mRNA_P-wetherbeei_contig1986.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1986.5.1
Unique NamemRNA_P-wetherbeei_contig1986.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1986.5.1 vs. uniprot
Match: D7G2R9_ECTSI (Cilia- and flagella-associated protein 299 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R9_ECTSI)

HSP 1 Score: 327 bits (839), Expect = 3.380e-111
Identity = 163/215 (75.81%), Postives = 188/215 (87.44%), Query Frame = 2
Query:    2 YEDYLDAQVSEQDMYYLGDENLARQLVELGYRGSGDTLQREEFEARKRALRERSAQKGNGAKQLCHAGKDLSQSPFLQALASREELVRNGKLTTVIFLRTLNSRSQEVSAYIDYAHRLRTEDLEAYFEGKRKLMPRATDLSYYNWATQTSTSNSTPNFQVIADSEAGLLLKNKRDRKIIDVNPQANPGDNTSRTEIRSPEYLQICLFDHTTRRKS 646
            YEDYLD+QV+E DMYYL DE+LARQLVELGYRGSGDTLQREEFEARK+ALRERS QK N  KQL  +GKDLS SPFL AL +REELVRNGKLT++IF+R +NS+ QEVS YIDYAHRLR+ + E YFE ++KLMPR TDLSYYNW TQTSTS STPNFQVIAD EAGLL KNKRDRK+++V+P+A PGDNT+RTEIR+PEY Q+ ++DH TRRKS
Sbjct:   25 YEDYLDSQVTETDMYYLQDEDLARQLVELGYRGSGDTLQREEFEARKKALRERSTQKTNAPKQLSSSGKDLSASPFLLALGNREELVRNGKLTSIIFVRDVNSKGQEVSGYIDYAHRLRSTNFEPYFERRKKLMPRPTDLSYYNWETQTSTSTSTPNFQVIADGEAGLLFKNKRDRKVVNVDPKAPPGDNTTRTEIRTPEYRQVVIYDHMTRRKS 239          
BLAST of mRNA_P-wetherbeei_contig1986.5.1 vs. uniprot
Match: F0Y4F2_AURAN (Cilia- and flagella-associated protein 299 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4F2_AURAN)

HSP 1 Score: 317 bits (813), Expect = 2.570e-107
Identity = 159/215 (73.95%), Postives = 185/215 (86.05%), Query Frame = 2
Query:    2 YEDYLDAQVSEQDMYYLGDENLARQLVELGYRGSGDTLQREEFEARKRALRERSAQKGNGAKQLCHAGKDLSQSPFLQALASREELVRNGKLTTVIFLRTLNSRSQEVSAYIDYAHRLRTEDLEAYFEGKRKLMPRATDLSYYNWATQTSTSNSTPNFQVIADSEAGLLLKNKRDRKIIDVNPQANPGDNTSRTEIRSPEYLQICLFDHTTRRKS 646
            YEDYLDAQVSE DMYYL DE LARQLVELGYRGSGDTL+R+EFEARKRALRER  QK N  KQL  A KDLS  PFL ALA+RE LVRNGKLT++IFLR  N++ QEVS YIDYAHRL+TE+ E YF+G+++LMP+ TDLSYYNW TQTST NSTPNFQVIADS+ GLL KNKRDRK+I+V+P+ NPGDN+SR E+++PEYLQ+ +FDH TRRK+
Sbjct:   21 YEDYLDAQVSETDMYYLEDEELARQLVELGYRGSGDTLKRDEFEARKRALRERGTQKANVPKQLASANKDLSAQPFLLALANREALVRNGKLTSIIFLRDKNAKGQEVSGYIDYAHRLKTENFEPYFKGQKRLMPKPTDLSYYNWETQTSTHNSTPNFQVIADSD-GLLFKNKRDRKVINVDPKQNPGDNSSRNELKTPEYLQVVIFDHLTRRKN 234          
BLAST of mRNA_P-wetherbeei_contig1986.5.1 vs. uniprot
Match: A0A7S1CI53_9STRA (Cilia- and flagella-associated protein 299 n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CI53_9STRA)

