mRNA_P-wetherbeei_contig2011.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig2011.1.1 vs. uniprot
Match: D8LMY2_ECTSI (CSN8_PSD8_EIF3K domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMY2_ECTSI) HSP 1 Score: 104 bits (259), Expect = 5.990e-23 Identity = 61/169 (36.09%), Postives = 93/169 (55.03%), Query Frame = 1
Query: 1 VDSFVAAGDFRGALHACEDLELHIDGELPL-HRSEEARNAALNLRCLAIQMALYILFDELESARHFWKRLPAPAKGGTSEVPYLWNSARCFLLRNVPGAYASL-ERQWSPQLEPMVEIVVRRLRQRHLALMAKVYTALPLVQAAGMLGMDAATARVAVLEQGWAVDDLA 501
+++ VA DFR A+ CE+LE+ + P + ++A N + +AL + D++ +ARH W+RLPA AK E LW + R++ A A+L +R+WS L P V ++ R+R+R LA++ K +T LPL AGML A A L++GW VD A
Sbjct: 15 IEALVAKKDFRAAVVKCEELEI-LTASTPFGQQHQDAAN---------VHLALLLALDDVNNARHLWRRLPAAAKAAGGETAALWEVGKSLWKRDMSFAQAALRDREWSAPLAPYVALIETRVRERQLAIIPKAFTVLPLESVAGMLACSVEDAEKACLKEGWEVDATA 173
BLAST of mRNA_P-wetherbeei_contig2011.1.1 vs. uniprot
Match: A0A7S2FNN9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FNN9_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 3.290e-17 Identity = 52/164 (31.71%), Postives = 82/164 (50.00%), Query Frame = 1
Query: 1 VDSFVAAGDFRGALHACEDLELHIDGELPLHRSEEARNAALNLRCLAIQMALYILFDELESARHFWKRLPAPAKGGTSEVPYLWNSARCFLLRNVPGAYASLERQWSPQLEPMVEIVVRRLRQRHLALMAKVYTALPLVQAAGMLGMDAATARVAVLEQGWAVD 492
V S V +G++ A CE+LEL P + AR A + +Y++ ++L++ARH W+R+ K G SE+ W + R + AYA+L+R WS +L P+ ++ +R+ AL+ K YT + + AA LGMD A A + W D
Sbjct: 5 VTSSVISGNYAAAARLCEELELETCST-PNTDAAPARYAR--------HIMVYMILNDLDNARHLWRRIDEGIKAGGSELEATWEVGKLLWKREISAAYAALQRTWSAELAPLATALLEAVREHEFALLGKAYTNVGVSTAAAALGMDEAGALAFCTARNWTAD 159
BLAST of mRNA_P-wetherbeei_contig2011.1.1 vs. uniprot
Match: A0A6V1NPF3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NPF3_HETAK) HSP 1 Score: 85.5 bits (210), Expect = 3.710e-16 Identity = 57/159 (35.85%), Postives = 81/159 (50.94%), Query Frame = 1
Query: 22 GDFRGALHACEDLELHIDGELPLHRSEEARNAALNLRCLAIQMALYILFDELESARHFWKRLPAPAKGGTSEVPYLWNSARCFLLRNVPGAYASLERQWSPQLEPMVEIVVRRLRQRHLALMAKVYTALPLVQAAGMLGM--DAATARVAVLEQGWAVD 492
G++ L A E+LEL +D E E+ + L +QMALY++ D+L++ARH W+ PA AK + LW + PGAYA L + W +V + R+R+R LA A+ Y LPL A + G+ D A A A L +GWA D
Sbjct: 18 GNYAQCLIALEELEL-LDAEKEGDFPEDY------IGRLQLQMALYLMEDDLDNARHLWRGAPAVAKDENGPLAKLWAVVAALWRGDAPGAYAKLNQPWDDSTARLVPAITERVRERALAQAARAYRRLPLAVVAPLAGLADDPAAALRACLARGWARD 169
BLAST of mRNA_P-wetherbeei_contig2011.1.1 vs. uniprot
Match: A0A7S2GZT5_9STRA (COP9 signalosome complex subunit 8 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GZT5_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 1.300e-12 Identity = 45/161 (27.95%), Postives = 77/161 (47.83%), Query Frame = 1
