mRNA_P-wetherbeei_contig20022.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20022.2.1
Unique NamemRNA_P-wetherbeei_contig20022.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig20022.2.1 vs. uniprot
Match: A0A521YYX7_9PROT (O-antigen ligase domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521YYX7_9PROT)

HSP 1 Score: 259 bits (663), Expect = 1.370e-81
Identity = 129/203 (63.55%), Postives = 164/203 (80.79%), Query Frame = 1
Query:    1 VMTRSRMGNTAFFSSLLVAGCIALALSRHASRSTMVLIGSLIVMDIFIVGAWFGVEKTVQRIEQTTAQDVEERVDPSGQALAIYRDFPLFGSGAGTFYTVFSRYRGEDILPFFDFVHNDYVQMLTDTGVIGLALVGAFALMALVAALLAQARRRDPLARGMGFAAVMGIVSLGIHSAVDFNLQIPANAFAFMLLLAFGWLSLY 609
            VMTRSRMGNTAFFSSLL+AG +AL L RHA+RST++LI SLIV+DIFIVG WFGVEKT+ R++QTTA DVE+RV+PS  AL + +D+P+ G+GAG+FY  F RYRG DI  F+D  HNDY Q L +TG +G  L+G   L+AL+ A+L  +RRRDPLARG  FAA+MG+ ++ IHS VDFNLQIPANA AF++LLA+ W++L+
Sbjct:  244 VMTRSRMGNTAFFSSLLIAGSVALLLRRHATRSTVILIASLIVIDIFIVGTWFGVEKTLDRLQQTTAVDVEQRVEPSVYALDMLKDYPVLGAGAGSFYGAFPRYRGPDIGAFYDHAHNDYTQFLVETGPLGALLIGTLPLLALINAVLVLSRRRDPLARGFAFAALMGVTAIAIHSTVDFNLQIPANALAFVVLLAYAWIALF 446          
BLAST of mRNA_P-wetherbeei_contig20022.2.1 vs. uniprot
Match: A0A0S8B0S8_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Betaproteobacteria bacterium SG8_39 TaxID=1703390 RepID=A0A0S8B0S8_9PROT)

HSP 1 Score: 243 bits (619), Expect = 1.560e-78
Identity = 123/191 (64.40%), Postives = 150/191 (78.53%), Query Frame = 1
Query:   64 IALALSRHASRSTMVLIGSLIVMDIFIVGAWFGVEKTVQRIEQTTAQDVEERVDPSGQALAIYRDFPLFGSGAGTFYTVFSRYRGEDILPFFDFVHNDYVQMLTDTGVIGLALVGAFALMALVAALLAQARRRDPLARGMGFAAVMGIVSLGIHSAVDFNLQIPANAFAFMLLLAFGWLSLYLGRESASAG 636
            I LALSRHA+RST+V I SLI++DIFIVGAWFGV+KT+QRIEQTTA +V ERVDP+  A+ I  D+P FG+G GTFY  + RYRG DILP++D VHNDY+Q+ T+TGV GL L G   L++  AA+LA +RRRDPLARG+ F  VMGI +L IHS VDFNLQIPANAF F +LLA GWL+L+L R+    G
Sbjct:    1 IGLALSRHATRSTVVFIASLIIIDIFIVGAWFGVDKTIQRIEQTTAGEVRERVDPAIYAVRILDDYPWFGTGGGTFYNAYPRYRGADILPYYDHVHNDYMQLATETGVPGLVLAGGVVLLSFFAAVLALSRRRDPLARGVAFGVVMGITALAIHSTVDFNLQIPANAFIFSVLLALGWLALFLERQVRGQG 191          
BLAST of mRNA_P-wetherbeei_contig20022.2.1 vs. uniprot
Match: A0A6M4H9X2_9PROT (Uncharacterized protein n=1 Tax=Usitatibacter palustris TaxID=2732487 RepID=A0A6M4H9X2_9PROT)

