mRNA_P-wetherbeei_contig2005.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig2005.4.1
Unique NamemRNA_P-wetherbeei_contig2005.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig2005.4.1 vs. uniprot
Match: A0A835YNH4_9STRA (RING-CH-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNH4_9STRA)

HSP 1 Score: 298 bits (763), Expect = 1.080e-87
Identity = 157/225 (69.78%), Postives = 175/225 (77.78%), Query Frame = 1 
Query:  178 MEFEGSGLDKRSLSGLVRSVSGNFDRLISTSEGEVPKRRFSKDADSEE---VLECRVCRGEPEPGRRLFAPCLCSGSIMYTHEDCLLQWLQHSGKAVCELCGHCFSFTPIYAPDAPETLALWQVLLTCLRKALLEWLPFVLRVLLAAALWLVVVPLATSWLYRIWIHRTRVLLPHLLYQRLTPACAWSDCVSGLIIAAAIILSFLSLMTFADFLADQIL-REDWE 840
            MEF+GS L      G+VRSVSG   RL ST E  + + R + + D EE   VLECRVCRGEPE GRRL+APCLCSGSIMY HEDCL QWL HS K  CELCGH F+FTP+YAPDAP  L  WQV  +CLR+AL  WLP  LR  LAAALWLVVVPLATSWLYR+WIHR+R+LLP  L QR+T ACAW DCVSG IIAAAIILSFLSLMTFADF+ADQIL RE+W+
Sbjct:    1 MEFDGSNL------GMVRSVSGKLLRLPSTDELRLSRVRGASEPDEEEEPEVLECRVCRGEPELGRRLYAPCLCSGSIMYIHEDCLQQWLAHSKKDSCELCGHTFAFTPVYAPDAPALLPAWQVAASCLRRALTLWLPRALRAALAAALWLVVVPLATSWLYRVWIHRSRMLLPAQLMQRMTLACAWGDCVSGAIIAAAIILSFLSLMTFADFIADQILLREEWD 219
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BLAST of mRNA_P-wetherbeei_contig2005.4.1 vs. uniprot
Match: A0A6H5JWM1_9PHAE (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWM1_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 1.970e-82
Identity = 147/240 (61.25%), Postives = 176/240 (73.33%), Query Frame = 1 
Query:  178 MEFEGSGLDKRSLSGLVRSVSGNFDRLISTSEGEVPKRR---------------FSKDA-----DSEEVLECRVCRGEPEPGRRLFAPCLCSGSIMYTHEDCLLQWLQHSGKAVCELCGHCFSFTPIYAPDAPETLALWQVLLTCLRKALLEWLPFVLRVLLAAALWLVVVPLATSWLYRIWIHRTRVLLPHLLYQRLTPACAWSDCVSGLIIAAAIILSFLSLMTFADFLADQILREDW 837
            MEFEG   D+R+L+ LVR++SG  D LI   +G+ P  +                ++DA       +E  ECRVCRGEPEPGRRL+APCLCSGSIM+THEDCLL+WLQHSGK  CELCG  F FTP+Y P AP  + L+QVL TC RK +++WLP  LRVL+ A LWL+ VP+ TSWLYRIWIHRTRVLLP L  QRL  AC WSDC+SG+I+ AAIILSFLSLMTFADFLADQ+LR+D+
Sbjct:    1 MEFEGE--DQRTLNELVRTLSGRLDLLI---DGDQPPHQRAXXXXXXXXXXASPSAEDARGPSPSEDEPPECRVCRGEPEPGRRLYAPCLCSGSIMHTHEDCLLEWLQHSGKDTCELCGALFRFTPVYDPGAPTCVPLYQVLTTCGRKVMVKWLPLCLRVLMVAGLWLLFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNMACIWSDCISGIIVTAAIILSFLSLMTFADFLADQLLRDDF 235
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BLAST of mRNA_P-wetherbeei_contig2005.4.1 vs. uniprot
Match: D8LBR1_ECTSI (RING-CH-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR1_ECTSI)

HSP 1 Score: 281 bits (719), Expect = 4.350e-82