Query: 13 VAAGDFRGALHACEDLELHIDGELPLHRSEEARNAALNLRCLAIQMALYILFDELESARHFWKRLPAPAKGGTSEVPYLWNSARCFLLRN-VPGAYASLERQWSPQLEPMVEIVVRRLRQRHLALMAKVYTALPLVQAAGMLGMDAATARVAVLEQGWAVD 492
+A DF AL CE+LE G AR Q+ LY++ +++++ARH W+R+ KG SE+ +W+ A RN +P + SL + WSP++ P+++ + +R R L++K Y + L L + +++GW D
Sbjct: 19 IAERDFATALRNCEELEFETIGAQATDAQAHARYCR--------QLTLYLITNDMDNARHLWRRIGNDFKGVESELSAIWSIASNLWHRNNIPMVFKSLRQTWSPEIAPLMQKFIETIRDRQFELLSKAYMKVTLAATITELSLPEDEVVEYCVKRGWKFD 171
BLAST of mRNA_P-wetherbeei_contig2011.1.1 vs. uniprot
Match: K4GG99_CALMI (COP9 signalosome complex subunit 8 n=10 Tax=Chondrichthyes TaxID=7777 RepID=K4GG99_CALMI) HSP 1 Score: 74.3 bits (181), Expect = 3.990e-12 Identity = 39/116 (33.62%), Postives = 66/116 (56.90%), Query Frame = 1
Query: 148 MALYILFDELESARHFWKRLPAPAKGGTSEVPYLWNSARCFLLRNVPGAYASLE-RQWSPQLEPMVEIVVRRLRQRHLALMAKVYTALPLVQAAGMLGMDAATARVAVLEQGWAVD 492
+ALY+L +++ +AR+ WKR+P K E+ +W+ + R+ PG Y+ + QWS ++P++E + R+R L+A+ YT++ A +G+ A AVLEQGW D
Sbjct: 41 LALYLLHNDMNTARYLWKRIPQALKTANPELGGIWSVGQRIWQRDFPGIYSVISSHQWSETIQPIMESLRDATRRRAFGLVAQAYTSISADDLAAFVGLVVDEAVKAVLEQGWQAD 156
BLAST of mRNA_P-wetherbeei_contig2011.1.1 vs. uniprot
Match: A0A8B8CXF6_CRAVI (COP9 signalosome complex subunit 8 n=2 Tax=Crassostrea TaxID=6564 RepID=A0A8B8CXF6_CRAVI) HSP 1 Score: 70.5 bits (171), Expect = 9.580e-11 Identity = 34/115 (29.57%), Postives = 63/115 (54.78%), Query Frame = 1
Query: 148 MALYILFDELESARHFWKRLPAPAKGGTSEVPYLWNSARCFLLRNVPGAYASLERQWSPQLEPMVEIVVRRLRQRHLALMAKVYTALPLVQAAGMLGMDAATARVAVLEQGWAVD 492
+ALY+L +++ +A+ WKR+P K + E +W + LR+ PG Y +L+++WS ++E + R+R L++K Y+++ A +GM A A +++GW D
Sbjct: 43 LALYLLHNDMCNAKFLWKRIPQTVKSASPETLQIWAVGQKLWLRDYPGIYEALKKEWSENTTQIMEALKAATRERAKTLVSKAYSSIDAEDFAVFMGMPLTEAIQAAIQEGWTYD 157
BLAST of mRNA_P-wetherbeei_contig2011.1.1 vs. uniprot
Match: A0A2T7Q059_POMCA (CSN8_PSD8_EIF3K domain-containing protein n=2 Tax=Pomacea canaliculata TaxID=400727 RepID=A0A2T7Q059_POMCA) HSP 1 Score: 64.7 bits (156), Expect = 9.400e-9 Identity = 31/115 (26.96%), Postives = 67/115 (58.26%), Query Frame = 1
Query: 148 MALYILFDELESARHFWKRLPAPAKGGTSEVPYLWNSARCFLLRNVPGAYASLERQWSPQLEPMVEIVVRRLRQRHLALMAKVYTALPLVQAAGMLGMDAATARVAVLEQGWAVD 492
+ALY+L ++L +A+ WKR+P K E+ +W + LR++PG Y +L+++WS ++P++ + + ++ L+ Y+++ + + +G+ + A+ A L+ GW +D
Sbjct: 37 LALYLLQNDLCNAKFLWKRIPQNIKTANPELSTIWVVGQRMWLRDLPGVYEALKKEWSEAVKPIMMALRDSVHKKAFNLVRLGYSSISVEDFSLFVGLSTSDAKQAALQDGWMLD 151
BLAST of mRNA_P-wetherbeei_contig2011.1.1 vs. uniprot
Match: A0A8B7NWQ1_HYAAZ (COP9 signalosome complex subunit 8-like n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7NWQ1_HYAAZ) HSP 1 Score: 64.7 bits (156), Expect = 9.730e-9 Identity = 35/116 (30.17%), Postives = 59/116 (50.86%), Query Frame = 1
