33Uncharacterized protein n=2 Tax=Spizellomyces TaxI... [more]
A0A139A4L9_GONPJ5.500e-4860.61WD40 repeat-like protein n=1 Tax=Gonapodya prolife... [more]
A0A3R7JCW7_9STRA1.100e-4757.69Uncharacterized protein n=2 Tax=Phytophthora kerno... [more]
A0A5D6Y4M8_9STRA1.360e-4757.25Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
H3GM26_PHYRM3.020e-4756.92Uncharacterized protein n=62 Tax=Peronosporaceae T... [more]
A0A137PB51_CONC26.050e-4755.80WD40 repeat-like protein n=1 Tax=Conidiobolus coro... [more]
A0A067D7H9_SAPPC1.190e-4655.64Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A8H7Q944_9FUNG1.280e-4654.20Uncharacterized protein n=2 Tax=Umbelopsis TaxID=6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2023contigP-wetherbeei_contig2023:2..433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G577
Preferred nameATG18
PFAMsWD40
Model size432
Max annot lvl2759|Eukaryota
KEGG koko:K17908
KEGG TC9.A.15.1
KEGG Pathwayko04136,ko04138,ko04140,map04136,map04138,map04140
Hectar predicted targeting categoryother localisation
GOsGO:0000045,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000407,GO:0000422,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005773,GO:0005774,GO:0005829,GO:0005942,GO:0006464,GO:0006497,GO:0006508,GO:0006605,GO:0006623,GO:0006624,GO:0006807,GO:0006810,GO:0006886,GO:0006914,GO:0006996,GO:0007005,GO:0007033,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0016237,GO:0016485,GO:0019538,GO:0019898,GO:0022411,GO:0022607,GO:0030242,GO:0031090,GO:0031410,GO:0031982,GO:0032182,GO:0032258,GO:0032266,GO:0032991,GO:0033036,GO:0033365,GO:0034045,GO:0034497,GO:0034613,GO:0034645,GO:0034727,GO:0035032,GO:0035091,GO:0036211,GO:0042157,GO:0042158,GO:0042886,GO:0043130,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0044804,GO:0044805,GO:0045184,GO:0045324,GO:0046907,GO:0051179,GO:0051234,GO:0051604,GO:0051641,GO:0051649,GO:0061695,GO:0061726,GO:0061919,GO:0070727,GO:0070772,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072665,GO:0072666,GO:0080025,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:0098852,GO:1901564,GO:1901566,GO:1901576,GO:1901981,GO:1902494,GO:1902936,GO:1903008,GO:1905037,GO:1990234
Exons1
Evalue1.38e-57
EggNOG OGsKOG2110@1|root,KOG2110@2759|Eukaryota
Descriptionphosphatidylinositol-3,5-bisphosphate binding
Cds size432
COG categoryS
BRITEko00000,ko00001,ko02000,ko03029,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186193.976767-CDS-P-wetherbeei_contig2023:1..4331683186193.976767-CDS-P-wetherbeei_contig2023:1..433Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2023 2..433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2023.1.1prot_P-wetherbeei_contig2023.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2023 2..433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2023.1.1

>prot_P-wetherbeei_contig2023.1.1 ID=prot_P-wetherbeei_contig2023.1.1|Name=mRNA_P-wetherbeei_contig2023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=144bp
MVRAQTSALPARDILFYGFNQDATCLTLGLRSGYRIYSCRPFVRRLAVAE
GGVGLVEMLFCTSLVALVGAGDRPAFSPRLLRLWNTKRAQTVCETNLVTA
VLAVRLNRRRVVVCLERALFICDISNMACLQTLETTPNPNGIVA
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mRNA from alignment at P-wetherbeei_contig2023:2..433-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2023.1.1 ID=mRNA_P-wetherbeei_contig2023.1.1|Name=mRNA_P-wetherbeei_contig2023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig2023:2..433- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTAAGAGCTCAAACCTCGGCCTTGCCCGCACGAGACATTCTTTTCTA
CGGCTTCAACCAGGACGCCACGTGCCTGACGCTCGGCCTGCGCTCTGGCT
ACCGCATCTACAGCTGCCGGCCGTTCGTGCGCCGCCTTGCCGTCGCCGAG
GGCGGCGTCGGCCTCGTCGAGATGCTCTTCTGCACGAGCCTCGTCGCTCT
CGTCGGCGCCGGTGACCGCCCGGCCTTCAGCCCGCGCCTGCTTCGCCTCT
GGAACACCAAGCGCGCCCAGACGGTGTGCGAGACGAACTTAGTGACGGCG
GTGCTCGCCGTGCGCCTGAACCGCCGCCGCGTCGTCGTCTGCCTCGAGCG
GGCGCTCTTCATCTGCGACATTTCCAACATGGCTTGCCTGCAGACGCTGG
AGACAACGCCGAACCCCAACGGCATCGTCGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2023:2..433-

>mRNA_P-wetherbeei_contig2023.1.1 ID=mRNA_P-wetherbeei_contig2023.1.1|Name=mRNA_P-wetherbeei_contig2023.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=432bp|location=Sequence derived from alignment at P-wetherbeei_contig2023:2..433- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTAAGAGCTCAAACCTCGGCCTTGCCCGCACGAGACATTCTTTTCTA
CGGCTTCAACCAGGACGCCACGTGCCTGACGCTCGGCCTGCGCTCTGGCT
ACCGCATCTACAGCTGCCGGCCGTTCGTGCGCCGCCTTGCCGTCGCCGAG
GGCGGCGTCGGCCTCGTCGAGATGCTCTTCTGCACGAGCCTCGTCGCTCT
CGTCGGCGCCGGTGACCGCCCGGCCTTCAGCCCGCGCCTGCTTCGCCTCT
GGAACACCAAGCGCGCCCAGACGGTGTGCGAGACGAACTTAGTGACGGCG
GTGCTCGCCGTGCGCCTGAACCGCCGCCGCGTCGTCGTCTGCCTCGAGCG
GGCGCTCTTCATCTGCGACATTTCCAACATGGCTTGCCTGCAGACGCTGG
AGACAACGCCGAACCCCAACGGCATCGTCGCC
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