Identity = 146/240 (60.83%), Postives = 176/240 (73.33%), Query Frame = 1 
Query:  178 MEFEGSGLDKRSLSGLVRSVSGNFDRLISTSEGEVPKRR---------------FSKDA-----DSEEVLECRVCRGEPEPGRRLFAPCLCSGSIMYTHEDCLLQWLQHSGKAVCELCGHCFSFTPIYAPDAPETLALWQVLLTCLRKALLEWLPFVLRVLLAAALWLVVVPLATSWLYRIWIHRTRVLLPHLLYQRLTPACAWSDCVSGLIIAAAIILSFLSLMTFADFLADQILREDW 837
            MEFEG   D+R+L+ LVR++SG  D LI   +G+ P  +                ++DA       +E  ECRVCRGEPEPGRRL+APCLCSGSIM+THEDCLL+WLQHSGK  CELCG  F FTP+Y   AP+ + L+QVL TC RK +++WLP  LRVL+ A LWL+ VP+ TSWLYRIWIHRTRVLLP L  QRL  AC WSDC+SG+I+ AAIILSFLSLMTFADFLADQ+LR+D+
Sbjct:    1 MEFEGE--DQRTLNELVRTLSGRLDLLI---DGDQPPHQRAXXXXXXXXXXASPSAEDAHGPSPSEDEPPECRVCRGEPEPGRRLYAPCLCSGSIMHTHEDCLLEWLQHSGKDTCELCGALFRFTPVYDAGAPQRVPLYQVLTTCGRKVMVKWLPLCLRVLMVAGLWLLFVPVCTSWLYRIWIHRTRVLLPQLFLQRLNMACIWSDCISGIIVTAAIILSFLSLMTFADFLADQLLRDDF 235
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BLAST of mRNA_P-wetherbeei_contig2005.4.1 vs. uniprot
Match: A0A7S2RW40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RW40_9STRA)

HSP 1 Score: 230 bits (587), Expect = 3.330e-64
Identity = 110/162 (67.90%), Postives = 131/162 (80.86%), Query Frame = 1 
Query:  325 LECRVCRGEPEPGRRLFAPCLCSGSIMYTHEDCLLQWLQHSGKAVCELCGHCFSFTPIYAPDAPETLALWQVLLTCLRKALLEWLPFVLRVLLAAALWLVVVPLATSWLYRIWIHRTRVLLPHLLYQRLTPACAWSDCVSGLIIAAAIILSFLSLMTFADFL 810
            LECRVCRG  E GR+LFAPCLCSGSIMY H++CLLQWL+HSGK  CELCGH F F P+YA DAP  L + +++ TCLR+ + +WLPF+LR+LLA +LWL VVPL TSWLYRIWIHR+R  +     QRLT  C WSD +SGLI+AAAI+LSFLSLM+FADFL
Sbjct:   15 LECRVCRGPEEEGRKLFAPCLCSGSIMYCHQECLLQWLKHSGKDRCELCGHQFQFNPVYAEDAPTQLPVHRIVRTCLRRLITDWLPFILRILLATSLWLFVVPLTTSWLYRIWIHRSRAFI-----QRLTMPCIWSDSISGLIVAAAIMLSFLSLMSFADFL 171
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BLAST of mRNA_P-wetherbeei_contig2005.4.1 vs. uniprot
Match: I2CQM3_NANGC (E3 ubiquitin-protein ligase MARCH6 (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQM3_NANGC)

HSP 1 Score: 183 bits (464), Expect = 7.020e-53
Identity = 99/175 (56.57%), Postives = 120/175 (68.57%), Query Frame = 1 
Query:  295 FSKDADSEEVLECRVCRGEPEPGRRLFAPCLCSGSIMYTHEDCLLQWLQHSGKAVCELCGHCFSFTPIYAPDAPETLALWQVLLTCLRKALLEWLPFVLRVLLAAALWLVVVPLATSWLYRIWIHRTRVLLPHLLYQRLT---PACAWSDCVSGLIIAAAIILSFLSLMTFADFL 810
              +D D EE   CRVCR   E    LF PC C+GSI  TH++CLLQWLQHSGK  CELC H F F P+YA DAP  +   QVL  CLRKA+ ++LPFV+R+++ A LWL VVP  TSW+YRIWIHR  +L+P L+ +RL        W+D VSG+II   II SFLSLM+FADFL
