mRNA_P-wetherbeei_contig20041.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20041.1.1
Unique NamemRNA_P-wetherbeei_contig20041.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20041.1.1 vs. uniprot
Match: A0A6N7FDM3_9PROT (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A6N7FDM3_9PROT)

HSP 1 Score: 132 bits (333), Expect = 6.220e-36
Identity = 67/106 (63.21%), Postives = 79/106 (74.53%), Query Frame = 1
Query:    1 SWSEDLAGTGVTVNVLVPGGAADTPIIPEESPYDRAKLIRPDVMVAPIRWLMSDLSDGVTGKRFLGAKWDAGAPWQEAMATSGSGTAWPELAAAASSRGQPLPEGG 318
            +W+ DL GTGVT NVLVPGGAADTP++P E+ YDR+KL  P VMVAPIRWL S  SDGVTG+RF+G  W+   PWQ+AM  +G+   WPELAA AS R Q  PE G
Sbjct:  179 AWAGDLEGTGVTCNVLVPGGAADTPMVPPETGYDRSKLNDPRVMVAPIRWLCSTASDGVTGRRFIGRDWEPDTPWQDAMKVAGAPVGWPELAARAS-RTQARPEPG 283          
BLAST of mRNA_P-wetherbeei_contig20041.1.1 vs. uniprot
Match: A0A2E5V432_9PROT (Short-chain dehydrogenase n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5V432_9PROT)

HSP 1 Score: 108 bits (269), Expect = 1.990e-26
Identity = 54/101 (53.47%), Postives = 70/101 (69.31%), Query Frame = 1
Query:    1 SWSEDLAGTGVTVNVLVPGGAADTPIIPEESPYDRAKLIRPDVMVAPIRWLMSDLSDGVTGKRFLGAKWDAGAPWQEAMATSGSGTAWPELAAAASSRGQP 303
            +W++DL  TGVT NVLVPGGAADTP++P ESPY+R  L++P+VM  P  WL S+ SDG+   RFL   WD  A   + +  +GS  AWP+LA AA+  GQP
Sbjct:  177 AWADDLTDTGVTCNVLVPGGAADTPMVPNESPYERQNLVQPEVMGPPACWLASNDSDGINSMRFLARNWDPAATDSDNIKNAGSPAAWPDLADAAAV-GQP 276          
BLAST of mRNA_P-wetherbeei_contig20041.1.1 vs. uniprot
Match: A0A2E5PNB3_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PNB3_9PROT)

HSP 1 Score: 107 bits (268), Expect = 2.340e-26
Identity = 49/94 (52.13%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    1 SWSEDLAGTGVTVNVLVPGGAADTPIIPEESPYDRAKLIRPDVMVAPIRWLMSDLSDGVTGKRFLGAKWDAGAPWQEAMATSGSGTAWPELAAA 282
            +W+++L GTG+TVNV+VPGG  DTP +  ES  D AK+++P+VM  PI WL +  +DGVTG+RF+G KWD      +A+A +GS   WP+LAAA
Sbjct:  178 AWAKELEGTGITVNVVVPGGPTDTPFLKPESEMDPAKMLKPEVMGPPIAWLCTSKADGVTGQRFIGGKWDPTMSDADAVAEAGSSAGWPDLAAA 271          
BLAST of mRNA_P-wetherbeei_contig20041.1.1 vs. uniprot
Match: A0A2E6GMH0_9PROT (Short-chain dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E6GMH0_9PROT)

HSP 1 Score: 107 bits (267), Expect = 3.930e-26
Identity = 55/102 (53.92%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    1 SWSEDLAGTGVTVNVLVPGGAADTPIIPEESPYDRAKLIRPDVMVAPIRWLMSDLSDGVTGKRFLGAKWDAGAPWQEAMATSGSGTAWPELAAAASSRGQPL 306
            +W++DL  TGVT NVLVPGGAADTP++P ESPY R  L++P VM  P  WL S+ SDG+   RFL   WD  A  ++ + ++G+  AWPELA AAS  GQP+
Sbjct:  177 AWADDLQDTGVTCNVLVPGGAADTPMVPNESPYARENLVQPVVMGPPACWLASEDSDGINSMRFLARNWDPDASDEDNIKSAGAPAAWPELADAASV-GQPV 277          
BLAST of mRNA_P-wetherbeei_contig20041.1.1 vs. uniprot
Match: A0A2E9LMV9_9CHLR (Short-chain dehydrogenase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A2E9LMV9_9CHLR)

