mRNA_P-wetherbeei_contig20149.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20149.2.1
Unique NamemRNA_P-wetherbeei_contig20149.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20149.2.1 vs. uniprot
Match: A0A7Z9Q244_9BACT (MotA/TolQ/ExbB proton channel family protein (Fragment) n=1 Tax=Phycisphaerales bacterium TaxID=2052180 RepID=A0A7Z9Q244_9BACT)

HSP 1 Score: 113 bits (282), Expect = 4.660e-29
Identity = 61/104 (58.65%), Postives = 79/104 (75.96%), Query Frame = 1
Query:    4 SGPVPAVVEAGIKNWDQSDRVMEDSISAQSQVEVEELHKNLTVLETIVTASPLVGLLGTITGMMGVFRAVSEKLAQSPQADTSTILAGIGEALIATATGILVAV 315
            + P  A   A ++NW QS  V++ +++ Q+     EL++ L +LETIVTA+PL+GLLGTITGMMGVFRAV++KL   P A+T+ I AGIGEALIATATGILVAV
Sbjct:   66 TSPAHACARAAVENWSQSSDVVDKAMTVQAMESEPELNRFLGLLETIVTAAPLIGLLGTITGMMGVFRAVAQKLGADPHANTTGITAGIGEALIATATGILVAV 169          
BLAST of mRNA_P-wetherbeei_contig20149.2.1 vs. uniprot
Match: UPI001987DB25 (MotA/TolQ/ExbB proton channel family protein n=1 Tax=Chthonomonadaceae bacterium TaxID=2739509 RepID=UPI001987DB25)

HSP 1 Score: 97.8 bits (242), Expect = 1.640e-22
Identity = 57/139 (41.01%), Postives = 84/139 (60.43%), Query Frame = 1
Query:    4 SGPVPAVVEAGIKNWDQSDRVMEDSISAQSQVEVEELHKNLTVLETIVTASPLVGLLGTITGMMGVFRAVSEKLAQSPQADTSTILAGIGEALIATATGILVAVFCLLCHNFFQARAERQMAASQRAVNELLLLRHQMK 420
            SGPV A +   +K+  Q    +E  +    Q     L + L VL+T  T SPL+GLLGTI GM+G F A+S    Q  + ++  +L+G+GEAL ATATGIL+AV C + +N+F AR     A ++RAV +L+ +  ++K
Sbjct:   70 SGPVAACLAVVLKHRHQPTEEIERLVEETGQDYFVPLERLLPVLDTTTTVSPLLGLLGTIVGMIGTFNAIS---VQRTRGNSDAVLSGVGEALYATATGILIAVICFIAYNYFAARLRTLTAGTERAVTKLINVLTELK 205          
BLAST of mRNA_P-wetherbeei_contig20149.2.1 vs. uniprot
Match: A0A2V2S4X6_9BACT (MotA_ExbB domain-containing protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A2V2S4X6_9BACT)

HSP 1 Score: 95.5 bits (236), Expect = 1.720e-21
Identity = 52/117 (44.44%), Postives = 78/117 (66.67%), Query Frame = 1
Query:    1 LSGPVPAVVEAGIKNWDQSDRVMEDSISAQSQVEVEELHKNLTVLETIVTASPLVGLLGTITGMMGVFRAVSEKLAQSPQADTSTILAGIGEALIATATGILVAVFCLLCHNFFQAR 351
             + P+ AV+ AGI+++      ME ++  +++  V  L K + VL+T++TA+PL+GLLGTITGMM  FR +SEK    P A T     G+ EALIATATG+++A+ CL+ +N+  AR
Sbjct:   96 FANPIAAVLSAGIEHFSSPVSEMELAMKNRAEEWVPLLEKRIEVLDTVITAAPLMGLLGTITGMMASFRVLSEKGVNEPNAITG----GVAEALIATATGLVIALICLVAYNYLSAR 208          
BLAST of mRNA_P-wetherbeei_contig20149.2.1 vs. uniprot
Match: A0A7V4AU37_9BACT (MotA/TolQ/ExbB proton channel family protein n=1 Tax=Armatimonadetes bacterium TaxID=2033014 RepID=A0A7V4AU37_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 1.620e-19
Identity = 48/134 (35.82%), Postives = 78/134 (58.21%), Query Frame = 1
Query:    7 GPVPAVVEAGIKNWDQSDRVMEDSISAQSQVEVEELHKNLTVLETIVTASPLVGLLGTITGMMGVFRAVSEKLAQSPQADTSTILAGIGEALIATATGILVAVFCLLCHNFFQARAERQMAASQRAVNELLLLR 408
            GPV  V+ AG+ +WD      E ++  +  +E E L K L +L+T++T +PL+GLLGT+TGM+  F  V    A++     + I  G+ EALIATATG+ +A+  L+ +N+   R  + +   + A   ++ LR
Sbjct:   74 GPVGRVMAAGLDHWDAGSAACEKAMEERGMIEREALSKRLVILDTVITVAPLLGLLGTVTGMIKAFEVVG---AENQIGSPTAITGGVAEALIATATGLFIAIVTLVIYNYLNDRVRQVVGMMEIAGTRIVNLR 204          
BLAST of mRNA_P-wetherbeei_contig20149.2.1 vs. uniprot
Match: A0A1F9LVZ0_9DELT (MotA_ExbB domain-containing protein n=2 Tax=unclassified Deltaproteobacteria TaxID=122706 RepID=A0A1F9LVZ0_9DELT)