Sbjct:   41 LDEDHDEEE---CRVCR---ESNGILFRPCKCAGSIRSTHQECLLQWLQHSGKDSCELCKHKFHFQPVYADDAPTHIPARQVLGRCLRKAVCDYLPFVVRLVIVAVLWLGVVPCTTSWIYRIWIHRASLLVPDLIRRRLHGEGSGMLWNDAVSGIIIVGFIIFSFLSLMSFADFL 209
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BLAST of mRNA_P-wetherbeei_contig2005.4.1 vs. uniprot
Match: A0A2P4YC57_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YC57_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.380e-52
Identity = 98/184 (53.26%), Postives = 124/184 (67.39%), Query Frame = 1 
Query:  310 DSEEVLECRVCRGEPEPGRRLFAPCLCSGSIMYTHEDCLLQWLQHSGKAVCELCGHCFSFTPIYAPDAPETLALWQVLLTCLRKALLEWLPFVLRVLLAAALWLVVVPLATSWLYRIWIHRTRVLLPHLLYQRLTPACAWSDCVSGLIIAAAIILSFLSLMTFADFLADQILREDWEEEEAEDL 861
            D E+  ECRVCRGE EP RRLFAPC CSGSI +TH DCL QWL+HSGK+ CELCGH F+FTP+Y  +AP+ L   ++L T LR  LL+WLPF LR +L   LWL V P  TSWLYR+W+ R   ++     +R       +D  SG+I+   I+ SFL+LM+FADFL   +  +  EEE AED+
Sbjct:   22 DDEDEAECRVCRGEAEPDRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHEFTFTPLYDANAPDVLPWTELLTTGLRVVLLKWLPFALRAVLVFVLWLAVAPWCTSWLYRMWLLRASAMVNVNFSERFDAPHIVADIFSGVILIVCIVFSFLALMSFADFLRFHL--DHIEEEIAEDV 203
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BLAST of mRNA_P-wetherbeei_contig2005.4.1 vs. uniprot
Match: A0A3M6VPX7_9STRA (RING-CH-type domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPX7_9STRA)

HSP 1 Score: 192 bits (488), Expect = 5.790e-51
Identity = 96/172 (55.81%), Postives = 122/172 (70.93%), Query Frame = 1 
Query:  295 FSKDADSEEVLECRVCRGEPEPGRRLFAPCLCSGSIMYTHEDCLLQWLQHSGKAVCELCGHCFSFTPIYAPDAPETLALWQVLLTCLRKALLEWLPFVLRVLLAAALWLVVVPLATSWLYRIWIHRTRVLLPHLLYQRLTPACAWSDCVSGLIIAAAIILSFLSLMTFADFL 810
            F+++ + E+  ECRVCRGE EP RRLFAPC CSGSI YTH DCL QWL HSGK+ CELCGH F+FTP+Y  +AP+TL   ++L T LR  LL+WLPF LRV+L   LWL V P  TSWLYR+W+ R   ++     +R   +   +D  SGL++  +II SFL+LM+FADFL
Sbjct:   23 FNEEVEEEDEEECRVCRGEAEPDRRLFAPCKCSGSIRYTHSDCLDQWLTHSGKSFCELCGHEFTFTPLYDANAPDTLPWTELLGTGLRVLLLKWLPFALRVVLVLLLWLAVAPWCTSWLYRMWLLRASAMVNVNFLERFDASHIVTDIFSGLVLIVSIIFSFLALMSFADFL 194
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BLAST of mRNA_P-wetherbeei_contig2005.4.1 vs. uniprot
Match: D0RMI7_PHYIT (RING-CH-type domain-containing protein n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0RMI7_PHYIT)

HSP 1 Score: 182 bits (463), Expect = 2.390e-50
Identity = 90/167 (53.89%), Postives = 114/167 (68.26%), Query Frame = 1 
Query:  310 DSEEVLECRVCRGEPEPGRRLFAPCLCSGSIMYTHEDCLLQWLQHSGKAVCELCGHCFSFTPIYAPDAPETLALWQVLLTCLRKALLEWLPFVLRVLLAAALWLVVVPLATSWLYRIWIHRTRVLLPHLLYQRLTPACAWSDCVSGLIIAAAIILSFLSLMTFADFL 810
