mRNA_P-wetherbeei_contig2009.1.4 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2009.1.4
Unique NamemRNA_P-wetherbeei_contig2009.1.4
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2009.1.4 vs. uniprot
Match: W7TS73_9STRA (SMI1_KNR4 domain-containing protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TS73_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 5.780e-8
Identity = 47/150 (31.33%), Postives = 73/150 (48.67%), Query Frame = 2 
Query:  131 GSAPSEHSASAHSALRTVFKTADTAAFVLAFCDPEAWLAFEAVSREHYTAINSSHCWAQNDLGVL------EAAVGAHEKQERKQRYVGYRRAEKRVGEAWERLCRFAPAHRLWTLNPGASHEAITAKEASLKRRFPPEVRASFVIHNGQ 562
            G+A    SA   +A+RT F    T    L+F  P +WL  E   +  ++ I  ++ W   DLG +           A   Q  +  ++  + +  R+  AW  + +FAPA   WTLN G   +A+   E +L    PP++RASF+IH+GQ
Sbjct:   49 GTAQLSFSAFLSAAVRTTFWLDIT----LSFLPPSSWLILECACKLIFSHIKHANAWRCVDLGPIYLHSLPSCLTPADIVQNIRFEFIERKASLWRLRRAWATIEQFAPAGFSWTLNKGIEEDALGRWEYALGCSLPPDLRASFLIHDGQ 194
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2009.1.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
W7TS73_9STRA5.780e-831.33SMI1_KNR4 domain-containing protein n=1 Tax=Nannoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2009contigP-wetherbeei_contig2009:260..2513 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1447
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_002100.1
Cds size1092
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2009.1.4prot_P-wetherbeei_contig2009.1.4Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2009 850..2461 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186190.3830843-UTR-P-wetherbeei_contig2009:259..3811683186190.3830843-UTR-P-wetherbeei_contig2009:259..381Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2009 260..381 -
1683186190.3928335-UTR-P-wetherbeei_contig2009:668..8491683186190.3928335-UTR-P-wetherbeei_contig2009:668..849Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2009 669..849 -
1683186190.449806-UTR-P-wetherbeei_contig2009:2461..25131683186190.449806-UTR-P-wetherbeei_contig2009:2461..2513Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2009 2462..2513 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186190.402023-CDS-P-wetherbeei_contig2009:849..9491683186190.402023-CDS-P-wetherbeei_contig2009:849..949Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2009 850..949 -
1683186190.4193134-CDS-P-wetherbeei_contig2009:1365..19911683186190.4193134-CDS-P-wetherbeei_contig2009:1365..1991Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2009 1366..1991 -
