mRNA_P-wetherbeei_contig1997.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig1997.1.1 vs. uniprot
Match: A0A3B3QMV8_9TELE (Ubiquitin carboxyl-terminal hydrolase n=7 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3QMV8_9TELE) HSP 1 Score: 64.7 bits (156), Expect = 1.970e-7 Identity = 47/122 (38.52%), Postives = 67/122 (54.92%), Query Frame = 2
Query: 404 SHLPTRGLQNLGNTCFFNALLQNLYKTKLLHEAM----DAADSLAKGAVTEALRSTLVAMR---EPATQQILVGKHSPKTAA--PYLPSGLHSAIQKAWPGIFKGFRQQDSHELFIHLCCSV 742
S +P +G+ NLGNTCFFNA++QNL +T LL+E + + L + +A + LV EP T +L HS K P P GL + + + P FKG++QQDS EL +L S+
Sbjct: 185 SLIPVKGISNLGNTCFFNAVMQNLSQTHLLNELILEVKEKGHRLKICPLPDANLAPLVVTLPSPEPLTSALLQFLHSMKEPGKGPVPPKGLFNQLCQKAPR-FKGYQQQDSQELLHYLLDSI 305
BLAST of mRNA_P-wetherbeei_contig1997.1.1 vs. uniprot
Match: A0A7K6I7H8_9PASS (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Dasyornis broadbenti TaxID=243059 RepID=A0A7K6I7H8_9PASS) HSP 1 Score: 64.7 bits (156), Expect = 2.040e-7 Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 2
Query: 377 EGAADVTGYSHLPTRGLQNLGNTCFFNALLQNLYKTKLLHEAM-DAADSLAKGAVTEALRSTL------VAMREPATQQILVGKHSPKTAA--PYLPSGLHSAIQKAWPGIFKGFRQQDSHELFIHL 730
+G + G S +P +G+ NLGNTCFFNA++QNL +T +L+E M + + K + S L ++ P T + + HS + A P P L S + + P FKGF+QQDS EL +L
Sbjct: 178 KGKSSANGTSSVPVKGINNLGNTCFFNAVMQNLAQTHVLNELMYEIKEKGTKLKICHTSDSQLDPLVVNLSSPGPLTSAMFLFLHSMREAGKGPLSPKVLFSQLCQKAPR-FKGFQQQDSQELLHYL 303
BLAST of mRNA_P-wetherbeei_contig1997.1.1 vs. uniprot
Match: A0A151NTG9_ALLMI (Ubiquitin carboxyl-terminal hydrolase n=6 Tax=Alligator TaxID=8495 RepID=A0A151NTG9_ALLMI) HSP 1 Score: 64.3 bits (155), Expect = 2.700e-7 Identity = 45/116 (38.79%), Postives = 63/116 (54.31%), Query Frame = 2
Query: 410 LPTRGLQNLGNTCFFNALLQNLYKTKLLHEAM----DAADSLAKGAVTEALRSTLVAMRE---PATQQILVGKHSPKTAA--PYLPSGLHSAIQKAWPGIFKGFRQQDSHELFIHL 730
+P +G+ NLGNTCFFNA++QNL +T +L+E M + L VT++ LV P T + + HS + A P P L S + + P FKGF+QQDS EL +L
Sbjct: 189 IPVKGINNLGNTCFFNAVMQNLAQTHILNELMCEMKEKGTKLKISQVTDSQLDPLVVNLSSPGPLTSAMFLFLHSMREAGKGPLSPKILFSQLCQKAPR-FKGFQQQDSQELLHYL 303
BLAST of mRNA_P-wetherbeei_contig1997.1.1 vs. uniprot
Match: A0A7L3HW16_9PASS (Ubiquitin carboxyl-terminal hydrolase (Fragment) n=1 Tax=Pardalotus punctatus TaxID=254575 RepID=A0A7L3HW16_9PASS) HSP 1 Score: 63.2 bits (152), Expect = 6.240e-7 Identity = 46/127 (36.22%), Postives = 68/127 (53.54%), Query Frame = 2
Query: 377 EGAADVTGYSHLPTRGLQNLGNTCFFNALLQNLYKTKLLHEAM-DAADSLAKGAVTEALRSTL------VAMREPATQQILVGKHSPKTAA--PYLPSGLHSAIQKAWPGIFKGFRQQDSHELFIHL 730
