mRNA_P-wetherbeei_contig2016.2.2 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2016.2.2
Unique NamemRNA_P-wetherbeei_contig2016.2.2
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2016.2.2 vs. uniprot
Match: A0A7S1XSK6_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XSK6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 4.930e-11
Identity = 50/154 (32.47%), Postives = 75/154 (48.70%), Query Frame = 3 
Query:  303 AICVGCNMIPFFPGQALNAGAGGLYGFGKGWPLVCASQALSAAIAFEGARCFSRTARFKTILAFVERSAAVRKVIEVLSAITSRRRAAGTGGGVAALWAA-FLTTLLLRQAPIVPFSISNYVLGALSDLPLLPFCLGTLVGCALGNAVVVAAGA 761
            A  VG +M+P  P Q     AG   GF +G  + CA+Q  +AA++ + AR      +         R +    V +V+SA+  +      G      W   F+   +LR +PIVPF++ NY++GA +  PL P  + TL+GC   N    AAGA
Sbjct:   58 ATMVGLDMVPGLPTQPATVAAGATLGFWQGLSVTCAAQTTAAALSLQLARRLGSEGQLLGDFLSKTRESGG-GVFDVVSAVAEKVDGTDPGSD----WRRPFMAIYVLRNSPIVPFTLGNYLIGATTRAPLAPMLMATLLGCLPANCCFAAAGA 206
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BLAST of mRNA_P-wetherbeei_contig2016.2.2 vs. uniprot
Match: A0A061RWY7_9CHLO (Dna glycosylase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RWY7_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 9.140e-11
Identity = 63/178 (35.39%), Postives = 85/178 (47.75%), Query Frame = 3 
Query:  243 FVDPTELVSRLQHLPIYAYGAICVGCNMIPFFPGQALNAGAGGLYGFGKGWPLVCASQALSAAIAFEGARCFSRTARFKTILAFVERSAAVRKVIEVLSAITSRRRAAGTGGGVAALWAAFLTTLLLRQAPIVPFSISNYVLGALSDLPLLPFCLGTLVGCALGNAVVVAAGAAGRNL 776
            F++  E +  L    ++  GA+ +   MIP FP Q L+  AG L+G  KG  LV A    +A  AF  AR   R+   + I A +E          +L  +     +          W  F++ LLLR  P+VPFS SNYVLG LS LP LPF   TL G      +  + G AGR+L
Sbjct:  149 FLEQVEALGPLG--AVFFTGAVLLA-EMIPLFPTQPLSLAAGLLFGGTKGAGLVLAGNIGAATAAFLLARGVGRSIAERVIDAELEGEEGGGAAKSLLGDVKETIESGSE-------WQQFMSVLLLRLTPVVPFSASNYVLG-LSPLPFLPFFAATLTGMTPWALLFASIGGAGRSL 315
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BLAST of mRNA_P-wetherbeei_contig2016.2.2 vs. uniprot
Match: A0A7S1X2N1_9CHLO (Hypothetical protein n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X2N1_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 8.340e-10
Identity = 62/173 (35.84%), Postives = 82/173 (47.40%), Query Frame = 3 
Query:  258 ELVSRLQHLPIYAYGAICVGCNMIPFFPGQALNAGAGGLYGFGKGWPLVCASQALSAAIAFEGARCFSRTARFKTILAFVERSAAVRKVIEVLSAITSRRRAAGTGGGVAALWAAFLTTLLLRQAPIVPFSISNYVLGALSDLPLLPFCLGTLVGCALGNAVVVAAGAAGRNL 776
            E +  +  L   A+ A      MIP FP Q  +  AG L+G  KG  LV A    +A  AF  AR   RT   + ++      A   +  +  S +    RA   G   A     F++ LLLR  P+VPFS SNY+LG L+ LP LPF   TLVG +    +    G AGR+L
Sbjct:   82 ESIEAMGPLGAVAFIATISVAEMIPLFPTQPFSLAAGLLFGGMKGAGLVLAGNVTAATSAFLLARGVGRTLA-ERVIKHEMAEAGEAEAAKGKSMLGDVERAIENGSPTAQ----FVSVLLLRLTPVVPFSASNYLLG-LTPLPFLPFFGATLVGMSPWAVLFATLGQAGRSL 248
