mRNA_P-wetherbeei_contig19861.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79
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Overview
Homology
BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: UPI000362E26F (Crp/Fnr family transcriptional regulator n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI000362E26F) HSP 1 Score: 311 bits (798), Expect = 1.660e-105 Identity = 157/204 (76.96%), Postives = 181/204 (88.73%), Query Frame = 1
Query: 64 PAPLDAGVVLQTVNTGDILFQAGDERTHYRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADAA 675
PA L +G VLQ V T +ILFQAG+ER YRVERGAICHYMLW+DGRHDVIEFAFPGDIIGLGHL+ VSTAQAMVDTVVS+VS+E F+SALE+DDRLSFRLA+AVEREF+HLRD+ L+ PAAA+VANFLLA+SS+NGPEGRD LISD+ITAGFVA+KLD+SI+KLGAALL LKK+GAV+ET GLRI++ TLQKLADAA
Sbjct: 3 PASLASGSVLQNVETSEILFQAGEERALYRVERGAICHYMLWADGRHDVIEFAFPGDIIGLGHLRHHVSTAQAMVDTVVSLVSEEEFASALETDDRLSFRLAAAVEREFDHLRDRALSAEEQPAAARVANFLLAISSLNGPEGRDRTLISDDITAGFVAEKLDLSIEKLGAALLSLKKQGAVKETPAGLRILNTETLQKLADAA 206
BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: UPI001558C24F (Crp/Fnr family transcriptional regulator n=1 Tax=Hyphomicrobium sp. CS1GBMeth3 TaxID=1892845 RepID=UPI001558C24F) HSP 1 Score: 301 bits (772), Expect = 1.100e-101 Identity = 155/197 (78.68%), Postives = 172/197 (87.31%), Query Frame = 1
Query: 88 VLQTVNTGDILFQAGDERTHYRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLA-PNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADAA 675
+LQ V TG LFQ GD RT YR+E GA+CHYMLWSDGRHDVIEFAFPGDI+GLGHL VSTAQAMVDTVVS+VSDE F SA + DDRLSFRLASAVEREFEHLRDK+L+ P HVPAAA+VANFLLALS+MN PEGRDP ISD+ITAGFVA++L+MSI+KLGAALL LKKEGAVRET GLRI+D TLQK+ADAA
Sbjct: 1 MLQNVATGATLFQPGDRRTLYRIESGALCHYMLWSDGRHDVIEFAFPGDIVGLGHLSYHVSTAQAMVDTVVSLVSDEEFESASDRDDRLSFRLASAVEREFEHLRDKSLSGPGHVPAAARVANFLLALSAMNTPEGRDPREISDDITAGFVAEQLNMSIEKLGAALLLLKKEGAVRETPSGLRIIDTATLQKVADAA 197
BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: V5SHW7_9HYPH (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5SHW7_9HYPH) HSP 1 Score: 267 bits (683), Expect = 9.880e-88 Identity = 141/225 (62.67%), Postives = 170/225 (75.56%), Query Frame = 1
Query: 1 MAIVCRPETFEHTSEENGKPLPAPLDAGVVLQTVNTGDILFQAGDERTHYRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADAA 675
MA +CR E F K P L +G VLQ+V TG ILFQAGDERT YRVERGAICHY+LW+DGRH+VIEFAFPGDIIGLGHL +T QAMVDTVVSVVS++ AL+ DDRLSFR+ +AVEREF++LR++T+ + A+VAN LLALS +N EGR+ LISD++TAGFVA++LDMSI+ L AALL LK +GAVR+T GL IVD L +LADAA
Sbjct: 1 MATMCRSEEFMDVRGGFEKLNPGALHSGNVLQSVATGAILFQAGDERTLYRVERGAICHYVLWADGRHEVIEFAFPGDIIGLGHLDIHSTTGQAMVDTVVSVVSEDELKDALDHDDRLSFRMTAAVEREFDYLREQTVRQASITPTARVANLLLALSGLNVSEGRNGTLISDDLTAGFVAERLDMSIENLSAALLNLKIQGAVRDTPRGLEIVDMPILHRLADAA 225
BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: A0A6I3KL13_9HYPH (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KL13_9HYPH) HSP 1 Score: 207 bits (528), Expect = 3.240e-64 Identity = 110/205 (53.66%), Postives = 139/205 (67.80%), Query Frame = 1
Query: 64 PAPLDAGVVLQTVNTGDILFQAGDERTHYRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAP-NHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADAA 675