            + E+  ECRVCRGE EP RRLFAPC CSGSI +TH DCL QWL+HSGK+ CELCGH F+FTP+Y  +AP+ L   ++L T LR  LL+W PF LR +L   LWL V P  TSWLYR+W+ R   ++     +R       +D  SG+I+   I+ SFL+LM+FADFL
Sbjct:   13 EDEDEAECRVCRGEAEPDRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHQFTFTPLYDANAPDVLPWTELLGTGLRVVLLKWFPFALRAVLVLVLWLAVAPWCTSWLYRMWLLRASAMVNVNFSERFDAPHIVTDIFSGVILIVCIVFSFLALMSFADFL 179
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BLAST of mRNA_P-wetherbeei_contig2005.4.1 vs. uniprot
Match: G4YP00_PHYSP (RING-CH-type domain-containing protein n=8 Tax=Phytophthora TaxID=4783 RepID=G4YP00_PHYSP)

HSP 1 Score: 190 bits (483), Expect = 2.710e-50
Identity = 96/176 (54.55%), Postives = 119/176 (67.61%), Query Frame = 1 
Query:  283 PKRRFSKDADSEEVLECRVCRGEPEPGRRLFAPCLCSGSIMYTHEDCLLQWLQHSGKAVCELCGHCFSFTPIYAPDAPETLALWQVLLTCLRKALLEWLPFVLRVLLAAALWLVVVPLATSWLYRIWIHRTRVLLPHLLYQRLTPACAWSDCVSGLIIAAAIILSFLSLMTFADFL 810
            P   F+ D D +E  ECRVCRGE EPGRRLFAPC CSGSI +TH DCL QWL+HSGK+ CELCGH F+FTP+Y  +AP+ L   ++L T LR  LL+WLPF LR  L   LWL V P  TSWLYR+W+ R   ++     +R       +D  SG+I+   I+ SFL+LM+FADFL
Sbjct:   20 PSSAFAGDEDEDEA-ECRVCRGEAEPGRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHEFTFTPLYDANAPDVLPWTELLTTGLRVVLLKWLPFALRAALVLVLWLAVAPWCTSWLYRMWLLRASAMVNVNFSERFDAPRIVADIFSGVILIVCIVFSFLALMSFADFL 194
[Close]
BLAST of mRNA_P-wetherbeei_contig2005.4.1 vs. uniprot
Match: A0A225X148_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X148_9STRA)

HSP 1 Score: 190 bits (482), Expect = 3.610e-50
Identity = 94/167 (56.29%), Postives = 116/167 (69.46%), Query Frame = 1 
Query:  310 DSEEVLECRVCRGEPEPGRRLFAPCLCSGSIMYTHEDCLLQWLQHSGKAVCELCGHCFSFTPIYAPDAPETLALWQVLLTCLRKALLEWLPFVLRVLLAAALWLVVVPLATSWLYRIWIHRTRVLLPHLLYQRLTPACAWSDCVSGLIIAAAIILSFLSLMTFADFL 810
            D E+  ECRVCRGE EP RRLFAPC CSGSI +TH DCL QWL+HSGK+ CELCGH F+FTP+Y  DAP+ L   ++L T LR  LL+WLPF LR  L  ALWL V P  TSWLYR+W+ R   ++     +R   +   +D  SG+I+   I+ SFL+LM+FADFL
Sbjct:   19 DDEDEAECRVCRGEAEPDRRLFAPCKCSGSIRFTHSDCLEQWLEHSGKSFCELCGHEFAFTPLYDADAPDVLPWTELLTTGLRVVLLKWLPFALRAALVLALWLAVAPWCTSWLYRMWLLRASAMVNVNFSERFDASHIVADIFSGVILIVCIVFSFLALMSFADFL 185
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig2005.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YNH4_9STRA1.080e-8769.78RING-CH-type domain-containing protein n=1 Tax=Tri... [more]
A0A6H5JWM1_9PHAE1.970e-8261.25RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
D8LBR1_ECTSI4.350e-8260.83RING-CH-type domain-containing protein n=1 Tax=Ect... [more]