Query: 148 MALYILFDELESARHFWKRLPAPAKGGTSEVPYLWNSARCFLLRNVPGAYASLER-QWSPQLEPMVEIVVRRLRQRHLALMAKVYTALPLVQAAGMLGMDAATARVAVLEQGWAVD 492
+A+Y+L +++ SA+ WKR+PA K E+ LW R R+ + L QW P + P++ ++ R+R L L+A YT++ L + +LG + A GW +D
Sbjct: 36 LAIYLLQNDVMSAKFLWKRIPASVKQRCPELERLWGVGRVLFTRDRAAVFVVLNSTQWGPNVAPIMAALIESYRERTLELIASAYTSIGLDDVSKLLGQEREAALQKTQALGWDLD 151
BLAST of mRNA_P-wetherbeei_contig2011.1.1 vs. uniprot
Match: A0A3R7J8J7_9STRA (COP9 signalosome complex subunit 8 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J8J7_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 1.740e-8 Identity = 33/110 (30.00%), Postives = 58/110 (52.73%), Query Frame = 1
Query: 115 AALNLRCLAIQMALYILFDELESARHFWKRLPAPAKGGTSEVPYLWNSARCFLLRNVPGAYASLERQWSPQLEPMVEIVVRRLRQRHLALMAKVYTALPLVQAAGMLGMD 444
AAL A + + +L L AR WKR+ AK + E+ +W + RN+ GAYA+++R+WSP L+ ++E + R+ L+++ Y+ + + A LG +
Sbjct: 56 AALTSDFYASYLLIVLLSQNLNDARFLWKRISPEAKHNSEELQAVWGIGKALWDRNLAGAYAAMDREWSPSLQELIEALRTSTRESTAELLSRAYSTISVNDVALALGFN 165
BLAST of mRNA_P-wetherbeei_contig2011.1.1 vs. uniprot
Match: A0A6G1SM03_9ACAR (COP9 signalosome complex subunit 8 n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SM03_9ACAR) HSP 1 Score: 61.2 bits (147), Expect = 2.270e-7 Identity = 28/101 (27.72%), Postives = 60/101 (59.41%), Query Frame = 1
Query: 148 MALYILFDELESARHFWKRLPAPAKGGTSEVPYLWNSARCFLLRNVPGAYASLER--QWSPQLEPMVEIVVRRLRQRHLALMAKVYTALPLVQAAGMLGMD 444
+A+Y+LF++L SA+ WKR+P K +E+ +W+ + +N Y +++ W L+ +++++ RQR + L++K Y+++ L A+ +LG++
Sbjct: 36 LAIYLLFNDLTSAKFLWKRIPDDVKAANNELSVIWSVGKLMWKKNYSEIYGTIDSIPVWPNHLKNIMKLISESTRQRVIELISKAYSSISLNDASQLLGLN 136 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2011.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 13
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig2011.1.1 >prot_P-wetherbeei_contig2011.1.1 ID=prot_P-wetherbeei_contig2011.1.1|Name=mRNA_P-wetherbeei_contig2011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=200bp MALYILFDELESARHFWKRLPAPAKGGTSEVPYLWNSARCFLLRNVPGAYback to top mRNA from alignment at P-wetherbeei_contig2011:4675..6129- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig2011.1.1 ID=mRNA_P-wetherbeei_contig2011.1.1|Name=mRNA_P-wetherbeei_contig2011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1455bp|location=Sequence derived from alignment at P-wetherbeei_contig2011:4675..6129- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig2011:4675..6129- >mRNA_P-wetherbeei_contig2011.1.1 ID=mRNA_P-wetherbeei_contig2011.1.1|Name=mRNA_P-wetherbeei_contig2011.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=600bp|location=Sequence derived from alignment at P-wetherbeei_contig2011:4675..6129- (Phaeothamnion wetherbeei SAG_119_79)back to top |