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2016.2.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A7S1XSK6_9STRA4.930e-1132.47Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A061RWY7_9CHLO9.140e-1135.39Dna glycosylase n=1 Tax=Tetraselmis sp. GSL018 Tax... [more]
A0A7S1X2N1_9CHLO8.340e-1035.84Hypothetical protein n=1 Tax=Tetraselmis chuii Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2016contigP-wetherbeei_contig2016:3281..4792 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog3067.XP_002952000.1
PFAMsSNARE_assoc
Model size1200
Max annot lvl3041|Chlorophyta
Hectar predicted targeting categorysignal peptide
Exons2
Evalue6.96e-09
EggNOG OGsCOG0398@1|root,KOG3140@2759|Eukaryota,38087@33090|Viridiplantae,34KSG@3041|Chlorophyta
DescriptionSNARE associated Golgi protein
Cds size1059
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186192.5811415-UTR-P-wetherbeei_contig2016:3280..33061683186192.5811415-UTR-P-wetherbeei_contig2016:3280..3306Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2016 3281..3306 +
1683186192.6126978-UTR-P-wetherbeei_contig2016:4677..47921683186192.6126978-UTR-P-wetherbeei_contig2016:4677..4792Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2016 4678..4792 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186192.5923972-CDS-P-wetherbeei_contig2016:3306..36961683186192.5923972-CDS-P-wetherbeei_contig2016:3306..3696Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2016 3307..3696 +
1683186192.6042666-CDS-P-wetherbeei_contig2016:4008..46771683186192.6042666-CDS-P-wetherbeei_contig2016:4008..4677Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2016 4009..4677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2016.2.2prot_P-wetherbeei_contig2016.2.2Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2016 3307..4677 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2016.2.2

>prot_P-wetherbeei_contig2016.2.2 ID=prot_P-wetherbeei_contig2016.2.2|Name=mRNA_P-wetherbeei_contig2016.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=353bp
MRVTCGRALVGALAAAQSTPAYTTASMFIVASEHSFSPRHRASGMHRREI
RRNRRNWQPPIRRSGARGAHMAFVDPTELVSRLQHLPIYAYGAICVGCNM
IPFFPGQALNAGAGGLYGFGKGWPLVCASQALSAAIAFEGARCFSRTARF
KTILAFVERSAAVRKVIEVLSAITSRRRAAGTGGGVAALWAAFLTTLLLR
QAPIVPFSISNYVLGALSDLPLLPFCLGTLVGCALGNAVVVAAGAAGRNL
GNLRGMGDLGGVGTARTAAVAALALVGAVAFGAFLFRKVGEATVAVPPLP
VADADGGGAAAKTAASEAAAPLLLPPPLPPLPPPPLLPSRLTGGEQRRLD
GR*
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mRNA from alignment at P-wetherbeei_contig2016:3281..4792+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2016.2.2 ID=mRNA_P-wetherbeei_contig2016.2.2|Name=mRNA_P-wetherbeei_contig2016.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1512bp|location=Sequence derived from alignment at P-wetherbeei_contig2016:3281..4792+ (Phaeothamnion wetherbeei SAG_119_79)
CTAGCCGTCGCGGAGGCTGCTTTAGAATGCGTGTCACTTGCGGACGCGCC
CTCGTTGGCGCCCTGGCTGCAGCGCAGTCGACACCTGCATATACGACTGC
CAGCATGTTTATCGTCGCGAGCGAGCATTCGTTCTCGCCCCGTCATCGAG