HSP 1 Score: 309 bits (791), Expect = 6.550e-104
Identity = 151/215 (70.23%), Postives = 186/215 (86.51%), Query Frame = 2
Query:    2 YEDYLDAQVSEQDMYYLGDENLARQLVELGYRGSGDTLQREEFEARKRALRERSAQKGNGAKQLCHAGKDLSQSPFLQALASREELVRNGKLTTVIFLRTLNSRSQEVSAYIDYAHRLRTEDLEAYFEGKRKLMPRATDLSYYNWATQTSTSNSTPNFQVIADSEAGLLLKNKRDRKIIDVNPQANPGDNTSRTEIRSPEYLQICLFDHTTRRKS 646
            YEDYLD+QV   DM+YL DE LARQLVELGYRGSG+TL+R+EFE+RK+A RE+  +K N  K L   GKDLS  PFLQALA+REELVRNGKLT++IF+R +N++ QEVS YIDYAHRL+TE+ E YF+ KRKL+P+ +DLSYYNW TQTSTSNS+PNFQVIAD+EAGLL KNKRDRK+I+V+P++NPGDN++RTEIR+ EYLQ+ ++DH TRRKS
Sbjct:   24 YEDYLDSQVGTTDMFYLEDEELARQLVELGYRGSGETLKRDEFESRKKAEREKHLRKDNAPKPLFSMGKDLSAFPFLQALANREELVRNGKLTSIIFIRDVNAKGQEVSGYIDYAHRLKTENFEPYFDRKRKLLPKPSDLSYYNWETQTSTSNSSPNFQVIADNEAGLLFKNKRDRKVINVDPKSNPGDNSTRTEIRTKEYLQVVIYDHMTRRKS 238          
BLAST of mRNA_P-wetherbeei_contig1986.5.1 vs. uniprot
Match: H3G868_PHYRM (Cilia- and flagella-associated protein 299 n=24 Tax=Oomycota TaxID=4762 RepID=H3G868_PHYRM)

HSP 1 Score: 308 bits (790), Expect = 8.990e-104
Identity = 151/215 (70.23%), Postives = 186/215 (86.51%), Query Frame = 2
Query:    2 YEDYLDAQVSEQDMYYLGDENLARQLVELGYRGSGDTLQREEFEARKRALRERSAQKGNGAKQLCHAGKDLSQSPFLQALASREELVRNGKLTTVIFLRTLNSRSQEVSAYIDYAHRLRTEDLEAYFEGKRKLMPRATDLSYYNWATQTSTSNSTPNFQVIADSEAGLLLKNKRDRKIIDVNPQANPGDNTSRTEIRSPEYLQICLFDHTTRRKS 646
            YEDYLD+Q+SE D++YL DE LARQLVELGYRGSG+TL+R++FEARKRA RER+AQK +  K L  AGKDLSQ PFL ALASRE+LVRNGKLT +IF+R  N++ QE+S YIDYA RL+ E  E YFE K+KL+P+++DLSYYNW TQTSTSNSTPNFQVIADSE GLL KNKRDRK+++V+P+ANPGDN++RTEI++ EYLQ+ ++DH TRRK+
Sbjct:   23 YEDYLDSQLSETDLFYLEDEELARQLVELGYRGSGETLRRDDFEARKRAERERNAQKTSAPKPLASAGKDLSQYPFLAALASREDLVRNGKLTCIIFIRDKNAKGQEISGYIDYALRLKNEPFEPYFERKKKLLPKSSDLSYYNWETQTSTSNSTPNFQVIADSETGLLFKNKRDRKVVNVDPKANPGDNSTRTEIKTKEYLQVVIYDHMTRRKT 237          
BLAST of mRNA_P-wetherbeei_contig1986.5.1 vs. uniprot
Match: A0A2R5GCS3_9STRA (Cilia- and flagella-associated protein 299 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GCS3_9STRA)

HSP 1 Score: 303 bits (777), Expect = 1.050e-101
Identity = 152/217 (70.05%), Postives = 185/217 (85.25%), Query Frame = 2
Query:    2 YEDYLDAQVSEQDMYYLGDENLARQLVELGYRGSGDTLQREEFEARKRALRERSAQKGNGAKQLCHAGKDLSQSPFLQALASREELVRNGKLTTVIFLR--TLNSRSQEVSAYIDYAHRLRTEDLEAYFEGKRKLMPRATDLSYYNWATQTSTSNSTPNFQVIADSEAGLLLKNKRDRKIIDVNPQANPGDNTSRTEIRSPEYLQICLFDHTTRRKS 646
            YEDYLD+Q+S  D YYL DE+LARQLVELGYRGSG+TL+REEFEARK+A R+R +QK +  K L  A KDL+  PFLQALA+REELVRNGKLT++IF+R  T   + QEVS YID+AHRL+TE+ E YF+ K+KLMP+ TDLSYYNW T TSTSNSTPNFQVIAD+EAGLL KNKRDRK+I+V+P+ANPGDN++RTEI++ EYLQ+ ++DH TRRKS
Sbjct:   27 YEDYLDSQISSTDKYYLEDESLARQLVELGYRGSGETLKREEFEARKKAERDRHSQKKSAPKMLASASKDLNGFPFLQALANREELVRNGKLTSIIFIRDKTNKGQGQEVSGYIDFAHRLKTENFEPYFDRKKKLMPKPTDLSYYNWETHTSTSNSTPNFQVIADNEAGLLFKNKRDRKVINVDPKANPGDNSTRTEIQTDEYLQVVIYDHMTRRKS 243          
BLAST of mRNA_P-wetherbeei_contig1986.5.1 vs. uniprot
Match: A0A1V9Z039_9STRA (Cilia- and flagella-associated protein 299 n=10 Tax=Saprolegniaceae TaxID=4764 RepID=A0A1V9Z039_9STRA)