HSP 1 Score: 237 bits (605), Expect = 9.560e-73
Identity = 119/205 (58.05%), Postives = 157/205 (76.59%), Query Frame = 1
Query:    7 TRSRMGNTAFFSSLLVAGCIALALSRHASRSTMVLIGSLIVMDIFIVGAWFGVEKTVQRIEQTTAQDVEERVDPSGQALAIYRDFPLFGSGAGTFYTVFSRYRGEDILPFFDFVHNDYVQMLTDTGVIGLALVGAFALMALVAALLAQARRRDPLARGMGFAAVMGIVSLGIHSAVDFNLQIPANAFAFMLLLAFGWLSLYLGRE 621
            T SRMGNTAFF+SL+VAG I +ALSR A+R+T+VL+ SL+V+D+ IVG+WFGVEK   RIEQTT  DV+ER DP+   L +  D+P+ G+G GTFY  F RYR   ++ FFD+ HNDY Q   ++G++GLAL+     ++L AA+LAQARRRDPL RGM FA++MG+ ++ IH+ VDFNLQIPANA  F++LLAF W+SL+L R 
Sbjct:  264 THSRMGNTAFFASLIVAGVIGIALSRKATRNTVVLLVSLVVIDLVIVGSWFGVEKLAARIEQTTIADVQEREDPATHTLKLVEDYPVLGAGPGTFYVAFPRYRPASVVLFFDYAHNDYAQFAAESGLLGLALLALVVAVSLAAAVLAQARRRDPLMRGMAFASIMGVSAILIHATVDFNLQIPANAVFFVVLLAFAWISLHLERH 468          
BLAST of mRNA_P-wetherbeei_contig20022.2.1 vs. uniprot
Match: A0A6M4GWQ9_9PROT (Uncharacterized protein n=1 Tax=Usitatibacter rugosus TaxID=2732067 RepID=A0A6M4GWQ9_9PROT)

HSP 1 Score: 234 bits (597), Expect = 8.550e-72
Identity = 114/207 (55.07%), Postives = 157/207 (75.85%), Query Frame = 1
Query:    7 TRSRMGNTAFFSSLLVAGCIALALSRHASRSTMVLIGSLIVMDIFIVGAWFGVEKTVQRIEQTTAQDVEERVDPSGQALAIYRDFPLFGSGAGTFYTVFSRYRGEDILPFFDFVHNDYVQMLTDTGVIGLALVGAFALMALVAALLAQARRRDPLARGMGFAAVMGIVSLGIHSAVDFNLQIPANAFAFMLLLAFGWLSLYLGRESA 627
            T SRMGNTAFFS+L++AG + + LSR+A+R+T++L+ SL+V+D+ IVG+WFGVEK   RIE TT +DV  R +P+   L + +D+P+ G+G GTFY  F +YR E ++ F+D  HNDY Q+  ++G++GL+L+G   L++L+AAL AQ  RRDPL RGM FA+ MGI +L IHS VDFNLQIPANA  FM++LA GW+SL+L R  A
Sbjct:  246 THSRMGNTAFFSALMIAGVLGIVLSRYATRNTVILLASLVVLDLLIVGSWFGVEKLAARIEATTVEDVRTREEPAAYTLPLIKDYPILGAGPGTFYVAFPKYRPETVVSFYDHAHNDYAQIAAESGILGLSLLGGVVLLSLIAALRAQWVRRDPLMRGMAFASTMGITALLIHSWVDFNLQIPANAALFMVILALGWISLHLDRAHA 452          
BLAST of mRNA_P-wetherbeei_contig20022.2.1 vs. uniprot
Match: A0A1F4AC77_9PROT (Uncharacterized protein (Fragment) n=1 Tax=Betaproteobacteria bacterium RIFCSPLOWO2_02_FULL_65_20 TaxID=1797488 RepID=A0A1F4AC77_9PROT)

