mRNA_P-wetherbeei_contig20004.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig20004.1.1
Unique NamemRNA_P-wetherbeei_contig20004.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig20004.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig20004contigP-wetherbeei_contig20004:2..527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size526
Hectar predicted targeting categorysignal peptide
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186188.3402843-UTR-P-wetherbeei_contig20004:1..1031683186188.3402843-UTR-P-wetherbeei_contig20004:1..103Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20004 2..103 +
1683186188.3564677-UTR-P-wetherbeei_contig20004:430..5271683186188.3564677-UTR-P-wetherbeei_contig20004:430..527Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig20004 431..527 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186188.348943-CDS-P-wetherbeei_contig20004:103..4301683186188.348943-CDS-P-wetherbeei_contig20004:103..430Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig20004 104..430 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig20004.1.1prot_P-wetherbeei_contig20004.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig20004 104..430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig20004.1.1

>prot_P-wetherbeei_contig20004.1.1 ID=prot_P-wetherbeei_contig20004.1.1|Name=mRNA_P-wetherbeei_contig20004.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=109bp
MAVAGTAPPGVPASATALLAVVAVAAVFVAVVAAALSGRAGGGSGRSLRR
RQEEDGDVLPIKTAAASAGRLAACTAAVAKDRRDDGNINRVVDLGAAALR
ARHRVLAA*
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mRNA from alignment at P-wetherbeei_contig20004:2..527+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig20004.1.1 ID=mRNA_P-wetherbeei_contig20004.1.1|Name=mRNA_P-wetherbeei_contig20004.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=526bp|location=Sequence derived from alignment at P-wetherbeei_contig20004:2..527+ (Phaeothamnion wetherbeei SAG_119_79)
AGCCTCGCTTTGGCGGTCTGCTGCTGGATCACCGTCGTGCCGGCGCCGGG
CGGCGACGACGCCGGCAGCGACAGTCACGGCGATAGCCACGGCCGCGTCC
TCATGGCAGTGGCGGGCACCGCGCCGCCCGGCGTGCCGGCGTCAGCGACG
GCGTTACTGGCCGTCGTTGCGGTGGCGGCCGTCTTTGTGGCGGTCGTCGC
GGCAGCACTCAGCGGGCGAGCCGGCGGCGGCAGCGGCCGTTCGCTGCGGC
GGCGGCAAGAAGAAGACGGCGATGTATTGCCGATTAAGACTGCCGCAGCC
TCGGCGGGCCGCCTGGCGGCATGCACTGCTGCCGTTGCCAAGGACCGCCG
GGACGACGGCAATATCAACAGAGTCGTAGACCTCGGAGCCGCGGCGCTGA
GGGCGCGGCACCGTGTTCTCGCCGCCTAATGAAGAGATTTCAAAGGCTCC
AGAAGGCGTTCTTTTAGAGAAAACGGAGACAACAGGAAGATTTAACAAAA
TGCAGGGCATCAAGCCCGCGTCCTTT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig20004:2..527+

>mRNA_P-wetherbeei_contig20004.1.1 ID=mRNA_P-wetherbeei_contig20004.1.1|Name=mRNA_P-wetherbeei_contig20004.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=327bp|location=Sequence derived from alignment at P-wetherbeei_contig20004:2..527+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCAGTGGCGGGCACCGCGCCGCCCGGCGTGCCGGCGTCAGCGACGGC
GTTACTGGCCGTCGTTGCGGTGGCGGCCGTCTTTGTGGCGGTCGTCGCGG
CAGCACTCAGCGGGCGAGCCGGCGGCGGCAGCGGCCGTTCGCTGCGGCGG
CGGCAAGAAGAAGACGGCGATGTATTGCCGATTAAGACTGCCGCAGCCTC
GGCGGGCCGCCTGGCGGCATGCACTGCTGCCGTTGCCAAGGACCGCCGGG
ACGACGGCAATATCAACAGAGTCGTAGACCTCGGAGCCGCGGCGCTGAGG
GCGCGGCACCGTGTTCTCGCCGCCTAA
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