HSP 1 Score: 88.6 bits (218), Expect = 4.080e-19
Identity = 56/135 (41.48%), Postives = 87/135 (64.44%), Query Frame = 1
Query:   10 PVPAVVEAGIKNWDQS-DRVMEDSISAQSQVEVEELHKNLTVLETIVTASPLVGLLGTITGMMGVFRAVSEKLAQSPQADTSTILAGIGEALIATATGILVAVFCLLCHNFFQARAERQMAASQRAVNELLLLRH 411
            P+  V+  G+ + + S  + ME  ++AQ++V V  L + LT+L+TI+T +PL+GLLGT+TGM+  F  +SE     P A T     G+ EALIATATG+L+A+  L+ +N+F +RAE++M   +   + L LL H
Sbjct:   70 PIVRVLAEGLAHLNPSPSKAME--VAAQAEVPV--LKRRLTILDTIITLAPLLGLLGTVTGMISSFGIMSEAGIGQPHAVTG----GVAEALIATATGLLIAILTLIPYNYFTSRAEKEMEDMEYFASRLELLFH 196          
BLAST of mRNA_P-wetherbeei_contig20149.2.1 vs. uniprot
Match: A0A7V0MBK0_9BACT (MotA/TolQ/ExbB proton channel family protein n=2 Tax=Bacteria TaxID=2 RepID=A0A7V0MBK0_9BACT)

HSP 1 Score: 88.6 bits (218), Expect = 4.640e-19
Identity = 50/131 (38.17%), Postives = 75/131 (57.25%), Query Frame = 1
Query:    7 GPVPAVVEAGIKNWDQSDRVMEDSISAQSQVEVEELHKNLTVLETIVTASPLVGLLGTITGMMGVFRAVSEKLAQSPQADTSTILAGIGEALIATATGILVAVFCLLCHNFFQARAERQMAASQRAVNELL 399
            GPV  +++AGI   D+S   ++++I      EV  L KNL +L TI   SPL+GLLGT+TGMM  F+ + EK   S       +  GI EALI TA G+ VA+   L +N+   R E  +   +++ ++L+
Sbjct:   70 GPVAHIMKAGILKHDRSKAEVKEAIEDAGLHEVARLEKNLNILSTIAYISPLLGLLGTVTGMMEAFQVIQEKAVASYPVSPGDLAGGIWEALITTAAGLAVAIVFYLAYNYLVNRVENIVLEMEQSASDLI 200          
BLAST of mRNA_P-wetherbeei_contig20149.2.1 vs. uniprot
Match: A0A6N7M1G0_9FIRM (MotA_ExbB domain-containing protein n=1 Tax=Clostridia bacterium TaxID=2044939 RepID=A0A6N7M1G0_9FIRM)

HSP 1 Score: 88.2 bits (217), Expect = 5.500e-19
Identity = 49/131 (37.40%), Postives = 78/131 (59.54%), Query Frame = 1
Query:    7 GPVPAVVEAGIKNWDQSDRVMEDSISAQSQVEVEELHKNLTVLETIVTASPLVGLLGTITGMMGVFRAVSEKLAQSPQADTSTILAGIGEALIATATGILVAVFCLLCHNFFQARAERQMAASQRAVNELL 399
            GPVP++++AG+  + +  + MED+   Q+  EV  +   L VL TI   S L+G  GT+ GM+  F +++   A SP    + I +GI EALI TATG+L+A+  LL + +F  R +R ++  +R   EL+
Sbjct:   68 GPVPSILKAGLNQYGKGQKAMEDAFETQASEEVPRVESYLPVLATIAAVSTLMGFTGTVVGMIRAFDSIAAASATSP----AIIASGISEALITTATGLLIAIPTLLFYRYFVHRVDRFVSEIERYCKELI 194          
BLAST of mRNA_P-wetherbeei_contig20149.2.1 vs. uniprot
Match: A0A7Y2G6K2_9BACT (MotA/TolQ/ExbB proton channel family protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A7Y2G6K2_9BACT)