HSP 1 Score: 228 bits (582), Expect = 3.960e-69
Identity = 122/215 (56.74%), Postives = 152/215 (70.70%), Query Frame = 1
Query:    1 VMTRSRMGNTAFFSSLLVAGCIALALSRHASRSTMVLIGSLIVMDIFIVGAWFGVEKTVQRIEQTTA----------------QDVEERVDPSGQALAIYRDFPLFGSGAGTFYTVFSRYRGEDILPFFDFVHNDYVQMLTDTGVIGLALVGAFALMALVAALLAQARRRDPLARGMGFAAVMGIVSLGIHSAVDFNLQIPANAFAFMLLLAFGW 597
            VMTRSRMGN+AFF S+LVAG I LALSRHA+RST++L+ SL+V+DIF+VGAWFGVEK + R+EQT+                 Q VEERV+P   AL   ++FP  GSG GTFY VF +YR ++I  ++D  HNDYVQ  T+TGV+G+ LVG   L   + AL  Q +RRDPLARG+ F   MGI++L IHS VDFNLQ PANA  F++LLA GW
Sbjct:  275 VMTRSRMGNSAFFVSMLVAGAIGLALSRHATRSTVILLVSLVVIDIFVVGAWFGVEKVIHRLEQTSLTRSDKARDQASGKGQEQSVEERVEPGLMALKALKEFPFVGSGGGTFYVVFPKYREQEIDGWYDHAHNDYVQFATETGVLGVGLVGLLVLATFLVALKTQYQRRDPLARGVAFGVTMGIIALMIHSWVDFNLQRPANALTFVVLLAMGW 489          
BLAST of mRNA_P-wetherbeei_contig20022.2.1 vs. uniprot
Match: A0A3M0YFJ5_9GAMM (O-antigen ligase family protein (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M0YFJ5_9GAMM)

HSP 1 Score: 222 bits (566), Expect = 1.270e-68
Identity = 121/216 (56.02%), Postives = 158/216 (73.15%), Query Frame = 1
Query:    1 VMTRSRMGNTAFFSSLLVAGCIALALSRHASRSTMVLIGSLIVMDIFIVGAWFGVEKTVQRIEQTT-AQDVEERVDPSGQALAIYRDFPLFGSGAGTFYTVFSRYRGEDILPFFDFVHNDYVQMLTDTGVIGLALVGAFALMALVAALLAQARRRDPLARGMGFAAVMGIVSLGIHSAVDFNLQIPANAFAFMLLLAFGWLSLYLGRESASAGNRP 645
            V+T SRMGN+AF  SLL+AG +AL L R A R  ++LI SLI++DI IVG WFG ++  +R+E+T+ A +V + VD    A  +++DFPL G+G GTFY VF RYRGED   FFD  HNDY+++L + G+IGL L+G   +++L A++LAQARRRDPL RGMGFAA MGI +L IHSAVDFNLQIPANA  FM++LA GW++   G  S  A  +P
Sbjct:  115 VLTHSRMGNSAFLFSLLIAGGLALVLWRGAPRPVVILISSLILVDILIVGTWFGFDRVAKRLEETSLATEVRDEVDV--YAFRLWQDFPLTGAGLGTFYAVFPRYRGEDAEGFFDHAHNDYLEILDEGGIIGLGLLGGAVVLSLAASVLAQARRRDPLLRGMGFAATMGIAALLIHSAVDFNLQIPANAATFMVVLALGWIAF--GLRSRRAAGKP 326          
BLAST of mRNA_P-wetherbeei_contig20022.2.1 vs. uniprot
Match: A0A521XSY3_9PROT (O-antigen ligase domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521XSY3_9PROT)

HSP 1 Score: 222 bits (565), Expect = 1.550e-66
Identity = 121/219 (55.25%), Postives = 159/219 (72.60%), Query Frame = 1
Query:    1 VMTRSRMGNTAFFSSLLVAGCIALALSRHASRSTMVLIGSLIVMDIFIVGAWFGVEKTVQRIEQTTAQDVEERVDPSGQALAIYRDFPLFGSGAGTFYTVFSRYRGEDILPFFDFVHNDYVQMLTDTGVIGLALVGAFALMALVAALLAQARRRDPLARGMGFAAVMGIVSLGIHSAVDFNLQIPANAFAFMLLLAFGWLSLYLGRESASAGNRPGRAR 657
            V+T SRMGNT+FF SLLVAG I L L++ A++S +VLI SLIV+DIFIVGA+FGV++ + RIEQTT Q  E+R + +  AL +++D+P+FGSG G+F  VF RY  +D+   +   HNDY+Q+  +TGV+G+ L+G     +L+AAL AQ  R DPL R + FAA+M I++LG+HSAVDFNLQIPANA  FMLLLAF W+SLY  R    A   PG  R
Sbjct:  251 VLTHSRMGNTSFFVSLLVAGAIGLLLAKRATKSMVVLIASLIVIDIFIVGAYFGVQRVLDRIEQTTMQ-AEDRDEIAIDALRMWKDYPVFGSGLGSFQVVFPRYSQQDLGVLYTHAHNDYLQLAAETGVVGITLLGLLVFTSLLAALRAQIMRHDPLMRAISFAAMMAIIALGMHSAVDFNLQIPANALTFMLLLAFAWISLYH-RYDGEAQAEPGSRR 467          
BLAST of mRNA_P-wetherbeei_contig20022.2.1 vs. uniprot
Match: A0A1F4B257_9PROT (Uncharacterized protein n=2 Tax=unclassified Betaproteobacteria TaxID=33809 RepID=A0A1F4B257_9PROT)