A0A7S2RW40_9STRA3.330e-6467.90Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
I2CQM3_NANGC7.020e-5356.57E3 ubiquitin-protein ligase MARCH6 (Fragment) n=1 ... [more]
A0A2P4YC57_9STRA1.380e-5253.26E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Phy... [more]
A0A3M6VPX7_9STRA5.790e-5155.81RING-CH-type domain-containing protein n=2 Tax=Per... [more]
D0RMI7_PHYIT2.390e-5053.89RING-CH-type domain-containing protein n=1 Tax=Phy... [more]
G4YP00_PHYSP2.710e-5054.55RING-CH-type domain-containing protein n=8 Tax=Phy... [more]
A0A225X148_9STRA3.610e-5056.29E3 ubiquitin-protein ligase n=1 Tax=Phytophthora m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig2005contigP-wetherbeei_contig2005:3461..4751 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LBR1
PFAMsRINGv
Model size1046
Max annot lvl2759|Eukaryota
KEGG koko:K10661
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000176,GO:0000177,GO:0000178,GO:0000209,GO:0000291,GO:0000956,GO:0001101,GO:0002020,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004536,GO:0004540,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0006139,GO:0006259,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006720,GO:0006725,GO:0006807,GO:0006950,GO:0007275,GO:0008150,GO:0008152,GO:0008299,GO:0008610,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009414,GO:0009415,GO:0009628,GO:0009698,GO:0009699,GO:0009892,GO:0009893,GO:0009987,GO:0010025,GO:0010033,GO:0010035,GO:0010143,GO:0010166,GO:0010243,GO:0010345,GO:0010467,GO:0010468,GO:0010498,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016021,GO:0016070,GO:0016071,GO:0016072,GO:0016073,GO:0016074,GO:0016075,GO:0016180,GO:0016567,GO:0016740,GO:0016787,GO:0016788,GO:0019222,GO:0019438,GO:0019439,GO:0019538,GO:0019748,GO:0019787,GO:0019899,GO:0019941,GO:0022613,GO:0030163,GO:0030176,GO:0030433,GO:0031123,GO:0031125,GO:0031126,GO:0031224,GO:0031227,GO:0031624,GO:0031974,GO:0031981,GO:0031984,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033554,GO:0034427,GO:0034470,GO:0034472,GO:0034475,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0034976,GO:0036211,GO:0036503,GO:0042175,GO:0042221,GO:0042254,GO:0042335,GO:0042802,GO:0043085,GO:0043144,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043628,GO:0043632,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044390,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0046483,GO:0046700,GO:0048518,GO:0048519,GO:0048856,GO:0050789,GO:0050790,GO:0050896,GO:0051341,GO:0051353,GO:0051603,GO:0051716,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0070936,GO:0071025,GO:0071027,GO:0071028,GO:0071051,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098827,GO:0140096,GO:0140097,GO:0140098,GO:1900490,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901565,GO:1901568,GO:1901570,GO:1901575,GO:1901576,GO:1901698,GO:1901700,GO:1902494,GO:1905354,GO:1990381,GO:2001215