PAP A V + + G+ LF AGD+R YRVERGA+CHY+ W DG H+VIEFAFPGDIIGLGHL STAQA+ T+VS VS+E F LE+D +L+ R +A +REF+ LR + LA +PAA +VA+FL ALS M EGRDP I+DE ++G VAD L+M++D L AAL L+ G V GLRI D L++ ADAA
Sbjct: 23 PAPKSARV--RRMGRGETLFHAGDQRRLYRVERGALCHYLRWDDGHHEVIEFAFPGDIIGLGHLDVHTSTAQAVAKTIVSPVSEEEFEQLLETDGQLAARFTAAADREFDFLRARALATAGKLPAAGRVASFLAALSRMGASEGRDPAFITDEFSSGAVADHLNMTVDALAAALRDLEARGIVTPVRNGLRIADLEALERFADAA 225
BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: UPI0009307BCC (Crp/Fnr family transcriptional regulator n=1 Tax=Hyphomicrobium sp. NDB2Meth4 TaxID=1892846 RepID=UPI0009307BCC) HSP 1 Score: 186 bits (472), Expect = 9.860e-56 Identity = 96/190 (50.53%), Postives = 131/190 (68.95%), Query Frame = 1
Query: 109 GDILFQAGDERTH-YRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADAA 675
G+ LF GD+RT YRVERGA+CHY+ W DGR ++IEFAFPGDIIG GHL ++TAQA+ T+VS VS+EAF LE+D +L+ R A A +REF+++R + +A +VA++L AL+ ++ EGR ELISD ++G VAD+LD+S+D L AL L++ G V GLRI D L++ ADAA
Sbjct: 37 GEALFSRGDQRTQLYRVERGALCHYLRWDDGRREIIEFAFPGDIIGFGHLGEHITTAQAVAKTIVSPVSEEAFEQLLETDAQLAARYAVAADREFDYVRARAVAAGRGKPVKRVASYLAALARISANEGRTRELISDGYSSGAVADQLDISLDALADALRDLEQRGIVAPDDDGLRIADLDALEQFADAA 226
BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: A0A6I0E873_HYPSQ (Crp/Fnr family transcriptional regulator n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0E873_HYPSQ) HSP 1 Score: 184 bits (468), Expect = 6.240e-55 Identity = 94/188 (50.00%), Postives = 125/188 (66.49%), Query Frame = 1
Query: 109 GDILFQAGDERTH-YRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLAD 669
G+ LF +GD+R YRVERGA+CHY+ W+DG H+VIEFAFPGDIIG GHL STAQA+ T+VS +S++ F L D +L+ R A+A +REF++LR + LA + A +VA+FL ALS M EGRDP +I DE ++G VA+ L+M++D L L L+ G V GLRI D L+ AD
Sbjct: 52 GETLFHSGDKRDQLYRVERGALCHYLRWADGHHEVIEFAFPGDIIGFGHLDVHTSTAQAVAKTIVSPISEDEFEQLLAGDGQLAARYAAAADREFDYLRVRALAGSRSAPAKRVASFLAALSRMGASEGRDPSIIRDEFSSGAVAEHLNMTVDALAGVLRELEARGMVTSVREGLRITDIEALETFAD 239
BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: A0A109BAP5_HYPSL (Transcriptional regulator, Crp/Fnr family n=3 Tax=Hyphomicrobium sulfonivorans TaxID=121290 RepID=A0A109BAP5_HYPSL) HSP 1 Score: 173 bits (438), Expect = 3.070e-51 Identity = 90/175 (51.43%), Postives = 116/175 (66.29%), Query Frame = 1
Query: 148 YRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADA 672
YRVERGA+CHY+ W+DGRHDVIEFAFPGDIIG GH+ +STAQA T+VS + F + D +L+ R ASAV+REFE +R + + A +VA+FL ALS M EGRD LI DE+++G VAD+L M+I L L LK G + E+ GLRI+D L++ ADA
Sbjct: 3 YRVERGALCHYIRWADGRHDVIEFAFPGDIIGFGHMDTHISTAQAAARTIVSHIDPAEFEQLMADDAQLAGRYASAVDREFEFMRLRAVQSTQDAPARRVASFLAALSYMGVREGRDANLIPDEVSSGAVADQLGMNIASLARVLSDLKTRGMISESPQGLRILDLDALEQFADA 177
BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: A0A6I3KH20_9HYPH (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KH20_9HYPH) HSP 1 Score: 159 bits (403), Expect = 2.640e-45 Identity = 88/197 (44.67%), Postives = 120/197 (60.91%), Query Frame = 1
Query: 88 VLQTVNTGDILFQAGDERTH-YRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADAA 675