HSP 1 Score: 221 bits (563), Expect = 4.990e-66
Identity = 127/239 (53.14%), Postives = 162/239 (67.78%), Query Frame = 1
Query:    1 VMTRSRMGNTAFFSSLLVAGCIALALSRHASRSTMVLIGSLIVMDIFIVGAWFGVEKTVQRIEQTTA------------QDVEERVDPSGQALAIYRDFPLFGSGAGTFYTVFSRYRGEDILPFF--DFVHNDYVQMLTDTGVIGLALVGAFALMALVAALLAQARRRDPLARGMGFAAVMGIVSLGIHSAVDFNLQIPANAFAFMLLLAFGWLSLYLGRES---------ASAGNRPG 648
            VMTRSR GN AFF+S+LVAG + LALSRHA+RS ++LI SL+V+D+FIVGAWFGV+K + R+EQT+             Q +EER DP+  AL + RD+P  GSG GTF + F +YR E++   F  +  HNDY Q L +TGVIGLAL+G   L+  V AL AQ +R DPLARG+ F A MGIVSL IHS VDFNLQ P+NA  F+++LA  W + Y+GR+          A+AG  PG
Sbjct:  280 VMTRSRGGNGAFFASMLVAGALGLALSRHATRSVVILIASLVVIDVFIVGAWFGVDKVMHRLEQTSLTRDARAVAGTSEQSLEERGDPALFALNMARDYPWLGSGGGTFASTFMKYRTEELAGDFYVNAAHNDYAQFLVETGVIGLALMGLVVLLCFVTALKAQYQRTDPLARGVAFGATMGIVSLMIHSWVDFNLQTPSNALTFVVVLAMAWPAAYVGRQRHASESEEDRAAAGTAPG 518          
BLAST of mRNA_P-wetherbeei_contig20022.2.1 vs. uniprot
Match: A0A496V678_9GAMM (O-antigen ligase family protein n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A496V678_9GAMM)

HSP 1 Score: 220 bits (561), Expect = 5.570e-66
Identity = 115/209 (55.02%), Postives = 157/209 (75.12%), Query Frame = 1
Query:    1 VMTRSRMGNTAFFSSLLVAGCIALALSRHASRSTMVLIGSLIVMDIFIVGAWFGVEKTVQRIEQTT-AQDVEERVDPSGQALAIYRDFPLFGSGAGTFYTVFSRYRGEDILPFFDFVHNDYVQMLTDTGVIGLALVGAFALMALVAALLAQARRRDPLARGMGFAAVMGIVSLGIHSAVDFNLQIPANAFAFMLLLAFGWLSLYLGRES 624
            V+TRSRMGNTAFF+S++VAG I L LSRHA+RST++L+ SLIV+DI IVGAWFG++K  QR+EQT+   +  + VD     L  ++D+ L GSG G+FYTVF RYR  D+  FFD  HNDY++   +TG++G+ LVG+  + +L+ ALLAQ RRR+ L RG+ F+A+MGI+++  HS VDFNLQIPANA  FM++LA  W++L+L   S
Sbjct:  263 VLTRSRMGNTAFFASMMVAGVIGLMLSRHATRSTVILLVSLIVIDILIVGAWFGIDKVAQRLEQTSFVSETRDEVDV--HTLPYWQDYLLTGSGLGSFYTVFPRYRESDVDGFFDHAHNDYLEFGAETGIVGVLLVGSSVIFSLIVALLAQYRRRESLYRGVAFSAMMGIIAIMTHSFVDFNLQIPANAATFMVILAMAWIALFLPSHS 469          
BLAST of mRNA_P-wetherbeei_contig20022.2.1 vs. uniprot
Match: A0A661BRX0_9GAMM (O-antigen ligase family protein n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A661BRX0_9GAMM)

