mRNA_P-wetherbeei_contig2012.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2012.1.1
Unique NamemRNA_P-wetherbeei_contig2012.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig2012.1.1 vs. uniprot
Match: Q2JXG1_SYNJA (Cryptochrome DASH n=5 Tax=unclassified Synechococcus TaxID=2626047 RepID=Q2JXG1_SYNJA)

HSP 1 Score: 128 bits (321), Expect = 2.010e-30
Identity = 101/283 (35.69%), Postives = 134/283 (47.35%), Query Frame = 1
Query:    1 LPTFCLDPALFTSDIFGFPQMGRYRARLLLESAREVRENLRGRGSELHIIQRSPSEALPDLCQAMGANTIIFHAGATTEQRNEDAAVSDVLIRLGVEVLRLFDITLYEPSDLPWVIPQHPQNCFNRFRHAVRLKVP-RVPLDGLGDGKRLPPLPSPIPGG--GGKLPSLHGLGYARDPLAATAAGTRAAPAVHALRGGEVTALLQL--------RAELSRAAQSSYEAPNLSS-LEPWLELGCLSPRTVYAEAAAFRSSC----PTVWHAVEFYLQMRDHFVF 801
            +P +CLDP  F    FGFP+ G +RA+ LLES  ++R+ LR RGS+L I Q  P + +P L +  G   +  H    TE+     A+   L  LG+ +   +  TLY P+DLP+ +   P+  F RFR  V  K   R PL        +P LP P+P G   G LP+L  LG +  P    A    A        GG   A  +L        R  + +  ++    PN SS L  WL LGCLSPRTVYAE   +         T W   E  L  RD+F F
Sbjct:   30 IPLYCLDPRHFGRTAFGFPKTGPFRAQFLLESLADLRQQLRARGSDLVIRQGQPEQVIPALAREWGVKAVYAHEEVGTEEEAVARALQQALQPLGIPLHLEWGHTLYHPADLPFALADLPE-VFTRFRQQVEAKAAIRAPLP-------IPSLP-PLPPGLDPGPLPTLAELGLSLPPPDPRARFVYA--------GGSTAAQARLQTYIWDLDRLRVYKETRNGMLDPNDSSRLSAWLALGCLSPRTVYAEVKRYEEERVRNESTYWLVFE--LLWRDYFRF 293          
BLAST of mRNA_P-wetherbeei_contig2012.1.1 vs. uniprot
Match: Q2JN91_SYNJB (Cryptochrome DASH n=2 Tax=unclassified Synechococcus TaxID=2626047 RepID=Q2JN91_SYNJB)

HSP 1 Score: 123 bits (309), Expect = 9.540e-29
Identity = 102/277 (36.82%), Postives = 135/277 (48.74%), Query Frame = 1
Query:    1 LPTFCLDPALFTSDIFGF-PQMGRYRARLLLESAREVRENLRGRGSELHIIQRSPSEALPDLCQAMGANTIIFHAGATTEQRNEDAAVSDVLIRLGVEVLRLFDITLYEPSDLPWVIPQHPQNCFNRFRHAVRLKVP-RVPLDGLGDGKRLPPLPSPIPGGGGKLPSLHGLGY---ARDPLAATAAGTRAAPAVHALRGGEVTALLQLRAELSRAAQSSYEAPNLSS-LEPWLELGCLSPRTVYAEAAAFRSSC----PTVWHAVEFYLQMRDHFVF 801
            +P +CLDP  F     G  P+   +R + LLES  ++R+ LR RGS+L I Q  P + +P L Q  G   +  H    TE++   AAV   L  LG+ +   +  TLY P DLP+ + Q P+  F RFR  V    P R PL        +PPLPS +  G   LP+L  LG    ARDP A     T  + A HA        L +LR  + +  ++    P+ SS L  WL LGC+SPRTVYAE   +         T W   E  L  RD+F F
Sbjct:   30 IPLYCLDPRQFGETSLGLRPRTSPFRGQFLLESLADLRQQLRSRGSDLVIRQGQPEQVIPTLAQEWGVEAVYAHEEVGTEEKEVAAAVERALRSLGIRLQVDWGHTLYHPEDLPFCLSQLPE-LFTRFRKQVEGSTPIRDPLP----IPSIPPLPSGLDPG--PLPTLASLGLSSPARDPRARFTY-TGGSTAAHARLQTYFWDLDRLR--IYKETRNGMLDPDDSSRLSAWLALGCISPRTVYAEVKRYEQERVRNESTYWLVFE--LLWRDYFRF 294          
