mRNA_P-wetherbeei_contig202.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig202.2.1
Unique NamemRNA_P-wetherbeei_contig202.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig202.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig202contigP-wetherbeei_contig202:1617..3993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1761
Hectar predicted targeting categoryother localisation
Exons4
Cds size1689
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186193.3156314-CDS-P-wetherbeei_contig202:1616..29481683186193.3156314-CDS-P-wetherbeei_contig202:1616..2948Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig202 1617..2948 -
1683186193.3248975-CDS-P-wetherbeei_contig202:3212..33201683186193.3248975-CDS-P-wetherbeei_contig202:3212..3320Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig202 3213..3320 -
1683186193.3344243-CDS-P-wetherbeei_contig202:3576..36601683186193.3344243-CDS-P-wetherbeei_contig202:3576..3660Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig202 3577..3660 -
1683186193.3453326-CDS-P-wetherbeei_contig202:3758..39231683186193.3453326-CDS-P-wetherbeei_contig202:3758..3923Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig202 3759..3923 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186193.3528438-UTR-P-wetherbeei_contig202:3923..39931683186193.3528438-UTR-P-wetherbeei_contig202:3923..3993Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig202 3924..3993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig202.2.1prot_P-wetherbeei_contig202.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig202 1617..3923 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig202.2.1

>prot_P-wetherbeei_contig202.2.1 ID=prot_P-wetherbeei_contig202.2.1|Name=mRNA_P-wetherbeei_contig202.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=563bp
MTGSFEAPVSPSSSSLAQLDEEVAAFRLESQAVLSAGSPRVSTFGAQDDE
DHEPAGELDELEHELDLLESVNAALYNAVMSTKVMSARKVPSFHRRVLPG
GNLRLHSEDKTSQGPESSQQLEANLDASTRRLRLKVAELEVHKAQLAARG
KEERRSRRHRHHHSRSRADGTTDPADTVSAVAAAAVADPSPTGGSASTRS
VPTAHTRDAATAAAAVSARTGSWHHRSKERAAPAGISPLDGNSVSDPAAR
SAAEHLMRDAAAGRGDGGQRDRASSRVHSRDGNGHPAAATVLPEKTNRAV
ADLAAPTRPTQRQEERQEERRGAIRRVFLWRWRLAAAALRHLREEEKRAA
SAASALAAAADARQAARAAALRFLGRVLRLVARRRCAAALRTLAVTAREK
RTQEQLQQRLAAASVRQTTDRMSAGLRMVASVVHRLQEAALASAFAALRR
PAIAAASRRDAAVALARAFLRLLRDRRRRRFGQWRTAVLQCRAADRERAW
ASSSASASASASAAAATIEVAAGAATTLALQADLDRASARSAAAEEESPA
LLQEADSLRGAVA