+G + G S +P +G+ NLGNTCFFNA++QNL +T +L+E M + + K + S L ++ P T + + HS + A P P L S + + P FKGF+QQDS EL +L
Sbjct: 178 KGKSSGNGTSAVPVKGINNLGNTCFFNAVMQNLAQTHVLNELMYEIKEKGTKLKICHTSDSQLDPLVVNLSSPGPLTSAMFLFLHSMREAGKGPLSPKVLFSQLCQKAPR-FKGFQQQDSQELLHYL 303
BLAST of mRNA_P-wetherbeei_contig1997.1.1 vs. uniprot
Match: K7F3K2_PELSI (Ubiquitin carboxyl-terminal hydrolase n=37 Tax=Cryptodira TaxID=8464 RepID=K7F3K2_PELSI) HSP 1 Score: 63.2 bits (152), Expect = 6.250e-7 Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 2
Query: 404 SHLPTRGLQNLGNTCFFNALLQNLYKTKLLHEAM-DAADSLAKGAVTEALRSTL------VAMREPATQQILVGKHSPKTAA--PYLPSGLHSAIQKAWPGIFKGFRQQDSHELFIHL 730
S +P +G+ NLGNTCFFNA++QNL +T +L+E M + + K +++A S L ++ P T + HS + A P P L S + + P FKGF+QQDS EL +L
Sbjct: 187 SSIPVKGINNLGNTCFFNAVMQNLAQTHMLNELMYEMKEKGIKLKISQAEDSQLDPLVVNLSSPGPLTSAMFSFLHSMREAGKGPLSPKVLFSQLCQKAPR-FKGFQQQDSQELLHYL 303
BLAST of mRNA_P-wetherbeei_contig1997.1.1 vs. uniprot
Match: A0A8C3RX44_CHESE (Ubiquitinyl hydrolase 1 n=3 Tax=Durocryptodira TaxID=1579337 RepID=A0A8C3RX44_CHESE) HSP 1 Score: 62.4 bits (150), Expect = 6.580e-7 Identity = 46/127 (36.22%), Postives = 71/127 (55.91%), Query Frame = 2
Query: 377 EGAADVTGYSHLPTRGLQNLGNTCFFNALLQNLYKTKLLHEAM-DAADSLAKGAVTEALRSTL------VAMREPATQQILVGKHSPKTAA--PYLPSGLHSAIQKAWPGIFKGFRQQDSHELFIHL 730
+G + G S +P +G+ NLGNTCFFNA++QNL +T +L+E M + + K +++A + L ++ P T + + HS + A P P L S + + P FKGF+QQDS EL +L
Sbjct: 179 KGKSSANGTS-IPVKGINNLGNTCFFNAVMQNLAQTHMLNELMYEMKEKGIKLKISQAEDAQLDPLVVNLSSPGPLTSAMFLFLHSMREAGKGPLSPKVLFSQLCQKAPR-FKGFQQQDSQELLHYL 303
BLAST of mRNA_P-wetherbeei_contig1997.1.1 vs. uniprot
Match: A0A4W4DNN9_ELEEL (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4DNN9_ELEEL) HSP 1 Score: 62.8 bits (151), Expect = 7.270e-7 Identity = 47/120 (39.17%), Postives = 64/120 (53.33%), Query Frame = 2
Query: 383 AADVTGYSHLPTRGLQNLGNTCFFNALLQNLYKTKLLHEAM----DAADSLAKGAVTEALRSTLVAMREPATQQILVGKHSPKTAAPYLPSGLHSAIQKAWPGIFKGFRQQDSHELFIHL 730
AA + RGL NLGNTCFFNA+LQNL +T+LL + + D SL GA+T A+ L ++E T++ +V P L + + K FKGF+QQDS EL +L
Sbjct: 179 AASTANAGTVAVRGLSNLGNTCFFNAVLQNLSQTRLLRQLLSDLRDEEGSLIPGALTLAMCHLLNEIQE--TKKAVV-----------TPRELFTQVCKK-AARFKGFQQQDSQELLRYL 284
BLAST of mRNA_P-wetherbeei_contig1997.1.1 vs. uniprot
Match: A0A674E6Q1_SALTR (Ubiquitin carboxyl-terminal hydrolase n=5 Tax=Salmoninae TaxID=504568 RepID=A0A674E6Q1_SALTR) HSP 1 Score: 62.8 bits (151), Expect = 7.920e-7 Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 2
Query: 380 GAADVTGYSHLPTRGLQNLGNTCFFNALLQNLYKTKLLHEAM-DAADSLAK------GAVTEALRSTLVAMREPATQQILVGKHSPKTAA--PYLPSGLHSAIQKAWPGIFKGFRQQDSHELFIHLCCSV 742