BLAST of mRNA_P-wetherbeei_contig2012.1.1 vs. uniprot
Match: A0A8K1MT28_9CYAN (DASH family cryptochrome n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A8K1MT28_9CYAN)

HSP 1 Score: 122 bits (306), Expect = 2.390e-28
Identity = 98/283 (34.63%), Postives = 138/283 (48.76%), Query Frame = 1
Query:    1 LPTFCLDPALFTSDIFGFPQMGRYRARLLLESAREVRENLRGRGSELHIIQRSPSEALPDLCQAMGANTIIFHAGATTEQRNEDAAVSDVLIRLGVEVLRLFDITLYEPSDLPWVIPQHPQNCFNRFRHAVRLKVPRVPLDGLGDGKRLPPLP--SPIPGGG-GKLPSLHGLGYARDPLAATAAGTRAAPAVHALRGGEVTALLQLRAEL-SRAAQSSYE--------APNLSSLEPWLELGCLSPRTVYAEAAAFRS----SCPTVWHAVEFYLQMRDHFVF 801
            +P +C D   F    FGFP+MG YR++ L E+  ++R+NLR  GS+L I Q  P E +P+L +A+  + +I     TTE+R  + AV   L   GV + +++ +TLY PS LP+ I + P + F  FR AV      +P         +PPL   SP+P    G+LP+L  LG    PL       R        RGGE   L +L+    +R     Y+        A   S   PWL LGCLSPR + AE   + +    +  T W   E  L  RD+F F
Sbjct:   31 IPFYCFDSREFGKTAFGFPKMGAYRSQFLREAVADLRQNLRRLGSDLVIRQGKPEEVIPELVRALKIDRVICEEEVTTEERQVEEAVETQLA--GVPLEKVWGMTLYHPSQLPFPIAELP-DVFTHFRKAVETSAEVMPP--------IPPLREISPLPDVAVGELPTLQELGV-EPPLMDERGVLR-------FRGGESAGLQRLQDYFWNRDCLQRYKLTRNGMLGADYSSKFSPWLALGCLSPRQIVAEVRRYEAERVANDSTYWLVFE--LLWRDYFRF 292          
BLAST of mRNA_P-wetherbeei_contig2012.1.1 vs. uniprot
Match: B4VS67_9CYAN (Cryptochrome DASH n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 TaxID=118168 RepID=B4VS67_9CYAN)

HSP 1 Score: 122 bits (305), Expect = 3.530e-28
Identity = 92/280 (32.86%), Postives = 134/280 (47.86%), Query Frame = 1
Query:    1 LPTFCLDPALFTSDIFGFPQMGRYRARLLLESAREVRENLRGRGSELHIIQRSPSEALPDLCQAMGANTIIFHAGATTEQRNEDAAVSDVLIRLGVEVLRLFDITLYEPSDLPWVIPQHPQNCFNRFRHAVRLKVPRVPLDGLGDGKRLPPLPSPIPGGGGKLPSLHGLGYARDPLAATAAGTRAAPAVHALRGGEVTALLQLR--------AELSRAAQSSYEAPNLSS-LEPWLELGCLSPRTVYAEAAAFRS----SCPTVWHAVEFYLQMRDHFVF 801
            +P +C D  LF +  FGFP+ G +RA+ LLES  ++REN+R RGS L + +  P   +P L + +   T+ FH   T+E+   ++A+ + L  +G+ V   +  TLY P DLP+ + + P+  F  FR  V  K    P       KRLP LPS   G   +LP L   G     L +     RA   V   +GGE   L +L          ++ +  ++     + SS   PWL LGCLSPR +Y +   +      +  T W   E  L  RD F F
Sbjct:   33 IPCYCFDDRLFHTTSFGFPKTGAFRAKFLLESVADLRENVRSRGSNLLVRRGLPENVIPTLAKELDITTVYFHQEVTSEEVAVESALKNALSEIGITVQTFWGSTLYHPDDLPFNLLKIPE-LFTNFRKQVEKKSTIYPP--FPTPKRLPSLPSVEVG---ELPQLADFG-----LESPIFDERA---VLPFQGGETAGLARLNDYFWKKDCLKVYKQTRNGMLGSDYSSKFSPWLALGCLSPRFIYEQVQQYEQEQIKNDSTYWLVFE--LIWRDFFRF 296          