1683186190.4325361-CDS-P-wetherbeei_contig2009:2095..24611683186190.4325361-CDS-P-wetherbeei_contig2009:2095..2461Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2009 2096..2461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2009.1.4

>prot_P-wetherbeei_contig2009.1.4 ID=prot_P-wetherbeei_contig2009.1.4|Name=mRNA_P-wetherbeei_contig2009.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=364bp
MKILVRTPEGQRQWLESRMSVLRLHEGSAPSEHSASAHSALRTVFKTADT
AAFVLAFCDPEAWLAFEAVSREHYTAINSSHCWAQNDLGVLEAAVGAHEK
QERKQRYVGYRRAEKRVGEAWERLCRFAPAHRLWTLNPGASHEAITAKEA
SLKRRFPPEVRASFVIHNGQWCNDSFSDVGWLSFLKLAHNKARVICLKDL
KNTHVFSAFDIATGWPLVSAVLSLRPFLAAARKPLQSPLPRQSQQGVLQG
HRLLPVEEVVASEDIDGSAAAAAVTAAGTEMKRAAAPSAAAAMEATVGMV
PAAVAVAAAAAAGGSPDRRSLMRLSGWKGNRFIGCDDTGAVFVCMPLFSR
KVAASFAEYLKLR*
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mRNA from alignment at P-wetherbeei_contig2009:260..2513-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2009.1.4 ID=mRNA_P-wetherbeei_contig2009.1.4|Name=mRNA_P-wetherbeei_contig2009.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2254bp|location=Sequence derived from alignment at P-wetherbeei_contig2009:260..2513- (Phaeothamnion wetherbeei SAG_119_79)
AGTAGAGGGAGCGCTTGTTCGGTGCGTTGCCGTATAAAAGCACTGCTCTC
ACATGAAAATACTCGTCAGAACGCCCGAAGGTCAACGCCAGTGGCTCGAG
AGTAGGATGTCTGTCCTTCGCTTGCACGAAGGGAGCGCTCCGTCCGAGCA
CAGCGCATCCGCGCACAGCGCACTGCGGACTGTGTTTAAGACTGCCGACA
CGGCCGCCTTTGTCTTGGCCTTCTGTGACCCGGAGGCGTGGCTCGCATTC
GAGGCAGTGTCGAGAGAGCACTACACTGCAATTAACTCGTCGCATTGTTG
GGCGCAAAACGATCTTGGTGTCTTGGAAGCCGCGGTTGGTGCTCACGAGA
AGCAAGAGAGAAAGCAGCGGTATGTCGGGTATCGACGGGCGGAAAAGAGA
GTCGGCGAAGCGTGGGAGGTAAGGGGTTATCCTCCTTTTTCCTTTTTTCC
TTTCCGCTCCCACGGATTTCTTGCCCATTGTATCCACCTACCTCCTCGCC
CCTTTTCCTCCTCTCGCGCCAGCGGCTGTGTCGCTTTGCGCCGGCACACC
GGCTTTGGACACTGAATCCGGGCGCGTCGCATGAAGCCATCACCGCCAAG
GAGGCGTCGTTAAAGAGACGCTTCCCTCCGGAAGTCAGGGCTTCTTTTGT
CATCCACAATGGACAGTGGTGCAACGACAGCTTCAGCGACGTGGGTTGGC
TTTCTTTTTTAAAATTGGCTCACAACAAAGCACGCGTAATTTGTCTAAAA
GATTTGAAAAATACGCATGTGTTTTCGGCATTTGACATTGCGACGGGTTG
GCCGTTGGTTAGCGCCGTCCTCTCTCTCCGTCCGTTTTTAGCAGCAGCGA
GAAAGCCGCTTCAATCCCCCCTTCCCCGGCAATCACAACAGGGCGTTTTG
CAAGGCCACCGTCTGCTGCCGGTGGAGGAGGTGGTGGCCAGTGAGGATAT
CGACGGTTCGGCGGCAGCGGCGGCGGTGACGGCGGCGGGAACGGAGATGA
AGCGGGCGGCGGCGCCGTCGGCGGCAGCAGCAATGGAAGCCACTGTGGGG
ATGGTGCCTGCGGCGGTGGCGGTGGCGGCGGCGGCAGCGGCGGGAGGTTC
GCCTGACCGCCGCAGTCTTATGCGTCTGTCTGGCTGGAAAGGCAACAGGT
GCGTGAAGGGCAGAACCGGGATGCGAAATTGGTTGGTGTTTCGGATAGTT
GAGGCAATTCTTGCGGCACCGCCGCCAACCGAGCAAAGTTTACTCTCTGT
CGGATTGTGGTTACATGTCGCAAGCGGTAAATTCCGTCCTCGCAAAACTT
