mRNA_P-wetherbeei_contig1997.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1997.2.1 vs. uniprot
Match: A0A836C8Y3_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8Y3_9STRA) HSP 1 Score: 74.7 bits (182), Expect = 1.050e-9 Identity = 35/55 (63.64%), Postives = 41/55 (74.55%), Query Frame = 3
Query: 2835 KCDARKRLLFLRPPRVLVVHLKRLHLRSKITRHVNFPEVLDLRPYCWRDPSTATA 2999
+ DA+KRLL LRPPRVLV HLKRL K HV PE+LD PYCWRDP++A+A
Sbjct: 599 RADAQKRLLILRPPRVLVCHLKRLRPHRKSPLHVRAPEILDASPYCWRDPASASA 653
BLAST of mRNA_P-wetherbeei_contig1997.2.1 vs. uniprot
Match: X6NF64_RETFI (USP domain-containing protein n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NF64_RETFI) HSP 1 Score: 65.5 bits (158), Expect = 2.760e-7 Identity = 32/61 (52.46%), Postives = 39/61 (63.93%), Query Frame = 3
Query: 3537 YHLFGVIVHQGGHSSGHYVAYCRGPE------GWSFLSDSVSRRCTLNDVLSSQAYMLFYE 3701
Y+L VIVH GG +SGHY Y R GW +SD ++ CTL DVLSS+AYMLFY+
Sbjct: 285 YYLTAVIVHHGGVNSGHYTVYRRATNNSDPNSGWVHVSDELAVSCTLRDVLSSEAYMLFYQ 345
BLAST of mRNA_P-wetherbeei_contig1997.2.1 vs. uniprot
Match: A0A0B6YQU7_9EUPU (USP domain-containing protein (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6YQU7_9EUPU) HSP 1 Score: 58.9 bits (141), Expect = 3.320e-7 Identity = 28/57 (49.12%), Postives = 35/57 (61.40%), Query Frame = 3
Query: 3537 YHLFGVIVHQGGHSSGHYVAYCRGPEG--WSFLSDSVSRRCTLNDVLSSQAYMLFYE 3701
Y L+ V H GG SSGHY AYC+ P W F +D+ N V+SS+AY+LFYE
Sbjct: 8 YDLYAVSNHSGGTSSGHYTAYCKNPYSGDWYFFNDARVSSTRSNQVVSSEAYVLFYE 64
BLAST of mRNA_P-wetherbeei_contig1997.2.1 vs. uniprot
Match: M4BDK1_HYAAE (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BDK1_HYAAE) HSP 1 Score: 65.5 bits (158), Expect = 4.830e-7 Identity = 33/58 (56.90%), Postives = 37/58 (63.79%), Query Frame = 3
Query: 3537 YHLFGVIVHQGGHSSGHYVAYCR-GPEGWSFLSDSVSRRCTLNDVLSSQAYMLFYERK 3707
Y L VI+H G SGH+ AY R GP W F+SD R + DVLSS AYMLFYERK
Sbjct: 376 YDLAAVILHHGNERSGHFTAYRRTGPSQWFFVSDETIREVPVTDVLSSCAYMLFYERK 433
BLAST of mRNA_P-wetherbeei_contig1997.2.1 vs. uniprot
Match: A0A8C8SC62_9SAUR (USP domain-containing protein n=1 Tax=Pelusios castaneus TaxID=367368 RepID=A0A8C8SC62_9SAUR) HSP 1 Score: 58.5 bits (140), Expect = 1.300e-6 Identity = 29/66 (43.94%), Postives = 37/66 (56.06%), Query Frame = 3
Query: 3537 YHLFGVIVHQGGHSSGHYVAYCRGPEG----------WSFLSDSVSRRCTLNDVLSSQAYMLFYER 3704
Y L V+VH G SGH+V Y R P W ++SD R+ +L +VLSS AY+LFYER
Sbjct: 25 YRLMAVVVHHGDMHSGHFVTYRRSPPSPKSPLAVSNQWLWVSDDTVRKASLQEVLSSSAYLLFYER 90
BLAST of mRNA_P-wetherbeei_contig1997.2.1 vs. uniprot
Match: UPI000E6F48F3 (ubiquitin carboxyl-terminal hydrolase 19-like n=1 Tax=Papaver somniferum TaxID=3469 RepID=UPI000E6F48F3) HSP 1 Score: 61.6 bits (148), Expect = 1.790e-6 Identity = 32/68 (47.06%), Postives = 39/68 (57.35%), Query Frame = 3
Query: 3537 YHLFGVIVHQGGHSSGHYVAYCRGPEG-----------WSFLSDSVSRRCTLNDVLSSQAYMLFYERK 3707
YHL GV+VH+G +GH AY RG + W L+DSV +L VL SQAYMLFYE+K
Sbjct: 107 YHLIGVVVHEGSVDTGHCFAYVRGDKTVGSEEDNKDFTWYCLNDSVVHEVSLQQVLESQAYMLFYEKK 174
BLAST of mRNA_P-wetherbeei_contig1997.2.1 vs. uniprot