BLAST of mRNA_P-wetherbeei_contig2012.1.1 vs. uniprot
Match: A0A7T5E1P2_9CYAN (Cryptochrome DASH n=1 Tax=Leptolyngbya sp. BL0902 TaxID=1115757 RepID=A0A7T5E1P2_9CYAN)

HSP 1 Score: 121 bits (303), Expect = 6.650e-28
Identity = 90/280 (32.14%), Postives = 137/280 (48.93%), Query Frame = 1
Query:    1 LPTFCLDPALFTSDIFGFPQMGRYRARLLLESAREVRENLRGRGSELHIIQRSPSEALPDLCQAMGANTIIFHAGATTEQRNEDAAVSDVLIRLGVEVLRLFDITLYEPSDLPWVIPQHPQNCFNRFRHAVRLKVPRVPLDGLGDGKRLPPLPSPIPGGGGKLPSLHGLGYARDPLAATAAGTRAAPAVHALRGGEVTALLQLR--------AELSRAAQSSYEAPNLSS-LEPWLELGCLSPRTVYAEAAAFR----SSCPTVWHAVEFYLQMRDHFVF 801
            +P +C DP  F    FGF + G +RA+ LLES  ++R++L+  GS+L +    P   +P L + +G  T+++H   T E+   ++A+   L  LGV+    +  TLY P +LP+ + + P+  F +FR  V  +      + L   K LPPLP+  PG    +P+L  LG     L A  A  R    V   +GGE   L +L+         ++ +  ++     N SS   PWL LGCLSPR +YA    +      +  T W   E  L  RD+F F
Sbjct:   30 IPCYCFDPRQFGQTAFGFAKTGAFRAQFLLESVADLRQSLQSLGSDLVVRMGRPEVEIPALVRELGIETVVWHEEVTAEEVAVESALEAKLATLGVKTEVYWGATLYHPDNLPFDLDRVPE-VFTQFRKQVEQRS--TVDEALPTPKALPPLPAITPG---PIPALADLG-----LTAPKADPRG---VLPFQGGEAAGLARLQDYVWTADCLKVYKETRNGMVGANYSSKFSPWLALGCLSPRQIYATVQRYERERIKNDSTYWLVFE--LLWRDYFRF 293          
BLAST of mRNA_P-wetherbeei_contig2012.1.1 vs. uniprot
Match: A0A8K2A7Z2_9CYAN (DASH family cryptochrome n=1 Tax=Petrachloros mirabilis ULC683 TaxID=2781853 RepID=A0A8K2A7Z2_9CYAN)

HSP 1 Score: 119 bits (298), Expect = 3.550e-27
Identity = 91/279 (32.62%), Postives = 124/279 (44.44%), Query Frame = 1
Query:    1 LPTFCLDPALFTSDIFGFPQMGRYRARLLLESAREVRENLRGRGSELHIIQRSPSEALPDLCQAMGANTIIFHAGATTEQRNEDAAVSDVLIRLGVEVLRLFDITLYEPSDLPWVIPQHPQNCFNRFRHAVRLKVP-RVPLDGLGDGKRLPPLPSPIPGGGGKLPSLHGLGYARDPLAATAAGTRAAPAVHALRGGEVTALLQLRAEL---------SRAAQSSYEAPNLSSLEPWLELGCLSPRTVYAEAAAFRSSC----PTVWHAVEFYLQMRDHF 795
            +P +C DP  F    FGF +MG +RA  L ES  ++R+ LR R S+L I Q  P + +P L Q +    + +H   T E+   +A +   L  +GV V   +  TLY P DLPW + Q P+  F  FR  V   +P R  L        LPPLP       G+ P+L  LG A   L +          +    GGE  AL +++  +                    + S   PWL LGCLSPR VYAE   + +       T W   E  L  RD+F
Sbjct:   31 IPLYCFDPRQFGQTTFGFAKMGAFRAEFLRESVADLRQMLRSRRSDLLIRQGLPEDIIPALVQDLQLTGVYWHQEITAEEVAVEAKLQRRLQEMGVTVQTFWGHTLYHPDDLPWSLTQLPE-VFTHFRKQVEGNIPIRAALP---TPSALPPLPEVT---AGECPTLADLGVAPPRLDSRT--------MLKFTGGETAALERMQTYIWTCDRLRCYKETRNGLLAVDDSSKFSPWLALGCLSPRRVYAEVERYEAERVKNESTYWLVFE--LLWRDYF 292          
BLAST of mRNA_P-wetherbeei_contig2012.1.1 vs. uniprot
