mRNA_P-wetherbeei_contig202.3.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig202.3.1
Unique NamemRNA_P-wetherbeei_contig202.3.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig202.3.1 vs. uniprot
Match: A0A836CL99_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL99_9STRA)

HSP 1 Score: 124 bits (311), Expect = 3.130e-27
Identity = 91/245 (37.14%), Postives = 113/245 (46.12%), Query Frame = 2 
Query:   23 ILRIPSRTWAPYSSMYAIASAHRQAPAFLKTAEKHFAGLSENPARLLETFCLAVHLSGLRP----HPYAALLSDRSGGH-----------PLLMADVE-LAPLEASPAAEQIRRRARFYTRLHAALLGGDGXXXXXXXXVDGSNCQXXXXXXXXVPLRSFLGAVGAILSRATSAG--PLALVPYLDFLNHCN-DPNCSIEYDDAMKTYVVVAERDCAPFEELFIDYGAGKKGAYQFLRTYGFGGL 700
            +LR+P   W P S  +A   A  +APAF +      A +            LA+  +        H YA L+   + G            PL  A  E L  L+ASP A+ IRRRA  Y R+HAAL  G                            R+F+G V  +LSRATS G  P ALVPY D LNH    P+C+  ++ A  +Y V A RD AP EEL IDYGA  KG YQ +RTYGF  L
Sbjct:   62 VLRVPPEVWLPCSGEFAQQQAASRAPAFARRLHALHARVDSPHLAHTAALALALQFAAAAEADPLHTYARLICGGAMGEGVERGSGPPPLPLARASAESLEHLQASPLAQDIRRRAAAYERIHAALFQGSPLESDERAR------------------RAFVGNVALLLSRATSGGGMPFALVPYFDMLNHAAAPPSCAQAFEAATGSYTVTALRDHAPGEELLIDYGARAKGVYQMVRTYGFADL 288
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig202.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CL99_9STRA3.130e-2737.14SET domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig202contigP-wetherbeei_contig202:10786..12356 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog4792.ETI49945
PFAMsRubis-subs-bind,SET
Model size1444
Max annot lvl4776|Peronosporales
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
Hectar predicted targeting categoryother localisation
Exons2
Evalue3.93e-08
EggNOG OGsKOG1337@1|root,KOG1337@2759|Eukaryota,3QC07@4776|Peronosporales
EC2.1.1.43
Descriptionpeptidyl-lysine monomethylation
Cds size1323
COG categoryS
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186193.3756053-UTR-P-wetherbeei_contig202:10785..108421683186193.3756053-UTR-P-wetherbeei_contig202:10785..10842Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig202 10786..10842 -
1683186193.396245-UTR-P-wetherbeei_contig202:12165..121801683186193.396245-UTR-P-wetherbeei_contig202:12165..12180Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig202 12166..12180 -