Match: A0A8J5FHX7_ZINOF (Ubiquitinyl hydrolase 1 n=5 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5FHX7_ZINOF) HSP 1 Score: 64.3 bits (155), Expect = 1.880e-6 Identity = 31/68 (45.59%), Postives = 40/68 (58.82%), Query Frame = 3
Query: 3537 YHLFGVIVHQGGHSSGHYVAYCRGPEG------------WSFLSDSVSRRCTLNDVLSSQAYMLFYER 3704
Y LFGV+VH GG S GHY+AY RG W + SD+ R L++VL S+AY+LFYE+
Sbjct: 978 YSLFGVVVHSGGMSGGHYIAYVRGQRNSGKARKDVNSSSWFYASDAHIREAALSEVLQSEAYILFYEK 1045
BLAST of mRNA_P-wetherbeei_contig1997.2.1 vs. uniprot
Match: A9U2A7_PHYPA (Predicted protein (Fragment) n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9U2A7_PHYPA) HSP 1 Score: 62.4 bits (150), Expect = 2.300e-6 Identity = 33/67 (49.25%), Postives = 42/67 (62.69%), Query Frame = 3
Query: 3528 DGNYHLFGVIVHQGGHSSGHYVAYCRGP-----EG---WSFLSDSVSRRCTLNDVLSSQAYMLFYER 3704
DG Y L G + H G GHYVAY +G EG W ++SDS R+ +L+DVL S+AY+LFYER
Sbjct: 258 DGVYQLIGTVEHSGTMRGGHYVAYVKGESEDSTEGKSTWYYISDSHVRKTSLDDVLQSEAYLLFYER 324
BLAST of mRNA_P-wetherbeei_contig1997.2.1 vs. uniprot
Match: A0A8J1XN59_OWEFU (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1XN59_OWEFU) HSP 1 Score: 63.2 bits (152), Expect = 2.560e-6 Identity = 32/68 (47.06%), Postives = 42/68 (61.76%), Query Frame = 3
Query: 3513 GNSGPDGNYHLFGVIVHQGGHSSGHYVAYCRGP----EGWSFLSDSVSRRCTLNDVLSSQAYMLFYER 3704
GNS Y L V+VH GG SGH++ Y R P W + SDS+ +R TL +V+ S+AYMLFYE+
Sbjct: 403 GNSNHSDMYKLVSVVVHLGGVESGHFITYRRAPGEYSHKWLYTSDSMVKRVTLQEVMESEAYMLFYEK 470
BLAST of mRNA_P-wetherbeei_contig1997.2.1 vs. uniprot
Match: A0A2K1IZ57_PHYPA (Ubiquitinyl hydrolase 1 n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1IZ57_PHYPA) HSP 1 Score: 63.9 bits (154), Expect = 2.590e-6 Identity = 33/73 (45.21%), Postives = 46/73 (63.01%), Query Frame = 3
Query: 3528 DGNYHLFGVIVHQGGHSSGHYVAYCRGP-----EG---WSFLSDSVSRRCTLNDVLSSQAYMLFYERKGWSRQ 3722
DG Y L G + H G GHYVAY +G EG W ++SDS R+ +L+DVL S+AY+LFYER+ + ++
Sbjct: 1146 DGVYQLIGTVEHSGTMRGGHYVAYVKGESEDSTEGKSTWYYISDSHVRKTSLDDVLQSEAYLLFYERRAFDQR 1218 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1997.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1997.2.1 >prot_P-wetherbeei_contig1997.2.1 ID=prot_P-wetherbeei_contig1997.2.1|Name=mRNA_P-wetherbeei_contig1997.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=1172bp MAAAAGAGGGRGRGQHGNVAGFAGKPAHRMHKEREGAKEKGLPAVSAEDIback to top mRNA from alignment at P-wetherbeei_contig1997:1915..6091+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1997.2.1 ID=mRNA_P-wetherbeei_contig1997.2.1|Name=mRNA_P-wetherbeei_contig1997.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=4177bp|location=Sequence derived from alignment at P-wetherbeei_contig1997:1915..6091+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1997:1915..6091+ >mRNA_P-wetherbeei_contig1997.2.1 ID=mRNA_P-wetherbeei_contig1997.2.1|Name=mRNA_P-wetherbeei_contig1997.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=3516bp|location=Sequence derived from alignment at P-wetherbeei_contig1997:1915..6091+ (Phaeothamnion wetherbeei SAG_119_79)back to top |