HSP 1 Score: 219 bits (558), Expect = 9.930e-66
Identity = 118/215 (54.88%), Postives = 156/215 (72.56%), Query Frame = 1
Query:    1 VMTRSRMGNTAFFSSLLVAGCIALALSRHASRSTMVLIGSLIVMDIFIVGAWFGVEKTVQRIEQTTAQDVEERVDPSGQALAIYRDFPLFGSGAGTFYTVFSRYRGEDILPFFDFVHNDYVQMLTDTGVIGLALVGAFALMALVAALLAQARRRDPLARGMGFAAVMGIVSLGIHSAVDFNLQIPANAFAFMLLLAFGWLSLYLGRESASAGNRP 645
            V+T SRMGNTAFF SL +AG I L  S++++RS ++L+ SL+++DI IVG WFG+EK  QR+EQT+    E R + +  AL  ++D+ L GSG G+FY VF +YRG DI      +HNDY+Q  TDTGVIGL L+G   + +L AALLAQ RR DPL RGM FA++MGI+++ IHS+VDFNLQIPANA  F++LLA GW+SL LGR   ++   P
Sbjct:  257 VLTHSRMGNTAFFVSLFIAGAIGLVFSKNSTRSVVILLVSLVIIDILIVGQWFGLEKVKQRLEQTSLA-TENRDEVNIYALRQWQDYRLTGSGLGSFYAVFPQYRGADIHEDNYQMHNDYLQFATDTGVIGLILLGLITVSSLCAALLAQYRRHDPLMRGMSFASIMGIIAILIHSSVDFNLQIPANAATFVILLALGWISLSLGRRELNSSGHP 470          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20022.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A521YYX7_9PROT1.370e-8163.55O-antigen ligase domain-containing protein n=1 Tax... [more]
A0A0S8B0S8_9PROT1.560e-7864.40Uncharacterized protein (Fragment) n=1 Tax=Betapro... [more]
A0A6M4H9X2_9PROT9.560e-7358.05Uncharacterized protein n=1 Tax=Usitatibacter palu... [more]
A0A6M4GWQ9_9PROT8.550e-7255.07Uncharacterized protein n=1 Tax=Usitatibacter rugo... [more]
A0A1F4AC77_9PROT3.960e-6956.74Uncharacterized protein (Fragment) n=1 Tax=Betapro... [more]
A0A3M0YFJ5_9GAMM1.270e-6856.02O-antigen ligase family protein (Fragment) n=1 Tax... [more]
A0A521XSY3_9PROT1.550e-6655.25O-antigen ligase domain-containing protein n=1 Tax... [more]
A0A1F4B257_9PROT4.990e-6653.14Uncharacterized protein n=2 Tax=unclassified Betap... [more]
A0A496V678_9GAMM5.570e-6655.02O-antigen ligase family protein n=2 Tax=Gammaprote... [more]
A0A661BRX0_9GAMM9.930e-6654.88O-antigen ligase family protein n=2 Tax=Gammaprote... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20022contigP-wetherbeei_contig20022:578..1249 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1122599.AUGR01000016_gene2844
PFAMsWzy_C
Model size672
Max annot lvl135619|Oceanospirillales
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.46e-59
EggNOG OGsCOG3307@1|root,COG3307@2|Bacteria,1N225@1224|Proteobacteria,1RQWW@1236|Gammaproteobacteria,1XIRH@135619|Oceanospirillales
DescriptionO-Antigen ligase
Cds size669
COG categoryM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186188.8674202-CDS-P-wetherbeei_contig20022:577..12461683186188.8674202-CDS-P-wetherbeei_contig20022:577..1246Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20022 578..1246 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186188.877839-UTR-P-wetherbeei_contig20022:1246..12491683186188.877839-UTR-P-wetherbeei_contig20022:1246..1249Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20022 1247..1249 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20022.2.1prot_P-wetherbeei_contig20022.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20022 578..1246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20022.2.1