HSP 1 Score: 87.4 bits (215), Expect = 1.090e-18
Identity = 50/131 (38.17%), Postives = 77/131 (58.78%), Query Frame = 1
Query:    7 GPVPAVVEAGIKNWDQSDRVMEDSISAQSQVEVEELHKNLTVLETIVTASPLVGLLGTITGMMGVFRAVSEKLAQSPQADTSTILAGIGEALIATATGILVAVFCLLCHNFFQARAERQMAASQRAVNELL 399
            GP+PA++ AG++  + S    E +I +   VE+  L K L VL TI   +PL G LGT++GM+G F A+    A + Q +   +  GI EALI TATG+LVA+   + HN+F ++ +R +   Q    +L+
Sbjct:   57 GPIPAILHAGLRRANISVEAAEKAIESSGVVELSFLEKGLLVLATIANVAPLFGFLGTVSGMIGAFDAI----AAADQVNAKLVATGISEALITTATGLLVAIPMSMGHNYFVSQIDRFVIEMQETSADLV 183          
BLAST of mRNA_P-wetherbeei_contig20149.2.1 vs. uniprot
Match: A0A1F8XHS4_9DELT (MotA_ExbB domain-containing protein n=1 Tax=Deltaproteobacteria bacterium GWA2_55_10 TaxID=1797809 RepID=A0A1F8XHS4_9DELT)

HSP 1 Score: 87.0 bits (214), Expect = 1.630e-18
Identity = 54/129 (41.86%), Postives = 80/129 (62.02%), Query Frame = 1
Query:   10 PVPAVVEAGIKNWDQSDRVMEDSISAQSQVEVEELHKNLTVLETIVTASPLVGLLGTITGMMGVFRAVSEKLAQSPQADTSTILAGIGEALIATATGILVAVFCLLCHNFFQARAERQMAASQRAVNEL 396
            PV  V++AG+ +      +   ++ A++  EV E+++ L  L+TI+T +PL+GLLGTI GM+G F  ++E     P A T     GI EALIATA GI+VAV  L+ HNFFQ+++E+  A  +R    L
Sbjct:   67 PVTRVLKAGLMSRTNRAAL---AMEAEATGEVREMNRYLPALDTIITLAPLLGLLGTIVGMIGSFGIIAEAGLSKPLAVTG----GISEALIATAAGIIVAVVTLIPHNFFQSKSEKATAEIERYATRL 188          
BLAST of mRNA_P-wetherbeei_contig20149.2.1 vs. uniprot
Match: A0A7C3D144_9BACT (MotA/TolQ/ExbB proton channel family protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7C3D144_9BACT)

HSP 1 Score: 86.7 bits (213), Expect = 2.710e-18
Identity = 52/142 (36.62%), Postives = 81/142 (57.04%), Query Frame = 1
Query:    7 GPVPAVVEAGIKNWDQSDRVMEDSISAQSQVEVEELHKNLTVLETIVTASPLVGLLGTITGMMGVFRAVSEKLAQSPQADTSTILAGIGEALIATATGILVAVFCLLCHNFFQARAER---QMAASQRAVNELLLLRHQMKG 423
            GPV  + +A I+  D+    ++++I A  + EV +L +NL  L T+   SPL+G LGT+TGM+  F  V    AQ+   D S +  GI EALI TA G+ V +  L+ +N+ Q + ER   +M  S   + ++LL R ++ G
Sbjct:   70 GPVAKITKAAIEKHDRPREEIKEAIEAAGKAEVFQLERNLGALGTVAAISPLIGFLGTVTGMIRAFMQVQ---AQAGNVDASVLAGGIWEALITTAAGLTVGIPALIFYNWLQGKIERVVFEMQVSSTEILDMLLERERVHG 208          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20149.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7Z9Q244_9BACT4.660e-2958.65MotA/TolQ/ExbB proton channel family protein (Frag... [more]
UPI001987DB251.640e-2241.01MotA/TolQ/ExbB proton channel family protein n=1 T... [more]
A0A2V2S4X6_9BACT1.720e-2144.44MotA_ExbB domain-containing protein n=1 Tax=Verruc... [more]
A0A7V4AU37_9BACT1.620e-1935.82MotA/TolQ/ExbB proton channel family protein n=1 T... [more]
A0A1F9LVZ0_9DELT4.080e-1941.48MotA_ExbB domain-containing protein n=2 Tax=unclas... [more]
A0A7V0MBK0_9BACT4.640e-1938.17MotA/TolQ/ExbB proton channel family protein n=2 T... [more]
A0A6N7M1G0_9FIRM5.500e-1937.40MotA_ExbB domain-containing protein n=1 Tax=Clostr... [more]
A0A7Y2G6K2_9BACT1.090e-1838.17MotA/TolQ/ExbB proton channel family protein n=1 T... [more]
A0A1F8XHS4_9DELT1.630e-1841.86MotA_ExbB domain-containing protein n=1 Tax=Deltap... [more]
A0A7C3D144_9BACT2.710e-1836.62MotA/TolQ/ExbB proton channel family protein n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20149contigP-wetherbeei_contig20149:802..1227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1173020.Cha6605_2278
PFAMsMotA_ExbB
Model size426
Max annot lvl1117|Cyanobacteria
KEGG koko:K03561
KEGG TC1.A.30.2.1
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.72e-18
EggNOG OGsCOG0811@1|root,COG0811@2|Bacteria,1G1RE@1117|Cyanobacteria
DescriptionMotA TolQ ExbB proton channel
Cds size426
COG categoryU
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186192.4005222-CDS-P-wetherbeei_contig20149:801..12271683186192.4005222-CDS-P-wetherbeei_contig20149:801..1227Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20149 802..1227 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20149.2.1prot_P-wetherbeei_contig20149.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20149 802..1227 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20149.2.1

