mRNA_P-wetherbeei_contig20167.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20167.1.1
Unique NamemRNA_P-wetherbeei_contig20167.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20167.1.1 vs. uniprot
Match: A0A3A0C969_9BACT (Cupin domain-containing protein n=2 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A3A0C969_9BACT)

HSP 1 Score: 110 bits (274), Expect = 9.200e-29
Identity = 50/86 (58.14%), Postives = 64/86 (74.42%), Query Frame = 1
Query:   97 AYSFAIAEVEVGESSYRHRLRQTEIYFILNGRGRVHVDGETRELGVGEVCVIPAEAEQWIDNIGDECLRFVAVVSPPWRAEDDERL 354
            +YSFAIA VE G+++YRH LRQ+E+Y+I+ G G +HV  ET+E+  G+   IP E EQWI+NIG   L F A+VSPPWR EDD RL
Sbjct:   35 SYSFAIAYVEPGKATYRHYLRQSEVYYIIEGIGNMHVGEETKEVQSGDAVYIPPEKEQWIENIGQNVLVFAALVSPPWRLEDDIRL 120          
BLAST of mRNA_P-wetherbeei_contig20167.1.1 vs. uniprot
Match: A0A7C2U8G6_9BACT (Cupin domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A7C2U8G6_9BACT)

HSP 1 Score: 108 bits (271), Expect = 2.270e-28
Identity = 48/86 (55.81%), Postives = 66/86 (76.74%), Query Frame = 1
Query:   97 AYSFAIAEVEVGESSYRHRLRQTEIYFILNGRGRVHVDGETRELGVGEVCVIPAEAEQWIDNIGDECLRFVAVVSPPWRAEDDERL 354
            +YS A+A V+ G+S++ H LRQTE+YFIL G GR+H++ ET+++   +V VIP E +QWI+NIG   L F A+VSPPWRAEDD R+
Sbjct:   34 SYSLAMAYVDPGKSTHPHYLRQTEVYFILQGIGRMHIEDETQDVNEDDVVVIPKEKKQWIENIGQNVLVFAAIVSPPWRAEDDVRV 119          
BLAST of mRNA_P-wetherbeei_contig20167.1.1 vs. uniprot
Match: A0A7Y5FIB7_9BACT (Cupin domain-containing protein n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A7Y5FIB7_9BACT)

HSP 1 Score: 106 bits (265), Expect = 2.130e-27
Identity = 47/85 (55.29%), Postives = 62/85 (72.94%), Query Frame = 1
Query:   97 AYSFAIAEVEVGESSYRHRLRQTEIYFILNGRGRVHVDGETRELGVGEVCVIPAEAEQWIDNIGDECLRFVAVVSPPWRAEDDER 351
            +YS AIA VE G+++YRH LRQ+E+Y+IL G G +H+  ET+E+  G+   IP   EQWI+N+G   L F A+VSPPWRAEDD R
Sbjct:   35 SYSLAIAYVEPGKATYRHSLRQSEVYYILEGLGNMHIGAETQEVHPGDAIYIPPGQEQWIENLGQNVLVFAAIVSPPWRAEDDIR 119          
BLAST of mRNA_P-wetherbeei_contig20167.1.1 vs. uniprot
Match: A0A7W1IZX6_9BACT (Cupin domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7W1IZX6_9BACT)

HSP 1 Score: 106 bits (264), Expect = 3.110e-27
Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 1
Query:  100 YSFAIAEVEVGESSYRHRLRQTEIYFILNGRGRVHVDGETRELGVGEVCVIPAEAEQWIDNIGDECLRFVAVVSPPWRAEDDERL 354
            YS AIA V+ G+S++ H LRQTE+Y+I+ G G +H+  E RE+G G+  VIP    QWI+N G + L F A+VSPPWRAEDD RL
Sbjct:   35 YSLAIAWVDPGQSTHPHALRQTEVYYIIRGNGVMHIGQEAREVGPGDAIVIPPGHAQWIENRGPQALEFAAIVSPPWRAEDDRRL 119          
BLAST of mRNA_P-wetherbeei_contig20167.1.1 vs. uniprot
Match: A0A523K961_9GAMM (Cupin domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A523K961_9GAMM)

HSP 1 Score: 103 bits (256), Expect = 4.400e-26
Identity = 43/85 (50.59%), Postives = 64/85 (75.29%), Query Frame = 1
Query:  100 YSFAIAEVEVGESSYRHRLRQTEIYFILNGRGRVHVDGETRELGVGEVCVIPAEAEQWIDNIGDECLRFVAVVSPPWRAEDDERL 354
            YS A+A V++G+ SY+H+L+QTE+Y IL G GR+ ++ E  E+  G+V ++PAEA Q I+NIG+E L F+A+VSPPW  + D R+
Sbjct:   35 YSLALATVDIGQQSYQHKLKQTEVYHILQGHGRMRIENEKNEVAAGDVIMVPAEAIQCIENIGNEPLIFIAIVSPPWTNDGDTRI 119          
BLAST of mRNA_P-wetherbeei_contig20167.1.1 vs. uniprot
Match: A0A7Y5KFY8_9BACT (Cupin domain-containing protein n=1 Tax=candidate division KSB1 bacterium TaxID=2172550 RepID=A0A7Y5KFY8_9BACT)