Match: Q10W56_TRIEI (Cryptochrome DASH n=1 Tax=Trichodesmium erythraeum (strain IMS101) TaxID=203124 RepID=Q10W56_TRIEI)

HSP 1 Score: 119 bits (297), Expect = 5.020e-27
Identity = 91/280 (32.50%), Postives = 131/280 (46.79%), Query Frame = 1
Query:    1 LPTFCLDPALFTSDIFGFPQMGRYRARLLLESAREVRENLRGRGSELHIIQRSPSEALPDLCQAMGANTIIFHAGATTEQRNEDAAVSDVLIRLGVEVLRLFDITLYEPSDLPWVIPQHPQNCFNRFRHAVRLKVPRVPLDGLGDGKRLPPLPSPIPGGGGKLPSLHGLGYARDPLAATAAGTRAAPAVHALRGGEVTALLQLR--------AELSRAAQSSYEAPNLSS-LEPWLELGCLSPRTVYAEAAAFR----SSCPTVWHAVEFYLQMRDHFVF 801
            +P +CLDP  F+   FGFP+ G +RA+ LLES  ++R NL+  GS L I Q  P   +P L Q + A ++ FH   T  +   +  V   L ++GV +   +  TLY P DLP+ I Q P+  F  FR  V       P   +   K+L  LP    G   +LP+L  L   + PL +          V   +GGE  A  +++         ++ +  ++     N SS   PWL LGCLSPR +Y E   +      +  T W   E  L  RD+F F
Sbjct:   33 IPIYCLDPRQFSQTDFGFPKTGVFRAKFLLESIADLRNNLQKLGSNLVIFQDKPEIVIPRLAQQLSAKSVFFHQEVTELEVKVERLVHQALKQIGVRLKSFWGHTLYHPDDLPFEIKQLPE-LFTTFRKDVEKNSSVNPTFSIP--KKLSSLPKIDVG---ELPTLSDLNLEKPPLNSQG--------VLEFKGGETAAKERVKNYFWQQDYLKVYKETRNGMLGANYSSKFSPWLALGCLSPRYIYEEVKEYEYQRVKNQSTYWLIFE--LIWRDYFRF 296          
BLAST of mRNA_P-wetherbeei_contig2012.1.1 vs. uniprot
Match: A0A256BM40_9CYAN (Cryptochrome DASH n=2 Tax=unclassified Pseudanabaena TaxID=2593292 RepID=A0A256BM40_9CYAN)

HSP 1 Score: 117 bits (294), Expect = 1.250e-26
Identity = 88/279 (31.54%), Postives = 133/279 (47.67%), Query Frame = 1
Query:    4 PTFCLDPALFTSDIFGFPQMGRYRARLLLESAREVRENLRGRGSELHIIQRSPSEALPDLCQAMGANTIIFHAGATTEQRNEDAAVSDVLIRLGVEVLRLFDITLYEPSDLPWVIPQHPQNCFNRFRHAVRLKVPRVPLDGLGDGKRLPPLPSPIPGGGGKLPSLHGLGYARDPLAATAAGTRAAPAVHALRGGEVTALLQL--------RAELSRAAQSSY-EAPNLSSLEPWLELGCLSPRTVYAEAAAFRS----SCPTVWHAVEFYLQMRDHFVF 801
            P +C D A F    FGF + G +RA+ L+ES   +RENLR   S L +   +P + LP+L Q +G N+I +HA  TTE++  +  +  +L    V     +  TL    DLP+ I   P+  F  FR  V  K+     +      RLP LP  +  G  ++P+L  LG  ++P+            V  ++GGE  +L +L        R ++ +  ++    A + S   PWL LGCLSPR +Y +   + S    +  T W   E  L  RD+F F
Sbjct:   38 PVYCFDDAHFDKTPFGFEKTGSFRAKFLIESVTNLRENLRSLNSNLIVRIGNPDQILPELAQQLGINSIYYHAEVTTEEKALENKLRSILKNQNVNFKSFWGSTLLHQHDLPFEIANLPE-LFTNFRKQVEAKL--TIREAFPAPDRLPALPESVDIG--EIPTLENLGL-KEPIPCDRP-------VLEIKGGETESLKRLKHYFWTSDRLQVYKQTRNGMLHADDSSKFSPWLALGCLSPRYIYEQVKKYESDRLANDSTYWLIFE--LLWRDYFRF 301          
BLAST of mRNA_P-wetherbeei_contig2012.1.1 vs. uniprot