HSP 1 Score: 106 bits (264), Expect = 1.390e-25
Identity = 50/93 (53.76%), Postives = 65/93 (69.89%), Query Frame = 1
Query:    7 SEDLAGTGVTVNVLVPGGAADTPIIPEESPYDRAKLIRPDVMVAPIRWLMSDLSDGVTGKRFLGAKWDAGAPWQEAMATSGSGTAWPELAAAA 285
            S +L GTGVTVNVLVPGG A T +IP+++ Y R  +I PDVM+AP+ WL SD SDG+ G+RF+G  WD   P +E +  S +  AWP+L A A
Sbjct:  199 SRELEGTGVTVNVLVPGGMASTDLIPDDTDYQREAMINPDVMMAPVVWLSSDESDGINGQRFIGYHWDENLPLEERLEKSAAPAAWPQLGAQA 291          
BLAST of mRNA_P-wetherbeei_contig20041.1.1 vs. uniprot
Match: A0A1F3ZJ75_9PROT (Uncharacterized protein n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_62_17 TaxID=1797484 RepID=A0A1F3ZJ75_9PROT)

HSP 1 Score: 105 bits (262), Expect = 1.550e-25
Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 1
Query:    1 SWSEDLAGTGVTVNVLVPGGAADTPIIPEESPYDRAKLIRPDVMVAPIRWLMSDLSDGVTGKRFLGAKWDAGAPWQEAMATSGSGTAW 264
            +W+++LAGTGVT NVL+PGGAADT +IP E   DR++L+RP  MV P+ WL+S  SDGVTG+RF    W   AP  EA+A+SG+   W
Sbjct:  182 AWAKELAGTGVTANVLLPGGAADTAMIPHEDFADRSRLVRPQAMVPPLLWLLSRASDGVTGRRFTAKNWSPLAPLAEAIASSGAQAGW 269          
BLAST of mRNA_P-wetherbeei_contig20041.1.1 vs. uniprot
Match: A0A2E3K3T6_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E3K3T6_9PROT)

HSP 1 Score: 104 bits (260), Expect = 5.100e-25
Identity = 58/103 (56.31%), Postives = 70/103 (67.96%), Query Frame = 1
Query:    1 SWSEDL--AGTGVTVNVLVPGGAADTPIIPEESPYDRAKLIRPDVMVAPIRWLMSDLSDGVTGKRFLGAKWDAGAPWQEAMATSGSGTAWPELAAAASSRGQP 303
            SW++D   AG+ VT NVLVPGGAADTP++P +SPY R  L+RP+ MVAP  +L SD S  +   RFLG  WDA    Q  +  SG+  AWPELAAAAS  GQP
Sbjct:  192 SWADDFSNAGSKVTANVLVPGGAADTPMVPHDSPYKREHLVRPEAMVAPAIFLASDESQKINSMRFLGRLWDAHESDQRNIEVSGAPAAWPELAAAAS-LGQP 293          
BLAST of mRNA_P-wetherbeei_contig20041.1.1 vs. uniprot
Match: A0A2A5F2B9_9CHLR (Short-chain dehydrogenase n=4 Tax=Chloroflexi TaxID=200795 RepID=A0A2A5F2B9_9CHLR)

HSP 1 Score: 104 bits (259), Expect = 6.080e-25
Identity = 49/93 (52.69%), Postives = 67/93 (72.04%), Query Frame = 1
Query:    7 SEDLAGTGVTVNVLVPGGAADTPIIPEESPYDRAKLIRPDVMVAPIRWLMSDLSDGVTGKRFLGAKWDAGAPWQEAMATSGSGTAWPELAAAA 285
            S +L GTGVTVNVLVPGG A+T +IP+++ +DR  +I+P+VM AP+ WL SD SDG+ G+RF+G  WD   P +E +  + S  AWP+L A A
Sbjct:  190 SRELEGTGVTVNVLVPGGRANTDLIPDDTVFDRDDMIQPEVMKAPVVWLASDASDGINGQRFIGYYWDEDLPLEERLEKAASPAAWPQLGAQA 282          
BLAST of mRNA_P-wetherbeei_contig20041.1.1 vs. uniprot
Match: A0A2E7QV99_9PROT (Short-chain dehydrogenase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E7QV99_9PROT)

HSP 1 Score: 103 bits (256), Expect = 2.680e-24
Identity = 47/89 (52.81%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    4 WSEDLAGTGVTVNVLVPGGAADTPIIPEESPYDRAKLIRPDVMVAPIRWLMSDLSDGVTGKRFLGAKWDAGAPWQEAMATSGSGTAWPE 270
            W++DL  TGVT N+LVPGG  +T  IPE +P+DR KL +P+ M API WL S+LS+GVT  RF+   WD  AP  +A+  SG   AWP+
Sbjct:  217 WAKDLESTGVTANILVPGGPVNTEFIPENAPFDRTKLTQPEAMRAPICWLASELSNGVTNMRFVARSWDPDAPLADAIKESGGPCAWPD 305          
BLAST of mRNA_P-wetherbeei_contig20041.1.1 vs. uniprot
Match: A0A3D2BVX7_9PROT (Uncharacterized protein n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A3D2BVX7_9PROT)