HSP 1 Score: 102 bits (255), Expect = 6.070e-26
Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = 1
Query:  100 YSFAIAEVEVGESSYRHRLRQTEIYFILNGRGRVHVDGETRELGVGEVCVIPAEAEQWIDNIGDECLRFVAVVSPPWRAEDDERL 354
            YS AIA VE G+++Y+H LRQ+E+Y+I+ G GR+H++ E +E+  G+   IP E  QWI+N+G+  L F A+VSPPWR EDD R+
Sbjct:   35 YSLAIAYVEPGKATYQHYLRQSEVYYIIAGIGRMHIEEEVQEVQPGDTVYIPKEKNQWIENMGENVLVFAALVSPPWREEDDVRI 119          
BLAST of mRNA_P-wetherbeei_contig20167.1.1 vs. uniprot
Match: A0A661BTH4_9GAMM (Cupin domain-containing protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BTH4_9GAMM)

HSP 1 Score: 100 bits (248), Expect = 4.440e-25
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = 1
Query:  100 YSFAIAEVEVGESSYRHRLRQTEIYFILNGRGRVHVDGETRELGVGEVCVIPAEAEQWIDNIGDECLRFVAVVSPPWRAEDDERL 354
            YS A+A V+VG  SY+H+L QTE+Y IL G GR+ ++ E  ++  G+  VIPAEA QWI+NIG E L F  +VSPPW  + D R+
Sbjct:   15 YSLALATVDVGSKSYQHKLEQTEVYHILQGHGRMFIENEDNKVDAGDGIVIPAEALQWIENIGSEPLVFAVIVSPPWTKDGDMRV 99          
BLAST of mRNA_P-wetherbeei_contig20167.1.1 vs. uniprot
Match: A0A849MKZ7_9PROT (Cupin domain-containing protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A849MKZ7_9PROT)

HSP 1 Score: 100 bits (248), Expect = 7.180e-25
Identity = 43/85 (50.59%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  100 YSFAIAEVEVGESSYRHRLRQTEIYFILNGRGRVHVDGETRELGVGEVCVIPAEAEQWIDNIGDECLRFVAVVSPPWRAEDDERL 354
            YS AIA V+VG+ SY+H+L Q E+Y I  GRG +H+D E +E+  G+   I     QWI+NI DE L F+A+V+PPW  E D+RL
Sbjct:   35 YSIAIATVDVGQHSYKHKLEQAEVYLINTGRGLMHIDDEQKEVKAGDAIYIEPSRTQWIENIADEVLIFIAIVNPPWSEEGDKRL 119          
BLAST of mRNA_P-wetherbeei_contig20167.1.1 vs. uniprot
Match: A0A3D5DHR2_9GAMM (Cupin domain-containing protein n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DHR2_9GAMM)

HSP 1 Score: 99.8 bits (247), Expect = 1.050e-24
Identity = 44/86 (51.16%), Postives = 61/86 (70.93%), Query Frame = 1
Query:   97 AYSFAIAEVEVGESSYRHRLRQTEIYFILNGRGRVHVDGETRELGVGEVCVIPAEAEQWIDNIGDECLRFVAVVSPPWRAEDDERL 354
            A+S AIAEVE G  ++RHRL QTE+Y+I++G G VH+  E + +  G+  +I +   QWI+NIG + L+F A+VSPPWR E DE L
Sbjct:   34 AFSLAIAEVEPGNRTFRHRLSQTEVYYIVSGTGVVHIGNEQQRVTSGDAVLIGSSQVQWIENIGFDTLKFAALVSPPWRPESDENL 119          
BLAST of mRNA_P-wetherbeei_contig20167.1.1 vs. uniprot
Match: A0A523NRN0_9PROT (Cupin domain-containing protein n=2 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A523NRN0_9PROT)