TCATGAAACTTGGTAAATGGATTGAGAGGGGACGGGACGCCTCTGTCGAA
ATTGTCGAATATTTTCTCGCCGGGAGGCGACGACAAGTTGCCTCTTTTAT
GTTCGCTTGTTTTGATCCGTTCACCGATGAAGAGATTACCCTTTGCTGTT
GTTTACTTGTCCCTTTCTATTCGTCTTTGAACAGTTTAAAATTTCGATCG
CCCCCAACCCGCTACCCCACCTCTGCTGCAACCCGCACCCCGCCGCCGTC
GCCGCCTTTACTAGGTTCATTGGCTGCGACGACACTGGCGCCGTCTTCGT
CTGCATGCCACTCTTCTCTCGCAAAGTGGCCGCCAGCTTTGCTGAGTACC
TGAAGCTGCGGTAAACGACCGGCAGCGGAACGTCGGACGTAAGCAAGAAG
AGCAGCCGGCCGCGCAAGGATCCTCTGCGGCCCGCCGCTCTGCGGCGGGC
GTGGCCCCGCACGCCTTGTCGTCCGAGGCGGCGTCGTGACCGCGAGCAAT
CTGTCGGCTTGCGTTTTGGATCGACCGTTCTACTGTCTAGTGAAGGTGAG
GGCCTCGTTGCTTAGGCAGCACCTGCGGGGAGATCGGTCGCGGGCTGTAA
AAGTTGAAGCGCTGTTTTTGCAACAAGGAACCGCAATTGGTGGTGGCGGC
GGCCAAGATTGAAGCGGATCGCGCTGGCATTGCCACGAACAGGTCTTCGA
AGAGAGCGGTTCCGGAGAATGGCGCGACGCAAACTTCAAGGGAAAGCCTG
CTGCGGGGCTGCTGCCAAGCTTTCGTCCTTAGATCTCTCATTCTGACTCG
GCGATTCCCCTTCCCCTCTTCCGCTTCCGCAGTCCGCAGTGGGCCCGTGG
TGGAGACGCGGCTGGCGGCCTTCAAGGCGGGAAGGGCATGTGTAAGGCGA
AGTAGTGGGTGCGGCCACCTGACCCAGAGAAGGAAAAGGGAAAGAGGGTT
TTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2009:260..2513-

>mRNA_P-wetherbeei_contig2009.1.4 ID=mRNA_P-wetherbeei_contig2009.1.4|Name=mRNA_P-wetherbeei_contig2009.1.4|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1092bp|location=Sequence derived from alignment at P-wetherbeei_contig2009:260..2513- (Phaeothamnion wetherbeei SAG_119_79)
ATGAAAATACTCGTCAGAACGCCCGAAGGTCAACGCCAGTGGCTCGAGAG
TAGGATGTCTGTCCTTCGCTTGCACGAAGGGAGCGCTCCGTCCGAGCACA
GCGCATCCGCGCACAGCGCACTGCGGACTGTGTTTAAGACTGCCGACACG
GCCGCCTTTGTCTTGGCCTTCTGTGACCCGGAGGCGTGGCTCGCATTCGA
GGCAGTGTCGAGAGAGCACTACACTGCAATTAACTCGTCGCATTGTTGGG
CGCAAAACGATCTTGGTGTCTTGGAAGCCGCGGTTGGTGCTCACGAGAAG
CAAGAGAGAAAGCAGCGGTATGTCGGGTATCGACGGGCGGAAAAGAGAGT
CGGCGAAGCGTGGGAGCGGCTGTGTCGCTTTGCGCCGGCACACCGGCTTT
GGACACTGAATCCGGGCGCGTCGCATGAAGCCATCACCGCCAAGGAGGCG
TCGTTAAAGAGACGCTTCCCTCCGGAAGTCAGGGCTTCTTTTGTCATCCA
CAATGGACAGTGGTGCAACGACAGCTTCAGCGACGTGGGTTGGCTTTCTT
TTTTAAAATTGGCTCACAACAAAGCACGCGTAATTTGTCTAAAAGATTTG
AAAAATACGCATGTGTTTTCGGCATTTGACATTGCGACGGGTTGGCCGTT
GGTTAGCGCCGTCCTCTCTCTCCGTCCGTTTTTAGCAGCAGCGAGAAAGC
CGCTTCAATCCCCCCTTCCCCGGCAATCACAACAGGGCGTTTTGCAAGGC
CACCGTCTGCTGCCGGTGGAGGAGGTGGTGGCCAGTGAGGATATCGACGG
TTCGGCGGCAGCGGCGGCGGTGACGGCGGCGGGAACGGAGATGAAGCGGG
CGGCGGCGCCGTCGGCGGCAGCAGCAATGGAAGCCACTGTGGGGATGGTG
CCTGCGGCGGTGGCGGTGGCGGCGGCGGCAGCGGCGGGAGGTTCGCCTGA
CCGCCGCAGTCTTATGCGTCTGTCTGGCTGGAAAGGCAACAGGTTCATTG
GCTGCGACGACACTGGCGCCGTCTTCGTCTGCATGCCACTCTTCTCTCGC
AAAGTGGCCGCCAGCTTTGCTGAGTACCTGAAGCTGCGGTAA
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