HSP 1 Score: 97.4 bits (241), Expect = 9.730e-24
Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    7 SEDLAGTGVTVNVLVPGGAADTPIIPEESPYDRAKLIRPDVMVAPIRWLMSDLSDGVTGKRFLGAKWDAGAPWQEAMATSGSGTAWPEL 273
            S+DL GTGV+ NVLVPGG  +T +IPE+S   R KLI+P+VM  PI+WL S  SDG TG RF+GA WD   P  + +  SG+  AW +L
Sbjct:   42 SQDLEGTGVSANVLVPGGMVNTRMIPEQSGIPREKLIQPNVMENPIKWLASVASDGTTGMRFIGALWDEALPMDQRIEQSGAPCAWTQL 130          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20041.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6N7FDM3_9PROT6.220e-3663.21SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A2E5V432_9PROT1.990e-2653.47Short-chain dehydrogenase n=2 Tax=Rhodospirillacea... [more]
A0A2E5PNB3_9PROT2.340e-2652.13Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A2E6GMH0_9PROT3.930e-2653.92Short-chain dehydrogenase n=1 Tax=Rhodospirillacea... [more]
A0A2E9LMV9_9CHLR1.390e-2553.76Short-chain dehydrogenase n=1 Tax=Dehalococcoidia ... [more]
A0A1F3ZJ75_9PROT1.550e-2555.68Uncharacterized protein n=1 Tax=Betaproteobacteria... [more]
A0A2E3K3T6_9PROT5.100e-2556.31Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]
A0A2A5F2B9_9CHLR6.080e-2552.69Short-chain dehydrogenase n=4 Tax=Chloroflexi TaxI... [more]
A0A2E7QV99_9PROT2.680e-2452.81Short-chain dehydrogenase n=1 Tax=Rhodospirillacea... [more]
A0A3D2BVX7_9PROT9.730e-2453.93Uncharacterized protein n=1 Tax=Rhodospirillaceae ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20041contigP-wetherbeei_contig20041:919..1248 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog46429.BV95_01778
PFAMsadh_short
Model size330
Max annot lvl204457|Sphingomonadales
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.61e-22
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,1RI2A@1224|Proteobacteria,2UAV7@28211|Alphaproteobacteria,2KA8H@204457|Sphingomonadales
DescriptionEnoyl-(Acyl carrier protein) reductase
Cds size330
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186189.1855772-CDS-P-wetherbeei_contig20041:918..12481683186189.1855772-CDS-P-wetherbeei_contig20041:918..1248Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20041 919..1248 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20041.1.1prot_P-wetherbeei_contig20041.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20041 919..1248 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20041.1.1

>prot_P-wetherbeei_contig20041.1.1 ID=prot_P-wetherbeei_contig20041.1.1|Name=mRNA_P-wetherbeei_contig20041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=110bp
SWSEDLAGTGVTVNVLVPGGAADTPIIPEESPYDRAKLIRPDVMVAPIRW
LMSDLSDGVTGKRFLGAKWDAGAPWQEAMATSGSGTAWPELAAAASSRGQ
PLPEGGLKA*
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mRNA from alignment at P-wetherbeei_contig20041:919..1248-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20041.1.1 ID=mRNA_P-wetherbeei_contig20041.1.1|Name=mRNA_P-wetherbeei_contig20041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig20041:919..1248- (Phaeothamnion wetherbeei SAG_119_79)
AGCTGGTCGGAGGACCTCGCGGGAACCGGCGTCACGGTCAACGTGCTGGT ACCGGGAGGCGCCGCGGACACGCCGATCATCCCGGAAGAGTCGCCGTACG ACCGCGCCAAGCTGATCCGGCCGGACGTGATGGTCGCGCCGATCCGGTGG CTGATGTCGGATTTGTCCGACGGCGTGACGGGCAAGCGCTTTCTCGGCGC AAAGTGGGATGCAGGAGCGCCCTGGCAGGAGGCTATGGCGACTTCAGGAT CTGGAACTGCGTGGCCGGAGCTTGCAGCAGCCGCGTCGTCACGTGGTCAG CCTCTGCCGGAAGGTGGGCTCAAGGCTTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20041:919..1248-

>mRNA_P-wetherbeei_contig20041.1.1 ID=mRNA_P-wetherbeei_contig20041.1.1|Name=mRNA_P-wetherbeei_contig20041.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=330bp|location=Sequence derived from alignment at P-wetherbeei_contig20041:919..1248- (Phaeothamnion wetherbeei SAG_119_79)
AGCTGGTCGGAGGACCTCGCGGGAACCGGCGTCACGGTCAACGTGCTGGT
ACCGGGAGGCGCCGCGGACACGCCGATCATCCCGGAAGAGTCGCCGTACG
ACCGCGCCAAGCTGATCCGGCCGGACGTGATGGTCGCGCCGATCCGGTGG
CTGATGTCGGATTTGTCCGACGGCGTGACGGGCAAGCGCTTTCTCGGCGC
AAAGTGGGATGCAGGAGCGCCCTGGCAGGAGGCTATGGCGACTTCAGGAT
CTGGAACTGCGTGGCCGGAGCTTGCAGCAGCCGCGTCGTCACGTGGTCAG
CCTCTGCCGGAAGGTGGGCTCAAGGCTTAG
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