Match: UPI001F157F55 (DASH family cryptochrome n=1 Tax=Synechococcus sp. Nb3U1 TaxID=1914529 RepID=UPI001F157F55)

HSP 1 Score: 115 bits (289), Expect = 5.800e-26
Identity = 95/282 (33.69%), Postives = 128/282 (45.39%), Query Frame = 1
Query:    1 LPTFCLDPALFTSDIFGFPQMGRYRARLLLESAREVRENLRGRGSELHIIQRSPSEALPDLCQAMGANTIIFHAGATTEQRNEDAAVSDVLIRLGVEVLRLFDITLYEPSDLPWVIPQHPQNCFNRFRHAVRLKVP-RVPLDGLGDGKRLPPLPSPIPGGGGKLPSLHGLGY---ARDPLAATAAGTRAAPAVHALRGGEVTALLQL--------RAELSRAAQSSYEAPNLSS-LEPWLELGCLSPRTVYAEAAAFRSSC----PTVWHAVEFYLQMRDHF 795
            +P +CLDP  F    FGFP+ G +R + LLES  ++R+ L+  GS+L I +  P + +P L +    + +  H    TE+     A+   L  LGV +   +  TLY P DLP+ I + P+  F RFR  V  +   R PL        LPPLP  +  G   LP L  LG    ARDP A                GG   A  +L        R    +  ++    PN  S L  WL LGC+SPRTVYAE + +         T W   E  L  RD+F
Sbjct:   30 IPVYCLDPRHFAQTSFGFPKTGAFRGQFLLESLADLRQALQTEGSDLVIRRGQPEQVIPALAKKWEVSAVYAHEEVGTEEETVTHALRLALESLGVPLYTFWGHTLYHPQDLPFPIAKVPE-LFTRFRKQVEAESSIRDPLP----IPNLPPLPQGLDPG--PLPPLAELGLSLPARDPRARLV-----------YTGGSAAAQARLHSYFWEQDRLRFYKETRNGMLDPNDGSRLSAWLALGCISPRTVYAEVSRYEQERVRNESTYWLVFE--LLWRDYF 291          
BLAST of mRNA_P-wetherbeei_contig2012.1.1 vs. uniprot
Match: H1WMC3_9CYAN (Cryptochrome DASH n=5 Tax=Oscillatoriales TaxID=1150 RepID=H1WMC3_9CYAN)

HSP 1 Score: 115 bits (289), Expect = 5.840e-26
Identity = 89/280 (31.79%), Postives = 126/280 (45.00%), Query Frame = 1
Query:    1 LPTFCLDPALFTSDIFGFPQMGRYRARLLLESAREVRENLRGRGSELHIIQRSPSEALPDLCQAMGANTIIFHAGATTEQRNEDAAVSDVLIRLGVEVLRLFDITLYEPSDLPWVIPQHPQNCFNRFRHAVRLKVPRVPLDGLGDGKRLPPLPSPIPGGGGKLPSLHGLGYARDPLAATAAGTRAAPAVHALRGGEVTALLQLRAEL-SRAAQSSYEAPN--------LSSLEPWLELGCLSPRTVYAEAAAFRS----SCPTVWHAVEFYLQMRDHFVF 801
            +P +C DP  F    FGFP+MG +R + LLES  ++R NL+  GS L +    P   + DL + +  + + +H   TTE+   + A+   L  LGVEV   +  TLY P +LP+ I + P+  F  FR  V  K    P       K+LP  P   PG   ++P+L  LG  + P  + A        V    GGE   L +L      R    +Y+            S   PWL  GCLSPR +Y +   +      +  T W   E  L  RD+F F
Sbjct:   35 IPLYCFDPRQFAKTSFGFPKMGGFRGKFLLESVADLRHNLQKIGSNLLVRIGEPETVIFDLVKQLNIDAVYYHKEVTTEELAVERALEKALTPLGVEVKSFWGATLYHPKELPFPIEKLPE-LFTNFRKQVEKKSIIYPP--YTPPKQLPTFPDIEPG---EIPTLAELGITKLPFDSRA--------VLDFVGGETAGLTRLNDYFWQRDCLKNYKQTRNGMLGSDYSSKFSPWLANGCLSPRWIYQQVCDYEQQRVKNDSTYWLVFE--LLWRDYFRF 298          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2012.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Q2JXG1_SYNJA2.010e-3035.69Cryptochrome DASH n=5 Tax=unclassified Synechococc... [more]