Exons2
Evalue2.3e-83
EggNOG OGsCOG5183@1|root,KOG1609@2759|Eukaryota
Ec32 ortholog descriptionZinc finger, RING/FYVE/PHD-type
Ec32 orthologEc-27_003040.1
EC2.3.2.27
Descriptionzinc ion binding
Cds size867
COG categoryA
BRITEko00000,ko00001,ko01000,ko04121
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186189.5660255-UTR-P-wetherbeei_contig2005:3460..36371683186189.5660255-UTR-P-wetherbeei_contig2005:3460..3637Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig2005 3461..3637 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186189.5784144-CDS-P-wetherbeei_contig2005:3637..42871683186189.5784144-CDS-P-wetherbeei_contig2005:3637..4287Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2005 3638..4287 +
1683186189.5875366-CDS-P-wetherbeei_contig2005:4534..47511683186189.5875366-CDS-P-wetherbeei_contig2005:4534..4751Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig2005 4535..4751 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig2005.4.1prot_P-wetherbeei_contig2005.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig2005 3638..4751 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig2005.4.1

>prot_P-wetherbeei_contig2005.4.1 ID=prot_P-wetherbeei_contig2005.4.1|Name=mRNA_P-wetherbeei_contig2005.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=289bp
MEFEGSGLDKRSLSGLVRSVSGNFDRLISTSEGEVPKRRFSKDADSEEVL
ECRVCRGEPEPGRRLFAPCLCSGSIMYTHEDCLLQWLQHSGKAVCELCGH
CFSFTPIYAPDAPETLALWQVLLTCLRKALLEWLPFVLRVLLAAALWLVV
VPLATSWLYRIWIHRTRVLLPHLLYQRLTPACAWSDCVSGLIIAAAIILS
FLSLMTFADFLADQILREDWEEEEAEDLYGEPAEDGDPLPQPAARGEVAA
GGAAAAAAAALEAERPAGGVAAAAAESLEAQPPAAVAVA
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mRNA from alignment at P-wetherbeei_contig2005:3461..4751+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig2005.4.1 ID=mRNA_P-wetherbeei_contig2005.4.1|Name=mRNA_P-wetherbeei_contig2005.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1291bp|location=Sequence derived from alignment at P-wetherbeei_contig2005:3461..4751+ (Phaeothamnion wetherbeei SAG_119_79)
CGCGACCGAACTATTTTGGTGCGAAAAAGGCAGGAAAAGCATACCAAAGG
ACGAGCCCTTCGGTTCTGATCTCTATTCTGACTAGGCACCTTCGCTCTGG