+ + + G++LF+ GD RTH YRVE+G+IC + + SDG HDV+EFAFPGDIIGLG+L VS AQA V+T V V A LE R++ RL +A+ERE LR+ ++A + LS N EGRDP LISD +T G VA L++S+D+L L L++ V T GLR+ L++LADA+
Sbjct: 25 IYRRLAAGEMLFREGDARTHVYRVEQGSICLFKVRSDGSHDVLEFAFPGDIIGLGYLDHHVSAAQAAVETQVGCVPRAAVQLVLEKTPRITSRLTAAIEREVAFLRESQSQAGRTSPVERIAALFVTLSRCNAYEGRDPTLISDSLTCGVVAGYLNVSVDELADCLKELERRDLVEATPKGLRLKSFDELEQLADAS 221
BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: A0A6I0EQH5_HYPSQ (Crp/Fnr family transcriptional regulator n=1 Tax=Hyphomicrobium sp. TaxID=82 RepID=A0A6I0EQH5_HYPSQ) HSP 1 Score: 146 bits (368), Expect = 4.770e-40 Identity = 82/200 (41.00%), Postives = 122/200 (61.00%), Query Frame = 1
Query: 76 DAGVVLQTVNTGDILFQAGDERTH-YRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADA 672
DAG + + G+ LF+ GD+R+H YRVE+G+IC + DG DVIEFAFPGD++GLG+L VS+AQA ++T +S + A L+ RL++A+ERE L++ + A ++A L+ L+ N EGRDP +I+D ++ G VA L+MSID+L AL L+ V ++ GLR+ + L+ LADA
Sbjct: 22 DAG--YRRLVAGEFLFREGDQRSHVYRVEKGSICLFKERLDGSRDVIEFAFPGDLVGLGYLDSHVSSAQATMETALSCLPHSALEPVLDKSPGSKSRLSAAIEREVAFLKEAQVHTGQSKALERIAALLVTLARCNAYEGRDPAIIADSLSCGVVAGYLNMSIDELAGALKELESRDLVEASTKGLRLKNLDMLEHLADA 219
BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Match: A0A6I3KD98_9HYPH (Cyclic nucleotide-binding domain-containing protein n=2 Tax=Hyphomicrobium album TaxID=2665159 RepID=A0A6I3KD98_9HYPH) HSP 1 Score: 147 bits (371), Expect = 1.720e-39 Identity = 80/196 (40.82%), Postives = 121/196 (61.73%), Query Frame = 1
Query: 91 LQTVNTGDILFQAGDERTH-YRVERGAICHYMLWSDGRHDVIEFAFPGDIIGLGHLQRAVSTAQAMVDTVVSVVSDEAFSSALESDDRLSFRLASAVEREFEHLRDKTLAPNHVPAAAKVANFLLALSSMNGPEGRDPELISDEITAGFVADKLDMSIDKLGAALLCLKKEGAVRETSGGLRIVDPHTLQKLADAA 675
L+ + + LFQ D+ YRVERG++CHY DG ++IEF FPGDIIG HL +STA+A +++ VSV+ + F AL++D L+ R+A+ +REF++ R + + A+VA++L A+SS N EGRD LI ++ ++ VAD L MS D L +L L++ ++ T+ GL IVD LQ ++AA
Sbjct: 26 LRLLGPSECLFQEDDKLAQPYRVERGSLCHYTRRDDGSPEIIEFVFPGDIIGFVHLGTHISTARATMESAVSVLPAKEFEMALKADAHLATRVAAMADREFDYRRAHVILSSDDRPVARVASYLAAISSANAHEGRDARLIMEDTSSPAVADALQMSRDTLAVSLAELERRSLIQRTATGLLIVDADALQAFSEAA 221 The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19861.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-wetherbeei_contig19861.1.1 >prot_P-wetherbeei_contig19861.1.1 ID=prot_P-wetherbeei_contig19861.1.1|Name=mRNA_P-wetherbeei_contig19861.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=226bp MAIVCRPETFEHTSEENGKPLPAPLDAGVVLQTVNTGDILFQAGDERTHYback to top mRNA from alignment at P-wetherbeei_contig19861:189..866- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-wetherbeei_contig19861.1.1 ID=mRNA_P-wetherbeei_contig19861.1.1|Name=mRNA_P-wetherbeei_contig19861.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig19861:189..866- (Phaeothamnion wetherbeei SAG_119_79)back to top Coding sequence (CDS) from alignment at P-wetherbeei_contig19861:189..866- >mRNA_P-wetherbeei_contig19861.1.1 ID=mRNA_P-wetherbeei_contig19861.1.1|Name=mRNA_P-wetherbeei_contig19861.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=678bp|location=Sequence derived from alignment at P-wetherbeei_contig19861:189..866- (Phaeothamnion wetherbeei SAG_119_79)back to top |