>prot_P-wetherbeei_contig20022.2.1 ID=prot_P-wetherbeei_contig20022.2.1|Name=mRNA_P-wetherbeei_contig20022.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=223bp
MTRSRMGNTAFFSSLLVAGCIALALSRHASRSTMVLIGSLIVMDIFIVGA
WFGVEKTVQRIEQTTAQDVEERVDPSGQALAIYRDFPLFGSGAGTFYTVF
SRYRGEDILPFFDFVHNDYVQMLTDTGVIGLALVGAFALMALVAALLAQA
RRRDPLARGMGFAAVMGIVSLGIHSAVDFNLQIPANAFAFMLLLAFGWLS
LYLGRESASAGNRPGRARSSGP*
back to top

mRNA from alignment at P-wetherbeei_contig20022:578..1249-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20022.2.1 ID=mRNA_P-wetherbeei_contig20022.2.1|Name=mRNA_P-wetherbeei_contig20022.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig20022:578..1249- (Phaeothamnion wetherbeei SAG_119_79)
GTGATGACGCGCTCGCGCATGGGCAACACGGCGTTCTTCTCCAGCCTGCT GGTCGCCGGGTGCATCGCGCTCGCCCTCTCGCGCCACGCCAGCCGCAGCA CGATGGTCCTCATCGGCAGCCTGATCGTGATGGACATCTTCATCGTCGGC GCGTGGTTCGGCGTCGAGAAGACCGTGCAGAGGATCGAGCAGACCACCGC GCAGGACGTGGAGGAAAGGGTGGACCCCAGCGGGCAGGCCCTTGCGATCT ACCGCGACTTCCCGCTGTTCGGCTCGGGCGCGGGGACCTTCTACACCGTG TTCAGCCGCTACCGTGGCGAGGACATCCTGCCGTTCTTCGATTTCGTGCA CAACGACTACGTGCAGATGCTCACCGACACGGGGGTGATCGGCCTGGCGC TGGTCGGGGCGTTCGCGCTGATGGCGCTGGTCGCGGCGTTGCTCGCGCAG GCCAGGCGGCGCGACCCGCTGGCCCGCGGCATGGGATTCGCGGCGGTGAT GGGCATCGTCTCGCTGGGCATCCACAGCGCGGTGGATTTCAACCTTCAGA TTCCCGCGAACGCTTTCGCGTTCATGCTGCTGCTGGCCTTCGGCTGGCTG TCGCTCTACCTCGGACGGGAAAGCGCTAGCGCGGGCAACCGGCCGGGAAG GGCTCGCTCGTCCGGCCCGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig20022:578..1249-

>mRNA_P-wetherbeei_contig20022.2.1 ID=mRNA_P-wetherbeei_contig20022.2.1|Name=mRNA_P-wetherbeei_contig20022.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=669bp|location=Sequence derived from alignment at P-wetherbeei_contig20022:578..1249- (Phaeothamnion wetherbeei SAG_119_79)
ATGACGCGCTCGCGCATGGGCAACACGGCGTTCTTCTCCAGCCTGCTGGT
CGCCGGGTGCATCGCGCTCGCCCTCTCGCGCCACGCCAGCCGCAGCACGA
TGGTCCTCATCGGCAGCCTGATCGTGATGGACATCTTCATCGTCGGCGCG
TGGTTCGGCGTCGAGAAGACCGTGCAGAGGATCGAGCAGACCACCGCGCA
GGACGTGGAGGAAAGGGTGGACCCCAGCGGGCAGGCCCTTGCGATCTACC
GCGACTTCCCGCTGTTCGGCTCGGGCGCGGGGACCTTCTACACCGTGTTC
AGCCGCTACCGTGGCGAGGACATCCTGCCGTTCTTCGATTTCGTGCACAA
CGACTACGTGCAGATGCTCACCGACACGGGGGTGATCGGCCTGGCGCTGG
TCGGGGCGTTCGCGCTGATGGCGCTGGTCGCGGCGTTGCTCGCGCAGGCC
AGGCGGCGCGACCCGCTGGCCCGCGGCATGGGATTCGCGGCGGTGATGGG
CATCGTCTCGCTGGGCATCCACAGCGCGGTGGATTTCAACCTTCAGATTC
CCGCGAACGCTTTCGCGTTCATGCTGCTGCTGGCCTTCGGCTGGCTGTCG
CTCTACCTCGGACGGGAAAGCGCTAGCGCGGGCAACCGGCCGGGAAGGGC
TCGCTCGTCCGGCCCGTGA
back to top