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mRNA from alignment at P-wetherbeei_contig202:1617..3993-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig202.2.1 ID=mRNA_P-wetherbeei_contig202.2.1|Name=mRNA_P-wetherbeei_contig202.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2377bp|location=Sequence derived from alignment at P-wetherbeei_contig202:1617..3993- (Phaeothamnion wetherbeei SAG_119_79)
ACGCAAGATATTATTCTTGAATTTAAAAAGCGATGGCTTGTGTGCGTCAG
AGAAACATGCGACGTAGAGAATGACCGGCTCCTTCGAGGCTCCCGTGTCT
CCCTCCTCGTCGAGCCTCGCCCAGCTCGATGAGGAGGTCGCCGCCTTTCG
CCTCGAGTCGCAGGCCGTTCTCTCTGCGGGCAGCCCCCGCGTATCTACAT
TTGGCGCACAGGACGATGAGGACCACGAGCCCGCGGTGAGAGAGCGGCGC
CGATTGCCAGGCCGGGATCATTTTGCTGCCAGCTTCGTTCCACCCTCAAC
CTTCTCCTTGCTCTTTGCCCGCTCTGGCAGCAGGGAGAGCTGGACGAACT
GGAACACGAGCTTGACCTATTGGAAAGCGTCAACGCTGCTCTGTACAATG
CGGTCATGAGCACAAAGGTAAGAGTCTCAACATGCATAGAAAGCCACTTG
TACGCAGTTGCATTCTTTTAGACAAGGCACCCACGTAGCTTCATGGATTT
GCGAGCTGAAAGAGTGCTCTTTACGGGATGCCTTCGGCGAAATTTGCGGC
AAGAAATGCCTTATGAAAACGGTGTCTCCAGGTCTGCACCTAAATAATTT
CCGAGCCCTGTCGCCGTTCAACATCGTTGATCGGCGAGAACACTCTGCCC
GCTGCTGCTCTCCATATTTGTAGGTCATGTCGGCCCGCAAGGTGCCGTCA
TTCCACCGGCGGGTGTTGCCGGGAGGCAACCTCCGACTGCATTCGGAAGA
CAAGACGTCGCAGGGACCCGAAAGCAGCCAGGTGGGTTACGGAGAGGCGT
GTGCCTGAGCTGCTGGACTCAAAAAAGAGCAAACGCACAGCCTTTCGACT
TCGCAGCCCGGTTTTGTCTTGCCTTGTCCTTGTCATCTTGCACCACCTCC
TGGCACCACACAACTCCACCCATTTGTCCTGTTGCTTCGTTCGCTGCGAC
GCTCCCTTCTTCCTTTCCACCATTTGGCGTCGGTTGCGGCGATTCATTAA
CATCGAAACCGCTGGGATTCGCTGGGAACCGCTGTGAGCGAACAGCAACT
GGAGGCAAACCTCGACGCCAGCACGCGGCGCCTGCGGTTGAAAGTAGCGG
AGCTGGAAGTCCACAAGGCGCAGCTGGCGGCGCGCGGGAAGGAGGAGCGC
CGCAGCCGCCGACACCGCCATCATCACAGCCGCAGCCGCGCCGACGGTAC
CACCGATCCGGCTGATACGGTGTCCGCCGTGGCCGCTGCCGCTGTCGCTG
ACCCCTCACCCACTGGCGGAAGCGCTTCTACACGCAGCGTGCCGACTGCC
CACACCCGAGATGCCGCGACTGCAGCCGCCGCCGTCTCTGCTAGAACGGG
TTCCTGGCATCATCGCAGCAAGGAGCGCGCTGCTCCGGCAGGAATATCGC
CACTAGATGGCAACAGCGTTTCTGATCCCGCCGCCCGTTCTGCAGCGGAG
CATTTGATGAGAGACGCCGCGGCGGGAAGAGGAGACGGCGGCCAGAGAGA
TCGGGCCAGTAGCCGAGTGCACAGCAGAGATGGCAACGGCCACCCTGCAG
CAGCCACAGTACTTCCAGAGAAAACCAATCGGGCGGTGGCAGATCTGGCG
GCACCAACTCGGCCGACGCAGCGGCAGGAGGAGCGGCAGGAGGAGCGGCG
CGGCGCCATTCGGCGGGTCTTCCTATGGCGCTGGCGGCTGGCAGCTGCCG
CATTGCGGCACCTCCGCGAGGAAGAGAAACGCGCAGCGTCTGCCGCTTCG
GCGCTCGCAGCCGCCGCTGACGCCCGGCAAGCCGCCCGCGCCGCCGCGCT
TCGTTTCCTGGGGCGCGTCTTGCGTTTGGTCGCCCGGCGGCGCTGCGCGG
CGGCGTTGCGGACGCTGGCGGTGACGGCACGGGAGAAGCGAACGCAGGAG
CAGCTGCAGCAGCGGCTCGCGGCAGCGTCGGTGCGGCAAACAACCGACCG
GATGTCCGCTGGGCTCCGGATGGTAGCCTCAGTGGTCCATCGCCTCCAAG
AAGCTGCGTTGGCGTCGGCTTTCGCCGCCCTTCGAAGGCCCGCCATCGCC