Q2JN91_SYNJB9.540e-2936.82Cryptochrome DASH n=2 Tax=unclassified Synechococc... [more]
A0A8K1MT28_9CYAN2.390e-2834.63DASH family cryptochrome n=2 Tax=Oscillatoriales T... [more]
B4VS67_9CYAN3.530e-2832.86Cryptochrome DASH n=1 Tax=Coleofasciculus chthonop... [more]
A0A7T5E1P2_9CYAN6.650e-2832.14Cryptochrome DASH n=1 Tax=Leptolyngbya sp. BL0902 ... [more]
A0A8K2A7Z2_9CYAN3.550e-2732.62DASH family cryptochrome n=1 Tax=Petrachloros mira... [more]
Q10W56_TRIEI5.020e-2732.50Cryptochrome DASH n=1 Tax=Trichodesmium erythraeum... [more]
A0A256BM40_9CYAN1.250e-2631.54Cryptochrome DASH n=2 Tax=unclassified Pseudanabae... [more]
UPI001F157F555.800e-2633.69DASH family cryptochrome n=1 Tax=Synechococcus sp.... [more]
H1WMC3_9CYAN5.840e-2631.79Cryptochrome DASH n=5 Tax=Oscillatoriales TaxID=11... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2012contigP-wetherbeei_contig2012:4..927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog130081.XP_005706429.1
Preferred namePHR2
PFAMsDNA_photolyase,FAD_binding_7
Model size801
Max annot lvl2759|Eukaryota
KEGG koko:K01669
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.41e-32
EggNOG OGsCOG0415@1|root,KOG0133@2759|Eukaryota
EC4.1.99.3
DescriptionDNA photolyase activity
Cds size801
COG categoryL
BRITEko00000,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186191.5070994-CDS-P-wetherbeei_contig2012:3..5371683186191.5070994-CDS-P-wetherbeei_contig2012:3..537Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2012 4..537 +
1683186191.5216177-CDS-P-wetherbeei_contig2012:660..9271683186191.5216177-CDS-P-wetherbeei_contig2012:660..927Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2012 661..927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2012.1.1prot_P-wetherbeei_contig2012.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2012 4..927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2012.1.1

>prot_P-wetherbeei_contig2012.1.1 ID=prot_P-wetherbeei_contig2012.1.1|Name=mRNA_P-wetherbeei_contig2012.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=267bp
LPTFCLDPALFTSDIFGFPQMGRYRARLLLESAREVRENLRGRGSELHII
QRSPSEALPDLCQAMGANTIIFHAGATTEQRNEDAAVSDVLIRLGVEVLR
LFDITLYEPSDLPWVIPQHPQNCFNRFRHAVRLKVPRVPLDGLGDGKRLP
PLPSPIPGGGGKLPSLHGLGYARDPLAATAAGTRAAPAVHALRGGEVTAL
LQLRAELSRAAQSSYEAPNLSSLEPWLELGCLSPRTVYAEAAAFRSSCPT
VWHAVEFYLQMRDHFVF