G + V + +P +G+ NLGNTCFFNA++QNL +T +L++ + D + K GA+T L S EP T + + HS K + P P L + + + P FKG++QQDS EL +L S+
Sbjct: 180 GKSPVNNSTLVPVKGINNLGNTCFFNAVMQNLSQTHMLNDLIQDVKEKGHKLKICPPGALTVTLPSP-----EPLTSAMFLFLHSMKESGKGPVNPKILFNQLCQKAPR-FKGYQQQDSQELLHYLLDSI 303
BLAST of mRNA_P-wetherbeei_contig1997.1.1 vs. uniprot
Match: A0A7S4ITV1_9EUKA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4ITV1_9EUKA) HSP 1 Score: 62.8 bits (151), Expect = 8.210e-7 Identity = 42/103 (40.78%), Postives = 53/103 (51.46%), Query Frame = 2
Query: 419 RGLQNLGNTCFFNALLQNLYKTKLLHEAM---DAADSLAKGAVTEALRSTLVAMREPATQQILVGKHSPKTAAPYLPSGLHSAIQKAWPGIFKGFRQQDSHEL 718
RGLQNLGNTCFFN+++QNL +L + + +G +T LR + M T Y PS LHS I + P F+GFRQQDSHEL
Sbjct: 221 RGLQNLGNTCFFNSIMQNLTHLPMLRQFLLKPSGGIPETEGILTFRLREFMANMWNTDTST-------------YNPSALHSTIVRKAPR-FRGFRQQDSHEL 309
BLAST of mRNA_P-wetherbeei_contig1997.1.1 vs. uniprot
Match: A0A8C4VLY4_9SAUR (Ubiquitin carboxyl-terminal hydrolase n=2 Tax=Testudines TaxID=8459 RepID=A0A8C4VLY4_9SAUR) HSP 1 Score: 62.8 bits (151), Expect = 8.260e-7 Identity = 46/127 (36.22%), Postives = 71/127 (55.91%), Query Frame = 2
Query: 377 EGAADVTGYSHLPTRGLQNLGNTCFFNALLQNLYKTKLLHEAM-DAADSLAKGAVTEALRSTL------VAMREPATQQILVGKHSPKTAA--PYLPSGLHSAIQKAWPGIFKGFRQQDSHELFIHL 730
+G + G S +P +G+ NLGNTCFFNA++QNL +T +L+E M + + K +++A + L ++ P T + + HS + A P P L S + + P FKGF+QQDS EL +L
Sbjct: 179 KGRSSANGVS-IPVKGINNLGNTCFFNAVMQNLAQTHMLNELMYEMKEKGIKLKISQAEDAQLDPLVVNLSSPGPLTSAMFLFLHSMREAGKGPLSPKVLFSQLCQKAPR-FKGFQQQDSQELLHYL 303 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1997.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig1997.1.1 >prot_P-wetherbeei_contig1997.1.1 ID=prot_P-wetherbeei_contig1997.1.1|Name=mRNA_P-wetherbeei_contig1997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=276bp MAKKGKKAPNNKRSASKSEISSADAWAAAAAEKDAAKPAKKLEKQKGKPEback to top mRNA from alignment at P-wetherbeei_contig1997:461..1860+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig1997.1.1 ID=mRNA_P-wetherbeei_contig1997.1.1|Name=mRNA_P-wetherbeei_contig1997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1400bp|location=Sequence derived from alignment at P-wetherbeei_contig1997:461..1860+ (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig1997:461..1860+ >mRNA_P-wetherbeei_contig1997.1.1 ID=mRNA_P-wetherbeei_contig1997.1.1|Name=mRNA_P-wetherbeei_contig1997.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=828bp|location=Sequence derived from alignment at P-wetherbeei_contig1997:461..1860+ (Phaeothamnion wetherbeei SAG_119_79)back to top |