GCTGCGAGTCGGCGGGACGCGGCGGTGGCGCTGGCACGTGCCTTCCTCCG
GCTGCTGCGGGACCGGCGGCGGCGCCGCTTCGGGCAGTGGCGGACGGCCG
TCCTGCAATGCCGCGCCGCCGACCGCGAACGGGCGTGGGCGTCGTCGTCG
GCGTCTGCGTCGGCGTCTGCGTCGGCGGCGGCTGCGACAATCGAGGTGGC
AGCAGGGGCGGCAACAACGTTGGCACTGCAAGCCGACCTCGATCGCGCGT
CCGCTCGCTCCGCTGCGGCGGAGGAGGAGAGCCCCGCGCTGCTGCAGGAG
GCGGACAGCCTGCGAGGGGCGGTGGCC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig202:1617..3993-

>mRNA_P-wetherbeei_contig202.2.1 ID=mRNA_P-wetherbeei_contig202.2.1|Name=mRNA_P-wetherbeei_contig202.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1689bp|location=Sequence derived from alignment at P-wetherbeei_contig202:1617..3993- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCGGCTCCTTCGAGGCTCCCGTGTCTCCCTCCTCGTCGAGCCTCGC
CCAGCTCGATGAGGAGGTCGCCGCCTTTCGCCTCGAGTCGCAGGCCGTTC
TCTCTGCGGGCAGCCCCCGCGTATCTACATTTGGCGCACAGGACGATGAG
GACCACGAGCCCGCGGGAGAGCTGGACGAACTGGAACACGAGCTTGACCT
ATTGGAAAGCGTCAACGCTGCTCTGTACAATGCGGTCATGAGCACAAAGG
TCATGTCGGCCCGCAAGGTGCCGTCATTCCACCGGCGGGTGTTGCCGGGA
GGCAACCTCCGACTGCATTCGGAAGACAAGACGTCGCAGGGACCCGAAAG
CAGCCAGCAACTGGAGGCAAACCTCGACGCCAGCACGCGGCGCCTGCGGT
TGAAAGTAGCGGAGCTGGAAGTCCACAAGGCGCAGCTGGCGGCGCGCGGG
AAGGAGGAGCGCCGCAGCCGCCGACACCGCCATCATCACAGCCGCAGCCG
CGCCGACGGTACCACCGATCCGGCTGATACGGTGTCCGCCGTGGCCGCTG
CCGCTGTCGCTGACCCCTCACCCACTGGCGGAAGCGCTTCTACACGCAGC
GTGCCGACTGCCCACACCCGAGATGCCGCGACTGCAGCCGCCGCCGTCTC
TGCTAGAACGGGTTCCTGGCATCATCGCAGCAAGGAGCGCGCTGCTCCGG
CAGGAATATCGCCACTAGATGGCAACAGCGTTTCTGATCCCGCCGCCCGT
TCTGCAGCGGAGCATTTGATGAGAGACGCCGCGGCGGGAAGAGGAGACGG
CGGCCAGAGAGATCGGGCCAGTAGCCGAGTGCACAGCAGAGATGGCAACG
GCCACCCTGCAGCAGCCACAGTACTTCCAGAGAAAACCAATCGGGCGGTG
GCAGATCTGGCGGCACCAACTCGGCCGACGCAGCGGCAGGAGGAGCGGCA
GGAGGAGCGGCGCGGCGCCATTCGGCGGGTCTTCCTATGGCGCTGGCGGC
TGGCAGCTGCCGCATTGCGGCACCTCCGCGAGGAAGAGAAACGCGCAGCG
TCTGCCGCTTCGGCGCTCGCAGCCGCCGCTGACGCCCGGCAAGCCGCCCG
CGCCGCCGCGCTTCGTTTCCTGGGGCGCGTCTTGCGTTTGGTCGCCCGGC
GGCGCTGCGCGGCGGCGTTGCGGACGCTGGCGGTGACGGCACGGGAGAAG
CGAACGCAGGAGCAGCTGCAGCAGCGGCTCGCGGCAGCGTCGGTGCGGCA
AACAACCGACCGGATGTCCGCTGGGCTCCGGATGGTAGCCTCAGTGGTCC
ATCGCCTCCAAGAAGCTGCGTTGGCGTCGGCTTTCGCCGCCCTTCGAAGG
CCCGCCATCGCCGCTGCGAGTCGGCGGGACGCGGCGGTGGCGCTGGCACG
TGCCTTCCTCCGGCTGCTGCGGGACCGGCGGCGGCGCCGCTTCGGGCAGT
GGCGGACGGCCGTCCTGCAATGCCGCGCCGCCGACCGCGAACGGGCGTGG
GCGTCGTCGTCGGCGTCTGCGTCGGCGTCTGCGTCGGCGGCGGCTGCGAC
AATCGAGGTGGCAGCAGGGGCGGCAACAACGTTGGCACTGCAAGCCGACC
TCGATCGCGCGTCCGCTCGCTCCGCTGCGGCGGAGGAGGAGAGCCCCGCG
CTGCTGCAGGAGGCGGACAGCCTGCGAGGGGCGGTGGCC
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