mRNA_P-wetherbeei_contig20125.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20125.1.1
Unique NamemRNA_P-wetherbeei_contig20125.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig20125.1.1 vs. uniprot
Match: A0A2Z6MBW3_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MBW3_TRISU)

HSP 1 Score: 52.8 bits (125), Expect = 7.700e-6
Identity = 31/87 (35.63%), Postives = 45/87 (51.72%), Query Frame = 1 
Query:   31 STSNNLGYCSACAVANSRHLPTPKMTRRLETAPLELIYIDLSGEADPAARSAH-YICMFIYGFTTYRWAYMIELKSDAIKALALFVN 288
            S  N+   C ACAV  S  L  P ++  +   P E+++ DL G A  A+   + Y   F+  +T Y W Y++  KSDA+KA   FV 
Sbjct:  566 SNKNHTFPCIACAVGKSHRLYAP-LSNTMYIKPFEVVHCDLWGPAPFASYYGYNYYIAFVDTYTKYTWFYLLNQKSDALKAFNQFVK 651
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BLAST of mRNA_P-wetherbeei_contig20125.1.1 vs. uniprot
Match: A0A2K3LRF8_TRIPR (Histone deacetylase (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3LRF8_TRIPR)

HSP 1 Score: 50.8 bits (120), Expect = 3.520e-5
Identity = 30/87 (34.48%), Postives = 42/87 (48.28%), Query Frame = 1 
Query:   31 STSNNLGYCSACAVANSRHLPTPKMTRRLETAPLELIYIDLSGEAD-PAARSAHYICMFIYGFTTYRWAYMIELKSDAIKALALFVN 288
            S  N    C AC V  S  L  P ++  + T P E+I+ DL G A   +    +Y   F+  +T Y W Y++  KSDA+KA   F  
Sbjct:  559 SNKNTAFTCVACCVGKSHRLYAP-LSNIVYTKPFEVIHCDLWGPAPFQSYYGYNYYITFVDTYTKYTWIYLLNQKSDALKAFTQFAT 644
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20125.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2Z6MBW3_TRISU7.700e-635.63Integrase catalytic domain-containing protein n=1 ... [more]
A0A2K3LRF8_TRIPR3.520e-534.48Histone deacetylase (Fragment) n=1 Tax=Trifolium p... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20125contigP-wetherbeei_contig20125:438..728 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog15368.BRADI2G31610.1
PFAMsDUF4219,RVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Model size291
Max annot lvl35493|Streptophyta
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.77e-07
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,37THH@33090|Viridiplantae,3GG2K@35493|Streptophyta,3M5VU@4447|Liliopsida,3IIIB@38820|Poales
Descriptiongag-polypeptide of LTR copia-type
Cds size291
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186191.766534-CDS-P-wetherbeei_contig20125:437..7281683186191.766534-CDS-P-wetherbeei_contig20125:437..728Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20125 438..728 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20125.1.1prot_P-wetherbeei_contig20125.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20125 438..728 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20125.1.1

>prot_P-wetherbeei_contig20125.1.1 ID=prot_P-wetherbeei_contig20125.1.1|Name=mRNA_P-wetherbeei_contig20125.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=97bp
EKPAIADIKPSTSNNLGYCSACAVANSRHLPTPKMTRRLETAPLELIYID
LSGEADPAARSAHYICMFIYGFTTYRWAYMIELKSDAIKALALFVNE
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mRNA from alignment at P-wetherbeei_contig20125:438..728+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20125.1.1 ID=mRNA_P-wetherbeei_contig20125.1.1|Name=mRNA_P-wetherbeei_contig20125.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig20125:438..728+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAAGCCTGCTATTGCTGACATTAAGCCCTCCACCTCGAACAACCTCGG
CTACTGCAGCGCCTGTGCCGTTGCCAACAGCCGGCACCTGCCTACGCCGA
AGATGACGCGACGACTCGAGACAGCGCCGCTTGAGCTGATCTACATCGAT
CTATCGGGCGAGGCAGATCCGGCCGCCAGGTCCGCGCACTACATCTGCAT
GTTCATCTACGGTTTTACGACCTACCGTTGGGCCTACATGATCGAGCTAA
AGAGCGACGCCATCAAGGCGCTCGCTCTCTTCGTGAACGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20125:438..728+

>mRNA_P-wetherbeei_contig20125.1.1 ID=mRNA_P-wetherbeei_contig20125.1.1|Name=mRNA_P-wetherbeei_contig20125.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=291bp|location=Sequence derived from alignment at P-wetherbeei_contig20125:438..728+ (Phaeothamnion wetherbeei SAG_119_79)
GAGAAGCCTGCTATTGCTGACATTAAGCCCTCCACCTCGAACAACCTCGG
CTACTGCAGCGCCTGTGCCGTTGCCAACAGCCGGCACCTGCCTACGCCGA
AGATGACGCGACGACTCGAGACAGCGCCGCTTGAGCTGATCTACATCGAT
CTATCGGGCGAGGCAGATCCGGCCGCCAGGTCCGCGCACTACATCTGCAT
GTTCATCTACGGTTTTACGACCTACCGTTGGGCCTACATGATCGAGCTAA
AGAGCGACGCCATCAAGGCGCTCGCTCTCTTCGTGAACGAG
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