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mRNA from alignment at P-wetherbeei_contig2012:4..927+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2012.1.1 ID=mRNA_P-wetherbeei_contig2012.1.1|Name=mRNA_P-wetherbeei_contig2012.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=924bp|location=Sequence derived from alignment at P-wetherbeei_contig2012:4..927+ (Phaeothamnion wetherbeei SAG_119_79)
CTTCCCACATTTTGCCTCGATCCGGCGCTCTTTACAAGTGATATCTTCGG CTTCCCTCAGATGGGGCGATATCGGGCGAGGCTTCTGCTCGAGAGTGCCC GAGAAGTAAGGGAAAATTTGCGGGGCAGGGGCTCAGAGCTTCACATCATA CAGCGCAGTCCAAGTGAAGCGCTGCCAGACTTATGCCAGGCGATGGGTGC CAACACGATTATATTCCATGCCGGGGCGACGACTGAGCAGAGAAACGAAG ATGCGGCTGTATCCGACGTACTGATTCGCCTCGGCGTGGAAGTATTGCGG CTGTTTGATATCACGCTCTACGAGCCGTCGGACCTCCCGTGGGTAATTCC GCAACATCCTCAAAACTGCTTCAACCGCTTTCGTCATGCGGTGCGCTTAA AAGTCCCACGCGTGCCGCTTGACGGACTCGGCGACGGCAAGCGGCTGCCG CCGCTGCCGTCGCCAATTCCAGGGGGTGGCGGGAAGTTGCCATCACTGCA CGGCCTCGGCTACGCGCGAGACCCGCTCGCGGCAGTGGTTGGCCCCGCCC GGCCGCCGCCATCGCCTGCCGCCGTCGCCGGCATGGCAACGGCGCGGGCC GTGGTCGTCGCGCGCACTGCGACCACTGGGGCTGACCTGATGGCGCCTCC GGTACAGACCGCTGCCGGCACCCGCGCCGCCCCGGCCGTGCACGCCCTGC GCGGCGGCGAAGTGACGGCGCTGCTTCAGCTGCGCGCGGAGCTGTCGCGG GCAGCGCAATCCAGCTACGAGGCGCCAAATCTGTCGAGCTTGGAACCGTG GCTGGAGCTCGGATGCCTGAGCCCTCGGACGGTCTATGCTGAAGCCGCGG CCTTTCGGTCATCGTGCCCCACCGTCTGGCACGCGGTCGAGTTTTACTTG CAGATGAGGGACCACTTCGTCTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2012:4..927+

>mRNA_P-wetherbeei_contig2012.1.1 ID=mRNA_P-wetherbeei_contig2012.1.1|Name=mRNA_P-wetherbeei_contig2012.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=801bp|location=Sequence derived from alignment at P-wetherbeei_contig2012:4..927+ (Phaeothamnion wetherbeei SAG_119_79)
CTTCCCACATTTTGCCTCGATCCGGCGCTCTTTACAAGTGATATCTTCGG
CTTCCCTCAGATGGGGCGATATCGGGCGAGGCTTCTGCTCGAGAGTGCCC
GAGAAGTAAGGGAAAATTTGCGGGGCAGGGGCTCAGAGCTTCACATCATA
CAGCGCAGTCCAAGTGAAGCGCTGCCAGACTTATGCCAGGCGATGGGTGC
CAACACGATTATATTCCATGCCGGGGCGACGACTGAGCAGAGAAACGAAG
ATGCGGCTGTATCCGACGTACTGATTCGCCTCGGCGTGGAAGTATTGCGG
CTGTTTGATATCACGCTCTACGAGCCGTCGGACCTCCCGTGGGTAATTCC
GCAACATCCTCAAAACTGCTTCAACCGCTTTCGTCATGCGGTGCGCTTAA
AAGTCCCACGCGTGCCGCTTGACGGACTCGGCGACGGCAAGCGGCTGCCG
CCGCTGCCGTCGCCAATTCCAGGGGGTGGCGGGAAGTTGCCATCACTGCA
CGGCCTCGGCTACGCGCGAGACCCGCTCGCGGCAACCGCTGCCGGCACCC
GCGCCGCCCCGGCCGTGCACGCCCTGCGCGGCGGCGAAGTGACGGCGCTG
CTTCAGCTGCGCGCGGAGCTGTCGCGGGCAGCGCAATCCAGCTACGAGGC
GCCAAATCTGTCGAGCTTGGAACCGTGGCTGGAGCTCGGATGCCTGAGCC
CTCGGACGGTCTATGCTGAAGCCGCGGCCTTTCGGTCATCGTGCCCCACC
GTCTGGCACGCGGTCGAGTTTTACTTGCAGATGAGGGACCACTTCGTCTT
C
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