>prot_P-wetherbeei_contig20149.2.1 ID=prot_P-wetherbeei_contig20149.2.1|Name=mRNA_P-wetherbeei_contig20149.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=142bp
LSGPVPAVVEAGIKNWDQSDRVMEDSISAQSQVEVEELHKNLTVLETIVT
ASPLVGLLGTITGMMGVFRAVSEKLAQSPQADTSTILAGIGEALIATATG
ILVAVFCLLCHNFFQARAERQMAASQRAVNELLLLRHQMKG*
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mRNA from alignment at P-wetherbeei_contig20149:802..1227-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20149.2.1 ID=mRNA_P-wetherbeei_contig20149.2.1|Name=mRNA_P-wetherbeei_contig20149.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig20149:802..1227- (Phaeothamnion wetherbeei SAG_119_79)
TTGAGTGGACCCGTGCCCGCGGTTGTCGAGGCGGGGATCAAGAACTGGGA TCAGTCGGATCGCGTGATGGAGGATTCCATATCGGCGCAGTCTCAGGTAG AAGTCGAAGAGCTGCACAAGAATCTGACCGTGCTGGAAACGATTGTGACG GCGTCGCCCCTGGTTGGACTGCTGGGAACGATTACCGGTATGATGGGCGT GTTCCGGGCGGTTTCCGAGAAGCTGGCCCAGAGTCCTCAAGCCGATACTT CCACGATTCTCGCTGGAATCGGTGAGGCACTGATTGCGACGGCCACGGGT ATTCTGGTGGCCGTGTTTTGCTTGCTCTGCCACAATTTCTTCCAGGCTCG CGCCGAGCGTCAGATGGCGGCTTCCCAGCGCGCGGTGAACGAGCTGCTGC TGCTGCGCCATCAGATGAAGGGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20149:802..1227-

>mRNA_P-wetherbeei_contig20149.2.1 ID=mRNA_P-wetherbeei_contig20149.2.1|Name=mRNA_P-wetherbeei_contig20149.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=426bp|location=Sequence derived from alignment at P-wetherbeei_contig20149:802..1227- (Phaeothamnion wetherbeei SAG_119_79)
TTGAGTGGACCCGTGCCCGCGGTTGTCGAGGCGGGGATCAAGAACTGGGA
TCAGTCGGATCGCGTGATGGAGGATTCCATATCGGCGCAGTCTCAGGTAG
AAGTCGAAGAGCTGCACAAGAATCTGACCGTGCTGGAAACGATTGTGACG
GCGTCGCCCCTGGTTGGACTGCTGGGAACGATTACCGGTATGATGGGCGT
GTTCCGGGCGGTTTCCGAGAAGCTGGCCCAGAGTCCTCAAGCCGATACTT
CCACGATTCTCGCTGGAATCGGTGAGGCACTGATTGCGACGGCCACGGGT
ATTCTGGTGGCCGTGTTTTGCTTGCTCTGCCACAATTTCTTCCAGGCTCG
CGCCGAGCGTCAGATGGCGGCTTCCCAGCGCGCGGTGAACGAGCTGCTGC
TGCTGCGCCATCAGATGAAGGGGTAG
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