1683186193.4031634-UTR-P-wetherbeei_contig202:12307..123561683186193.4031634-UTR-P-wetherbeei_contig202:12307..12356Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig202 12308..12356 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186193.3857152-CDS-P-wetherbeei_contig202:10842..121651683186193.3857152-CDS-P-wetherbeei_contig202:10842..12165Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig202 10843..12165 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig202.3.1prot_P-wetherbeei_contig202.3.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig202 10843..12165 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig202.3.1

>prot_P-wetherbeei_contig202.3.1 ID=prot_P-wetherbeei_contig202.3.1|Name=mRNA_P-wetherbeei_contig202.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=441bp
MYAIASAHRQAPAFLKTAEKHFAGLSENPARLLETFCLAVHLSGLRPHPY
AALLSDRSGGHPLLMADVELAPLEASPAAEQIRRRARFYTRLHAALLGGD
GDGGGGGGGVDGSNCQSSGGGGGGVPLRSFLGAVGAILSRATSAGPLALV
PYLDFLNHCNDPNCSIEYDDAMKTYVVVAERDCAPFEELFIDYGAGKKGA
YQFLRTYGFGGLPSELLPGPAKVLVHRPGDELVLPLLLPPSLSPPESDAA
AAAAETGPEAAFGAAATAAPHDRSSNGGDGDTAWRLPVRFVADVGGPTLP
PPALLDREIDASSGDAGRRGGSSAATLQRQSARAHRERRLQRLQELEAAV
ETALAGYIVPLKEDLRWLRGGEAMRTSYKDDAAASKKTGLHGTVAAADLG
WERQCHMVRAGEKAELVAALRGVQLLRARLAEADAIGQNE*
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mRNA from alignment at P-wetherbeei_contig202:10786..12356-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig202.3.1 ID=mRNA_P-wetherbeei_contig202.3.1|Name=mRNA_P-wetherbeei_contig202.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1571bp|location=Sequence derived from alignment at P-wetherbeei_contig202:10786..12356- (Phaeothamnion wetherbeei SAG_119_79)
CGAAATACGGAAAGGAGCACACATATTACGGATTCCTTCACGGACTTGGG
TAAGGTATTGTATAGTACTGCAAGAAGCAGCACCTCGTAGCGCTCACTGA
TCTAAACATGCACCGCCAACCCTGTCTTCTTATTTTTCCGCGGTTTCCTT
CCTTATCTGGCATTATCTTTGTTCAGGCGCCTTACAGCAGCATGTACGCC
ATAGCCAGCGCACACCGGCAAGCGCCGGCGTTCTTGAAGACCGCTGAAAA
GCACTTTGCGGGGCTGTCAGAGAATCCGGCGCGTCTCTTGGAAACCTTCT
GCCTCGCGGTCCACTTGAGCGGTTTGCGGCCTCATCCTTACGCCGCGCTT
CTCAGCGACCGTTCCGGTGGTCATCCGCTGCTGATGGCTGATGTTGAGCT
GGCGCCTCTTGAAGCAAGCCCTGCCGCCGAACAGATCCGTCGCCGGGCCC
GCTTCTACACTCGGCTGCATGCGGCCCTCCTCGGCGGCGACGGCGATGGC
GGCGGCGGCGGCGGTGGCGTCGATGGCAGCAACTGCCAGAGCAGCGGTGG
CGGCGGCGGCGGTGTTCCCTTACGCAGCTTTCTCGGCGCCGTCGGCGCAA
TCCTGTCGCGGGCGACCTCGGCCGGCCCGCTGGCGCTCGTCCCCTATCTC
GACTTTCTCAACCACTGCAACGACCCGAACTGCAGCATAGAGTACGACGA
TGCGATGAAAACCTACGTTGTGGTGGCGGAGCGGGACTGTGCGCCCTTCG
AAGAGCTCTTCATCGACTACGGAGCTGGAAAGAAAGGAGCATATCAGTTT
TTGCGTACCTACGGATTCGGCGGGCTGCCGTCGGAGTTGCTGCCGGGCCC
GGCGAAAGTGTTGGTGCATCGGCCCGGGGATGAGCTGGTGTTGCCGCTGT