GAACTTTCATCGCAAAATAAGAAAGCTCCCGGCTTTCAGCGCTACCTTTC
TCTCTCGAAAGCGTGTATGGGTGACCGATGGAGTTCGAAGGGAGCGGCCT
TGACAAGAGAAGCCTCTCTGGCCTCGTTCGGAGCGTCTCCGGCAATTTTG
ACAGGCTGATTTCCACTTCCGAAGGCGAAGTCCCAAAGCGGCGCTTCAGC
AAGGATGCGGACAGCGAAGAAGTCCTCGAATGCCGTGTGTGTCGTGGCGA
GCCAGAGCCTGGTCGCCGCCTCTTTGCGCCATGCCTCTGCTCGGGGAGTA
TAATGTACACTCATGAAGATTGCCTTCTGCAGTGGCTCCAACACAGCGGC
AAGGCCGTTTGTGAGCTGTGCGGCCACTGCTTCTCCTTCACGCCGATCTA
CGCGCCTGATGCGCCAGAGACCCTGGCGTTGTGGCAGGTGCTGCTCACGT
GCTTGCGCAAGGCCCTCCTGGAGTGGCTCCCCTTCGTGCTGCGGGTGCTT
CTCGCGGCGGCCCTTTGGCTGGTCGTGGTGCCGCTTGCCACGTCGTGGCT
TTACCGCATCTGGATCCACCGGACCCGCGTGCTCCTGCCGCACCTTCTCT
ACCAGCGGCTCACACCGGCCTGCGCTTGGAGCGACTGCGTCTCTGGGCTG
ATCATCGCCGCAGCCATCATTCTGTCTTTTCTCAGCCTCATGACTTTCGC
CGACTTTCTCGCCGATCAGATCCTTCGGTGAGTTTTGATTTTCGGTGCTG
CCACCTGCTTTGAAAGCGAGGGAAGGAATATTCGCGTCAACAGGCCGAAC
GCTGATTTACAAGCAAAAGTCTTCTGTTTCTCGCAGCGCACCCATTTCCG
GCTCCGATCATTGAGCCTGTAATTACGCAGTAACTTTCCATCGGTCGTAG
CCTGTGATTGTTGGTTCTCCAAACTTGTTTTAATAAGCGACGTCGATTGT
CCTTCTCTTCCGTGCTGTGCTCAGGGAGGACTGGGAGGAGGAAGAGGCGG
AGGACTTGTACGGTGAGCCTGCCGAAGACGGCGACCCGCTGCCGCAGCCG
GCGGCTCGGGGCGAGGTCGCAGCCGGCGGCGCGGCAGCCGCAGCAGCGGC
AGCGTTGGAGGCAGAGAGGCCGGCTGGCGGCGTGGCAGCTGCAGCGGCGG
AAAGTTTGGAGGCGCAGCCGCCGGCGGCCGTGGCGGTGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig2005:3461..4751+

>mRNA_P-wetherbeei_contig2005.4.1 ID=mRNA_P-wetherbeei_contig2005.4.1|Name=mRNA_P-wetherbeei_contig2005.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=867bp|location=Sequence derived from alignment at P-wetherbeei_contig2005:3461..4751+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGAGTTCGAAGGGAGCGGCCTTGACAAGAGAAGCCTCTCTGGCCTCGT
TCGGAGCGTCTCCGGCAATTTTGACAGGCTGATTTCCACTTCCGAAGGCG
AAGTCCCAAAGCGGCGCTTCAGCAAGGATGCGGACAGCGAAGAAGTCCTC
GAATGCCGTGTGTGTCGTGGCGAGCCAGAGCCTGGTCGCCGCCTCTTTGC
GCCATGCCTCTGCTCGGGGAGTATAATGTACACTCATGAAGATTGCCTTC
TGCAGTGGCTCCAACACAGCGGCAAGGCCGTTTGTGAGCTGTGCGGCCAC
TGCTTCTCCTTCACGCCGATCTACGCGCCTGATGCGCCAGAGACCCTGGC
GTTGTGGCAGGTGCTGCTCACGTGCTTGCGCAAGGCCCTCCTGGAGTGGC
TCCCCTTCGTGCTGCGGGTGCTTCTCGCGGCGGCCCTTTGGCTGGTCGTG
GTGCCGCTTGCCACGTCGTGGCTTTACCGCATCTGGATCCACCGGACCCG
CGTGCTCCTGCCGCACCTTCTCTACCAGCGGCTCACACCGGCCTGCGCTT
GGAGCGACTGCGTCTCTGGGCTGATCATCGCCGCAGCCATCATTCTGTCT
TTTCTCAGCCTCATGACTTTCGCCGACTTTCTCGCCGATCAGATCCTTCG
GGAGGACTGGGAGGAGGAAGAGGCGGAGGACTTGTACGGTGAGCCTGCCG
AAGACGGCGACCCGCTGCCGCAGCCGGCGGCTCGGGGCGAGGTCGCAGCC
GGCGGCGCGGCAGCCGCAGCAGCGGCAGCGTTGGAGGCAGAGAGGCCGGC
TGGCGGCGTGGCAGCTGCAGCGGCGGAAAGTTTGGAGGCGCAGCCGCCGG
CGGCCGTGGCGGTGGCA
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