HSP 1 Score: 99.8 bits (247), Expect = 1.140e-24
Identity = 45/85 (52.94%), Postives = 58/85 (68.24%), Query Frame = 1
Query:  100 YSFAIAEVEVGESSYRHRLRQTEIYFILNGRGRVHVDGETRELGVGEVCVIPAEAEQWIDNIGDECLRFVAVVSPPWRAEDDERL 354
            +S A+A V  G  SYRHRL  TE+Y+IL G G +H+  + R + VG+  +IP    QWI N   E LRFVA+VSPPWR++DDERL
Sbjct:   35 FSLAVAAVAPGAQSYRHRLCNTEVYYILAGAGVMHIGDDERPVSVGDAVLIPPNQVQWISNPHAEILRFVAIVSPPWRSQDDERL 119          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20167.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3A0C969_9BACT9.200e-2958.14Cupin domain-containing protein n=2 Tax=candidate ... [more]
A0A7C2U8G6_9BACT2.270e-2855.81Cupin domain-containing protein n=1 Tax=bacterium ... [more]
A0A7Y5FIB7_9BACT2.130e-2755.29Cupin domain-containing protein n=1 Tax=candidate ... [more]
A0A7W1IZX6_9BACT3.110e-2755.29Cupin domain-containing protein n=1 Tax=Planctomyc... [more]
A0A523K961_9GAMM4.400e-2650.59Cupin domain-containing protein n=1 Tax=Gammaprote... [more]
A0A7Y5KFY8_9BACT6.070e-2651.76Cupin domain-containing protein n=1 Tax=candidate ... [more]
A0A661BTH4_9GAMM4.440e-2551.76Cupin domain-containing protein (Fragment) n=1 Tax... [more]
A0A849MKZ7_9PROT7.180e-2550.59Cupin domain-containing protein n=1 Tax=Proteobact... [more]
A0A3D5DHR2_9GAMM1.050e-2451.16Cupin domain-containing protein n=1 Tax=Gammaprote... [more]
A0A523NRN0_9PROT1.140e-2452.94Cupin domain-containing protein n=2 Tax=Proteobact... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20167contigP-wetherbeei_contig20167:239..595 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1220534.B655_0574
PFAMsCupin_2
Model size359
Max annot lvl28890|Euryarchaeota
Hectar predicted targeting categorymitochondrion
Exons1
Evalue2.09e-21
EggNOG OGsCOG0662@1|root,arCOG03003@2157|Archaea,2Y1J0@28890|Euryarchaeota
DescriptionPFAM Cupin
Cds size357
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186192.7609937-CDS-P-wetherbeei_contig20167:238..5951683186192.7609937-CDS-P-wetherbeei_contig20167:238..595Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20167 239..595 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20167.1.1prot_P-wetherbeei_contig20167.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20167 239..595 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20167.1.1

>prot_P-wetherbeei_contig20167.1.1 ID=prot_P-wetherbeei_contig20167.1.1|Name=mRNA_P-wetherbeei_contig20167.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=119bp
VHQIPRRLSATAGQRRLSSFRTAASGQGRSRPAYSFAIAEVEVGESSYRH
RLRQTEIYFILNGRGRVHVDGETRELGVGEVCVIPAEAEQWIDNIGDECL
RFVAVVSPPWRAEDDERL*
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mRNA from alignment at P-wetherbeei_contig20167:239..595-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20167.1.1 ID=mRNA_P-wetherbeei_contig20167.1.1|Name=mRNA_P-wetherbeei_contig20167.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig20167:239..595- (Phaeothamnion wetherbeei SAG_119_79)
GTTCACCAAATCCCTCGCCGCTTGTCCGCCACTGCTGGCCAACGACGGTT GTCGTCTTTTCGAACTGCTGCATCCGGCCAAGGACGCAGTCGACCTGCCT ATTCATTCGCTATCGCCGAAGTGGAAGTAGGTGAGAGCAGCTACCGTCAC CGTCTGCGCCAGACCGAGATCTATTTCATTCTGAATGGGCGCGGCCGCGT GCATGTCGACGGTGAGACGCGTGAGCTTGGCGTGGGTGAGGTTTGCGTGA TACCGGCCGAGGCCGAGCAATGGATAGACAATATCGGCGACGAGTGCCTG CGCTTCGTGGCGGTGGTCAGCCCGCCCTGGCGCGCCGAGGATGACGAACG GCTGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20167:239..595-

>mRNA_P-wetherbeei_contig20167.1.1 ID=mRNA_P-wetherbeei_contig20167.1.1|Name=mRNA_P-wetherbeei_contig20167.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=357bp|location=Sequence derived from alignment at P-wetherbeei_contig20167:239..595- (Phaeothamnion wetherbeei SAG_119_79)
GTTCACCAAATCCCTCGCCGCTTGTCCGCCACTGCTGGCCAACGACGGTT
GTCGTCTTTTCGAACTGCTGCATCCGGCCAAGGACGCAGTCGACCTGCCT
ATTCATTCGCTATCGCCGAAGTGGAAGTAGGTGAGAGCAGCTACCGTCAC
CGTCTGCGCCAGACCGAGATCTATTTCATTCTGAATGGGCGCGGCCGCGT
GCATGTCGACGGTGAGACGCGTGAGCTTGGCGTGGGTGAGGTTTGCGTGA
TACCGGCCGAGGCCGAGCAATGGATAGACAATATCGGCGACGAGTGCCTG
CGCTTCGTGGCGGTGGTCAGCCCGCCCTGGCGCGCCGAGGATGACGAACG
GCTGTGA
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