TGCTGCCGCCGTCGCTCTCGCCACCGGAAAGCGACGCTGCCGCCGCTGCG
GCAGAGACGGGGCCGGAAGCGGCATTTGGAGCAGCAGCGACGGCGGCACC
CCACGACCGCAGTAGCAACGGCGGTGATGGGGACACTGCTTGGCGCCTGC
CAGTGCGTTTTGTGGCGGACGTTGGCGGGCCAACGCTGCCACCACCAGCT
CTTCTCGACAGGGAGATCGACGCTTCTTCCGGCGACGCGGGGCGCCGCGG
CGGGAGTAGCGCAGCAACCCTTCAGCGGCAGTCCGCACGTGCCCACCGAG
AGCGGCGGTTGCAGCGTTTACAGGAGCTGGAGGCTGCCGTAGAGACAGCG
CTCGCCGGATACATCGTGCCGTTAAAGGAAGACTTGCGGTGGCTCAGGGG
TGGTGAGGCGATGCGAACTTCCTATAAGGATGACGCCGCTGCATCAAAGA
AGACAGGGTTGCATGGCACTGTCGCCGCAGCCGATCTCGGCTGGGAACGC
CAGTGCCATATGGTGAGGGCGGGCGAGAAAGCGGAGCTCGTGGCCGCGCT
GCGAGGAGTGCAGCTGCTGCGCGCTCGTCTTGCTGAAGCAGACGCCATAG
GCCAAAATGAATAAACAATCTCTGGACAAAGTCATCTTTTGATCACTGTC
ATCTGCCCGGCGGATAGAAAC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig202:10786..12356-

>mRNA_P-wetherbeei_contig202.3.1 ID=mRNA_P-wetherbeei_contig202.3.1|Name=mRNA_P-wetherbeei_contig202.3.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1323bp|location=Sequence derived from alignment at P-wetherbeei_contig202:10786..12356- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACGCCATAGCCAGCGCACACCGGCAAGCGCCGGCGTTCTTGAAGAC
CGCTGAAAAGCACTTTGCGGGGCTGTCAGAGAATCCGGCGCGTCTCTTGG
AAACCTTCTGCCTCGCGGTCCACTTGAGCGGTTTGCGGCCTCATCCTTAC
GCCGCGCTTCTCAGCGACCGTTCCGGTGGTCATCCGCTGCTGATGGCTGA
TGTTGAGCTGGCGCCTCTTGAAGCAAGCCCTGCCGCCGAACAGATCCGTC
GCCGGGCCCGCTTCTACACTCGGCTGCATGCGGCCCTCCTCGGCGGCGAC
GGCGATGGCGGCGGCGGCGGCGGTGGCGTCGATGGCAGCAACTGCCAGAG
CAGCGGTGGCGGCGGCGGCGGTGTTCCCTTACGCAGCTTTCTCGGCGCCG
TCGGCGCAATCCTGTCGCGGGCGACCTCGGCCGGCCCGCTGGCGCTCGTC
CCCTATCTCGACTTTCTCAACCACTGCAACGACCCGAACTGCAGCATAGA
GTACGACGATGCGATGAAAACCTACGTTGTGGTGGCGGAGCGGGACTGTG
CGCCCTTCGAAGAGCTCTTCATCGACTACGGAGCTGGAAAGAAAGGAGCA
TATCAGTTTTTGCGTACCTACGGATTCGGCGGGCTGCCGTCGGAGTTGCT
GCCGGGCCCGGCGAAAGTGTTGGTGCATCGGCCCGGGGATGAGCTGGTGT
TGCCGCTGTTGCTGCCGCCGTCGCTCTCGCCACCGGAAAGCGACGCTGCC
GCCGCTGCGGCAGAGACGGGGCCGGAAGCGGCATTTGGAGCAGCAGCGAC
GGCGGCACCCCACGACCGCAGTAGCAACGGCGGTGATGGGGACACTGCTT
GGCGCCTGCCAGTGCGTTTTGTGGCGGACGTTGGCGGGCCAACGCTGCCA
CCACCAGCTCTTCTCGACAGGGAGATCGACGCTTCTTCCGGCGACGCGGG
GCGCCGCGGCGGGAGTAGCGCAGCAACCCTTCAGCGGCAGTCCGCACGTG
CCCACCGAGAGCGGCGGTTGCAGCGTTTACAGGAGCTGGAGGCTGCCGTA
GAGACAGCGCTCGCCGGATACATCGTGCCGTTAAAGGAAGACTTGCGGTG
GCTCAGGGGTGGTGAGGCGATGCGAACTTCCTATAAGGATGACGCCGCTG
CATCAAAGAAGACAGGGTTGCATGGCACTGTCGCCGCAGCCGATCTCGGC
TGGGAACGCCAGTGCCATATGGTGAGGGCGGGCGAGAAAGCGGAGCTCGT
GGCCGCGCTGCGAGGAGTGCAGCTGCTGCGCGCTCGTCTTGCTGAAGCAG
ACGCCATAGGCCAAAATGAATAA
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