mRNA_P-wetherbeei_contig20128.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20128.2.1
Unique NamemRNA_P-wetherbeei_contig20128.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20128.2.1 vs. uniprot
Match: A0A6L8EKT9_9GAMM (Type II toxin-antitoxin system VapC family toxin n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8EKT9_9GAMM)

HSP 1 Score: 104 bits (260), Expect = 1.110e-24
Identity = 55/116 (47.41%), Postives = 76/116 (65.52%), Query Frame = 3
Query:  255 GKRRRLLRFWDSSAVLPLIILESRSLETLALLRANSGMLVWWGTQTECQSAIWRRNREGHETLAESQVLLNSLHSLLGGATEVTPSRAVRTQAGSLLAKHALRAADALQLAAAVHW 602
            G  RRL++FWD+SA++PL + E  +     LL  +S ++VWWGT TEC SA+ R+ R G  T  E +   + LH+L    +E+ PS A+R+ A  LLA H LR+ADALQLAAA+ W
Sbjct:   32 GALRRLVKFWDTSAIVPLYVHEPNTSVVRELLATDSSIIVWWGTHTECISALMRQVRTGGITSPEERACRHVLHTLAQSWSEIQPSDALRSMAERLLAVHPLRSADALQLAAALQW 147          
BLAST of mRNA_P-wetherbeei_contig20128.2.1 vs. uniprot
Match: A0A651ECD1_9BACT (PIN domain-containing protein n=1 Tax=Gemmatimonadales bacterium TaxID=2448054 RepID=A0A651ECD1_9BACT)

HSP 1 Score: 101 bits (252), Expect = 1.890e-23
Identity = 60/136 (44.12%), Postives = 80/136 (58.82%), Query Frame = 3
Query:  198 LSGSPSHSKNRLPRGRPAP-GKRRRLLRFWDSSAVLPLIILESRSLETLALLRANSGMLVWWGTQTECQSAIWRRNREGHETLAESQVLLNSLHSLLGGATEVTPSRAVRTQAGSLLAKHALRAADALQLAAAVHW 602
            L G  S  ++   + R  P G RRRL+RFWD+S V+PL++ +  S     LL ++  +  WWGT  EC SA  R  REG  T+ E   +L  L  L G   E+ PS  +R +AG LL  H+L+AADALQLAAA+ W
Sbjct:    7 LPGHSSTGRSGRAKSRRGPRGTRRRLVRFWDTSGVVPLLLQQEASDVVRPLLESDPMIAAWWGTPVECASAAARLRREGLLTVDEEVQVLALLEDLEGAWFEIRPSEPLRREAGRLLRTHSLKAADALQLAAAITW 142          
BLAST of mRNA_P-wetherbeei_contig20128.2.1 vs. uniprot
Match: A0A3N5XGX8_9BACT (PIN domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A3N5XGX8_9BACT)

HSP 1 Score: 99.4 bits (246), Expect = 4.780e-23
Identity = 53/108 (49.07%), Postives = 70/108 (64.81%), Query Frame = 3
Query:  273 LRFWDSSAVLPLIILESRSLETLALLRANSGMLVWWGTQTECQSAIWRRNREGHETLAESQVLLNSLHSLLGGATEVTPSRAVRTQAGSLLAKHALRAADALQLAAAV 596
            ++FWDSSA++PL++ E+ +   L +L  +  +LVWWGT  EC SA+ RR REG     ++   +  L SL     EV PS AVR+QA  L+  H LRAADALQLAAAV
Sbjct:    1 MKFWDSSAIVPLLVKEASTESLLKMLEGDQQLLVWWGTPVECTSALARREREGSMPADQTTAAIERLVSLATAWDEVAPSVAVRSQARRLVRLHPLRAADALQLAAAV 108          
BLAST of mRNA_P-wetherbeei_contig20128.2.1 vs. uniprot
Match: A0A7W1IAK3_9BACT (PIN domain-containing protein n=1 Tax=Gemmatimonadaceae bacterium TaxID=2026741 RepID=A0A7W1IAK3_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 2.450e-22
Identity = 53/110 (48.18%), Postives = 68/110 (61.82%), Query Frame = 3
Query:  273 LRFWDSSAVLPLIILESRSLETLALLRANSGMLVWWGTQTECQSAIWRRNREGHETLAESQVLLNSLHSLLGGATEVTPSRAVRTQAGSLLAKHALRAADALQLAAAVHW 602
            +RFWDSSA++PL++ +S S     L R + G++VWWGT  EC SAI R +R G          L+ L ++ G  TEV P+  VR  A  LL  H LRAADALQLAAA+ W
Sbjct:    1 MRFWDSSAIVPLLLEQSTSRGLTVLARDSEGLVVWWGTIVECTSAITRTSRAGFIPATAETRALSLLTTIAGTWTEVQPTEVVRNTARRLLRVHPLRAADALQLAAALAW 110          
BLAST of mRNA_P-wetherbeei_contig20128.2.1 vs. uniprot
Match: A0A7C2IN19_9BACT (PIN domain-containing protein n=1 Tax=candidate division NC10 bacterium TaxID=2072417 RepID=A0A7C2IN19_9BACT)