CCTCTGGTATGCATCGACGAGAAATCCGCCGAAACCGGCGGAACTGGCAG
CCTCCGATACGACGAAGCGGAGCAAGAGGAGCGCACATGGCCTTTGTCGA
CCCCACCGAGCTCGTTTCGCGGTTGCAACACCTGCCGATTTACGCGTACG
GCGCCATCTGCGTAGGATGCAATATGATTCCGTTCTTTCCCGGCCAGGCG
CTCAACGCTGGCGCAGGAGGCCTCTATGGTTTTGGAAAAGGGTGGCCGCT
CGTCTGTGCAAGCCAAGTGAGAGAGGGTCTTTCGACCGATTGCTTTCTTC
TACAGCTCCGTTTTCTTGTTATTTTCGCTTCCATTTCCTCTGTTGCTTTA
GGTTACTTGTTCTTCCCGCTTCAACCATTTCTTCGCTGCAGGGCTGTGTG
CGGGTAAGGTCTCATTGGAAGACTACAGTGACAACAGGCTTTTAAAGTTT
CGCTTTCCCCAGTCCATGGGTTAGCTTTCATCGTGCCGCGACCGAAACGA
TCGCCCCGATGGCTCACGAAACCCCTTTCGTTCGCCTGCCGTATGTGTCG
GTTACGTCAATTACGAGTACTATAACAGGCGCTGTCGGCGGCGATCGCCT
TCGAAGGCGCGCGCTGCTTCAGCCGGACAGCGCGCTTCAAGACTATCCTG
GCCTTCGTGGAGCGCTCCGCCGCCGTACGGAAAGTCATCGAAGTCCTCTC
TGCCATCACCTCCAGACGGCGTGCAGCAGGCACTGGCGGCGGCGTCGCCG
CGCTCTGGGCCGCCTTTCTGACGACGCTGCTGCTGCGGCAGGCGCCGATT
GTGCCGTTCAGCATCTCCAACTACGTGCTGGGCGCGCTGAGTGACCTGCC
GCTGCTGCCATTCTGCCTCGGCACGCTCGTCGGCTGCGCGCTCGGCAATG
CCGTCGTCGTCGCCGCCGGCGCCGCCGGGCGGAACCTAGGGAACTTGCGG
GGCATGGGAGACCTCGGTGGCGTCGGTACCGCGCGGACGGCCGCGGTGGC
GGCCCTGGCGCTAGTCGGTGCCGTGGCATTTGGGGCATTTCTGTTCCGGA
AAGTGGGCGAGGCGACGGTGGCGGTGCCGCCGCTACCCGTCGCGGATGCC
GACGGCGGCGGAGCCGCCGCTAAGACTGCCGCCTCTGAGGCCGCTGCGCC
GCTGCTGCTGCCGCCGCCACTGCCGCCACTGCCGCCGCCGCCACTGCTGC
CGTCTCGGCTGACAGGCGGAGAACAGCGGCGGCTTGACGGCCGGTAAAGA
GAGAGAGTAAGAGGGCAGGTGCTCCGCTGGTATCGGCGACGGATTGCCGC
TGCTCAGCCGCCTGCCTTGCCCGCCGGCGGAACGCAAATATAGAGATAAG
TTCTTCTCGGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2016:3281..4792+

>mRNA_P-wetherbeei_contig2016.2.2 ID=mRNA_P-wetherbeei_contig2016.2.2|Name=mRNA_P-wetherbeei_contig2016.2.2|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1059bp|location=Sequence derived from alignment at P-wetherbeei_contig2016:3281..4792+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTGTCACTTGCGGACGCGCCCTCGTTGGCGCCCTGGCTGCAGCGCA
GTCGACACCTGCATATACGACTGCCAGCATGTTTATCGTCGCGAGCGAGC
ATTCGTTCTCGCCCCGTCATCGAGCCTCTGGTATGCATCGACGAGAAATC
CGCCGAAACCGGCGGAACTGGCAGCCTCCGATACGACGAAGCGGAGCAAG
AGGAGCGCACATGGCCTTTGTCGACCCCACCGAGCTCGTTTCGCGGTTGC
AACACCTGCCGATTTACGCGTACGGCGCCATCTGCGTAGGATGCAATATG
ATTCCGTTCTTTCCCGGCCAGGCGCTCAACGCTGGCGCAGGAGGCCTCTA
TGGTTTTGGAAAAGGGTGGCCGCTCGTCTGTGCAAGCCAAGCGCTGTCGG
CGGCGATCGCCTTCGAAGGCGCGCGCTGCTTCAGCCGGACAGCGCGCTTC
AAGACTATCCTGGCCTTCGTGGAGCGCTCCGCCGCCGTACGGAAAGTCAT
CGAAGTCCTCTCTGCCATCACCTCCAGACGGCGTGCAGCAGGCACTGGCG
GCGGCGTCGCCGCGCTCTGGGCCGCCTTTCTGACGACGCTGCTGCTGCGG
CAGGCGCCGATTGTGCCGTTCAGCATCTCCAACTACGTGCTGGGCGCGCT
GAGTGACCTGCCGCTGCTGCCATTCTGCCTCGGCACGCTCGTCGGCTGCG
CGCTCGGCAATGCCGTCGTCGTCGCCGCCGGCGCCGCCGGGCGGAACCTA
GGGAACTTGCGGGGCATGGGAGACCTCGGTGGCGTCGGTACCGCGCGGAC
GGCCGCGGTGGCGGCCCTGGCGCTAGTCGGTGCCGTGGCATTTGGGGCAT
TTCTGTTCCGGAAAGTGGGCGAGGCGACGGTGGCGGTGCCGCCGCTACCC
GTCGCGGATGCCGACGGCGGCGGAGCCGCCGCTAAGACTGCCGCCTCTGA
GGCCGCTGCGCCGCTGCTGCTGCCGCCGCCACTGCCGCCACTGCCGCCGC
CGCCACTGCTGCCGTCTCGGCTGACAGGCGGAGAACAGCGGCGGCTTGAC
GGCCGGTAA
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