HSP 1 Score: 97.4 bits (241), Expect = 2.590e-22
Identity = 53/118 (44.92%), Postives = 73/118 (61.86%), Query Frame = 3
Query:  279 FWDSSAVLPLIILESRSLETLALLRANSGMLVWWGTQTECQSAIWRRNREGHETLAESQVLLNSLHSLLGGATEVTPSRAVRTQAGSLLAKHALRAADALQLAAAVHWRTHTQQAIPF 632
            FWDSSAV+PL++ ++RS     LLR+++   +WW +  ECQSA++RR+REG          L  L +L+     V P+  +R +AG LLA H LRAADALQLAAA+ W   + Q   F
Sbjct:    2 FWDSSAVVPLLLPDARSAGIATLLRSDAEPALWWASPVECQSALYRRHREGGLPTTALTQALERLKALVADVDIVAPTPPLRERAGRLLAGHPLRAADALQLAAALVWCDESPQGDAF 119          
BLAST of mRNA_P-wetherbeei_contig20128.2.1 vs. uniprot
Match: A0A3N5QWI8_9DELT (PIN domain-containing protein n=1 Tax=Desulfobacteraceae bacterium TaxID=2049433 RepID=A0A3N5QWI8_9DELT)

HSP 1 Score: 97.1 bits (240), Expect = 3.650e-22
Identity = 57/123 (46.34%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  273 LRFWDSSAVLPLIILESRSLETLALLRANSGMLVWWGTQTECQSAIWRRNREGHETLAESQVLLNSLHSLLGGAT---EVTPSRAVRTQAGSLLAKHALRAADALQLAAAVHWRTHTQQAIPF 632
            ++FWDSSAV+PL + E  S++   +L+ +  M+VWW T+ EC SA+ RR REG     + + L+N+   L   AT   EV P   VR +A  LLA H LRAADALQLAAA+ W   T Q + F
Sbjct:    1 MKFWDSSAVIPLCLNEPASVQAGEILKIDEDMVVWWSTRIECLSALERRRREG---ALQVKTLMNARTILFALATAWSEVLPGERVRQRAERLLAVHPLRAADALQLAAALIWAEETPQDLEF 120          
BLAST of mRNA_P-wetherbeei_contig20128.2.1 vs. uniprot
Match: A0A538A4L0_9ACTN (Type II toxin-antitoxin system VapC family toxin n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A538A4L0_9ACTN)

HSP 1 Score: 96.7 bits (239), Expect = 6.370e-22
Identity = 53/111 (47.75%), Postives = 71/111 (63.96%), Query Frame = 3
Query:  273 LRFWDSSAVLPLIILESRSLETLALLRANSGMLVWWGTQTECQSAIWRRNREGHETLAESQVLLNSLHSLLGGATEVTPSRAVRTQAGSLLAKHALRAADALQLAAAVHWR 605
            +RFWD+SA++PL+  E  S +   LLR ++ M+VWWG++ EC SA+ RR RE     A ++  +  L +L    +EV PS A+R QA   LA H LRA DALQLAAA  WR
Sbjct:    1 MRFWDASALVPLLFSERWSEQARKLLREDAAMVVWWGSRVECVSALRRRERESALDAAGARQAVALLDALASAWSEVLPSDALRAQAERALAVHPLRAPDALQLAAAFTWR 111          
BLAST of mRNA_P-wetherbeei_contig20128.2.1 vs. uniprot
Match: A0A2V7GJX2_9BACT (Uncharacterized protein n=1 Tax=Candidatus Rokubacteria bacterium TaxID=2053607 RepID=A0A2V7GJX2_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 7.250e-22
Identity = 53/121 (43.80%), Postives = 79/121 (65.29%), Query Frame = 3
Query:  279 FWDSSAVLPLIILESRSLETLALLRANSGMLVWWGTQTECQSAIWRRNREG---HETLAESQVLLNSLHSLLGGATEVTPSRAVRTQAGSLLAKHALRAADALQLAAAVHWRTHTQQAIPF 632
            FWD+SA++P ++ E RS+ T++LLRA+  +++WW +  ECQSA++R++RE    H+ L E+ V    L  L+  A  + P+  +R +AG L+A H LRAADALQLAAA+ W     Q   F
Sbjct:    2 FWDASALVPTLVPEVRSVATVSLLRADRQVILWWVSPVECQSALYRQHREDKIPHDLLNEALV---RLRGLVEDADFIAPTIGLRERAGRLVASHPLRAADALQLAAALVWCDEAPQGAAF 119          
BLAST of mRNA_P-wetherbeei_contig20128.2.1 vs. uniprot
Match: A0A522TFM3_9BACT (PIN domain-containing protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A522TFM3_9BACT)

HSP 1 Score: 95.9 bits (237), Expect = 1.080e-21
Identity = 49/108 (45.37%), Postives = 71/108 (65.74%), Query Frame = 3
Query:  273 LRFWDSSAVLPLIILESRSLETLALLRANSGMLVWWGTQTECQSAIWRRNREGHETLAESQVLLNSLHSLLGGATEVTPSRAVRTQAGSLLAKHALRAADALQLAAAV 596
            +RFWD+SA+ PLI+ +  +    AL+  + GM+VWWG++ EC S++ RR REG    AES+     L  ++    EV P+  +R ++  LL +H+LRAADALQLAAAV
Sbjct:    1 MRFWDASALSPLIVTDVFTARAEALMHQDEGMMVWWGSRVECASSLARREREGRLAAAESEASWRRLERMVVTWNEVAPNDDLRAESVRLLRRHSLRAADALQLAAAV 108          
BLAST of mRNA_P-wetherbeei_contig20128.2.1 vs. uniprot
Match: A0A525WMZ7_9BACT (Type II toxin-antitoxin system VapC family toxin n=1 Tax=Nitrospira sp. CG24E TaxID=1985129 RepID=A0A525WMZ7_9BACT)

HSP 1 Score: 95.5 bits (236), Expect = 1.560e-21
Identity = 50/110 (45.45%), Postives = 68/110 (61.82%), Query Frame = 3
Query:  273 LRFWDSSAVLPLIILESRSLETLALLRANSGMLVWWGTQTECQSAIWRRNREGHETLAESQVLLNSLHSLLGGATEVTPSRAVRTQAGSLLAKHALRAADALQLAAAVHW 602
            ++FWD+SAVLPL + E  +L    L   +  ++ WWGT  EC SA+ R  RE   T A+     + L++L+   TE+ PS  VR QAG +L  H LRAADA+QLAAA+ W
Sbjct:    1 MKFWDASAVLPLCLQEPHTLNLKRLSARDGAVVAWWGTAVECYSALARLRREEALTSADEMQARSVLNALMAAWTEIEPSIVVREQAGRVLLLHPLRAADAMQLAAAIVW 110          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20128.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L8EKT9_9GAMM1.110e-2447.41Type II toxin-antitoxin system VapC family toxin n... [more]
A0A651ECD1_9BACT1.890e-2344.12PIN domain-containing protein n=1 Tax=Gemmatimonad... [more]
A0A3N5XGX8_9BACT4.780e-2349.07PIN domain-containing protein n=1 Tax=Acidobacteri... [more]
A0A7W1IAK3_9BACT2.450e-2248.18PIN domain-containing protein n=1 Tax=Gemmatimonad... [more]
A0A7C2IN19_9BACT2.590e-2244.92PIN domain-containing protein n=1 Tax=candidate di... [more]
A0A3N5QWI8_9DELT3.650e-2246.34PIN domain-containing protein n=1 Tax=Desulfobacte... [more]
A0A538A4L0_9ACTN6.370e-2247.75Type II toxin-antitoxin system VapC family toxin n... [more]
A0A2V7GJX2_9BACT7.250e-2243.80Uncharacterized protein n=1 Tax=Candidatus Rokubac... [more]
A0A522TFM3_9BACT1.080e-2145.37PIN domain-containing protein n=1 Tax=Acidobacteri... [more]
A0A525WMZ7_9BACT1.560e-2145.45Type II toxin-antitoxin system VapC family toxin n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20128contigP-wetherbeei_contig20128:613..1244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1123386.AUIW01000009_gene1813
PFAMsPhdYeFM_antitox
Model size632
Max annot lvl1297|Deinococcus-Thermus
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.28e-11
EggNOG OGs2DGZ3@1|root,2ZXUD@2|Bacteria,1WKRC@1297|Deinococcus-Thermus
DescriptionAntitoxin Phd_YefM, type II toxin-antitoxin system
Cds size276
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186191.8512378-CDS-P-wetherbeei_contig20128:612..8881683186191.8512378-CDS-P-wetherbeei_contig20128:612..888Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20128 613..888 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186191.8632908-UTR-P-wetherbeei_contig20128:888..12441683186191.8632908-UTR-P-wetherbeei_contig20128:888..1244Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20128 889..1244 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20128.2.1prot_P-wetherbeei_contig20128.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20128 613..888 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20128.2.1

>prot_P-wetherbeei_contig20128.2.1 ID=prot_P-wetherbeei_contig20128.2.1|Name=mRNA_P-wetherbeei_contig20128.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=92bp
MKQASIAQAKAQLSALIAHVKTGEEVLLTDRGRPVARIVPLQEMDDGVYA
RLVGLGVIVPPDHTEIYPGPQVIQRTGSLVDALLQERDEGY*
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mRNA from alignment at P-wetherbeei_contig20128:613..1244+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20128.2.1 ID=mRNA_P-wetherbeei_contig20128.2.1|Name=mRNA_P-wetherbeei_contig20128.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=632bp|location=Sequence derived from alignment at P-wetherbeei_contig20128:613..1244+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCAAGCATCCATAGCTCAAGCCAAAGCCCAGTTAAGTGCACTGAT TGCTCATGTAAAAACGGGTGAAGAAGTTCTTCTCACCGACCGAGGCCGTC CCGTAGCGCGTATTGTTCCTCTCCAGGAGATGGACGATGGCGTCTACGCA AGACTTGTAGGGCTTGGCGTCATCGTGCCCCCCGATCATACCGAAATCTA TCCGGGTCCCCAAGTCATTCAAAGAACAGGCTCCCTCGTGGACGCCCTGC TCCAGGAAAGAGACGAAGGCTATTGAGGTTCTGGGATTCGTCCGCGGTTC TGCCGCTGATCATTTTGGAGAGCCGAAGCTTGGAAACCCTTGCACTTTTA CGCGCGAATTCTGGGATGCTGGTTTGGTGGGGAACTCAGACGGAGTGTCA GTCTGCAATCTGGAGGCGAAATCGTGAAGGCCACGAGACGCTAGCCGAGT CGCAGGTTCTCCTGAATAGCTTACACTCGCTTCTCGGCGGCGCGACAGAA GTCACTCCATCTCGTGCCGTCCGGACACAGGCAGGCAGTCTCCTCGCCAA GCACGCTTTGAGAGCCGCGGACGCCTTGCAGTTGGCGGCAGCCGTACATT GGAGAACTCATACCCAACAGGCCATACCTTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20128:613..1244+

>mRNA_P-wetherbeei_contig20128.2.1 ID=mRNA_P-wetherbeei_contig20128.2.1|Name=mRNA_P-wetherbeei_contig20128.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=276bp|location=Sequence derived from alignment at P-wetherbeei_contig20128:613..1244+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAAGCAAGCATCCATAGCTCAAGCCAAAGCCCAGTTAAGTGCACTGAT
TGCTCATGTAAAAACGGGTGAAGAAGTTCTTCTCACCGACCGAGGCCGTC
CCGTAGCGCGTATTGTTCCTCTCCAGGAGATGGACGATGGCGTCTACGCA
AGACTTGTAGGGCTTGGCGTCATCGTGCCCCCCGATCATACCGAAATCTA
TCCGGGTCCCCAAGTCATTCAAAGAACAGGCTCCCTCGTGGACGCCCTGC
TCCAGGAAAGAGACGAAGGCTATTGA
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