HSP 1 Score: 301 bits (772), Expect = 4.910e-101
Identity = 145/215 (67.44%), Postives = 185/215 (86.05%), Query Frame = 2
Query:    2 YEDYLDAQVSEQDMYYLGDENLARQLVELGYRGSGDTLQREEFEARKRALRERSAQKGNGAKQLCHAGKDLSQSPFLQALASREELVRNGKLTTVIFLRTLNSRSQEVSAYIDYAHRLRTEDLEAYFEGKRKLMPRATDLSYYNWATQTSTSNSTPNFQVIADSEAGLLLKNKRDRKIIDVNPQANPGDNTSRTEIRSPEYLQICLFDHTTRRKS 646
            YEDYLD+Q+SE D++YL DE LARQL+ELGYRG+G+TL+RE+F+ARK++ RER+AQK N  KQL  AGKD SQ PFL ALA+REE+VRNGKLT++IF+R  N + QEVS YIDYA RL++E  E YFE K++L+P+ +DLSYYNW TQT TSNS+PNFQVIADSE GLL KNKRDRK+I+V+P+ANPGDN++RTEI++ EY+Q+ ++DH TRRK+
Sbjct:   23 YEDYLDSQISETDLFYLEDEELARQLIELGYRGTGETLRREDFDARKKSERERNAQKTNLPKQLASAGKDFSQMPFLSALATREEMVRNGKLTSIIFIRDRNPKGQEVSGYIDYALRLKSEPFEPYFERKKRLLPKPSDLSYYNWETQTCTSNSSPNFQVIADSETGLLFKNKRDRKVINVDPKANPGDNSTRTEIKTTEYMQVVIYDHMTRRKN 237          
BLAST of mRNA_P-wetherbeei_contig1986.5.1 vs. uniprot
Match: A0A7S4A7E3_9STRA (Cilia- and flagella-associated protein 299 n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7E3_9STRA)

HSP 1 Score: 300 bits (768), Expect = 1.470e-100
Identity = 150/215 (69.77%), Postives = 178/215 (82.79%), Query Frame = 2
Query:    2 YEDYLDAQVSEQDMYYLGDENLARQLVELGYRGSGDTLQREEFEARKRALRERSAQKGNGAKQLCHAGKDLSQSPFLQALASREELVRNGKLTTVIFLRTLNSRSQEVSAYIDYAHRLRTEDLEAYFEGKRKLMPRATDLSYYNWATQTSTSNSTPNFQVIADSEAGLLLKNKRDRKIIDVNPQANPGDNTSRTEIRSPEYLQICLFDHTTRRKS 646
            YE YLD+QVSE DMYYL DE +ARQLVELGYRGSGDTL+R+EFEAR+RALRER  Q+ N  K L   GKDLS +PFL ALASRE LVRNGKLT++IF+RT N++ Q+VSAYIDYAHRL+TED   YF G++KLMP+ TDLSYYNW TQ ST NSTPNFQV+AD E GLL KNKRDRK+++V+P A PGDN+SR E+   +YLQ+ +FDH TRRK+
Sbjct:   15 YEAYLDSQVSETDMYYLEDEEMARQLVELGYRGSGDTLKRDEFEARRRALRERGTQRANVPKALASHGKDLSGNPFLAALASREALVRNGKLTSIIFVRTTNAKGQQVSAYIDYAHRLKTEDFGPYFAGEKKLMPKPTDLSYYNWETQASTHNSTPNFQVVADQE-GLLFKNKRDRKVVNVDPAAPPGDNSSRNELECEDYLQVTIFDHLTRRKN 228          
BLAST of mRNA_P-wetherbeei_contig1986.5.1 vs. uniprot
Match: A0A835ZKU0_9STRA (Cilia- and flagella-associated protein 299 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKU0_9STRA)

HSP 1 Score: 300 bits (767), Expect = 3.360e-100
Identity = 146/211 (69.19%), Postives = 180/211 (85.31%), Query Frame = 2
Query:   11 YLDAQVSEQDMYYLGDENLARQLVELGYRGSGDTLQREEFEARKRALRERSAQKGNGAKQLCHAGKDLSQSPFLQALASREELVRNGKLTTVIFLRTLNSRSQEVSAYIDYAHRLRTEDLEAYFEGKRKLMPRATDLSYYNWATQTSTSNSTPNFQVIADSEAGLLLKNKRDRKIIDVNPQANPGDNTSRTEIRSPEYLQICLFDHTTRRK 643
            YLD+QV+  DMYYL DE+LARQLVELGYRGSGDTLQR+EF ARK++LR+R+ QK N  KQL  AGK++  SPFL ALA+REELVRNGKLT++IF+R  NS+ QEVS YID+A RL+TE+ E YF+ K+KLMP+ +DLSYYNW TQT+TS STPNFQVIADSEAGLL KNKRDRK+I+V+P+  PGDNT+R E++S EY+Q+ ++DH TRRK
Sbjct:   31 YLDSQVTATDMYYLEDEDLARQLVELGYRGSGDTLQRDEFYARKKSLRDRATQKSNAPKQLASAGKNVDSSPFLHALANREELVRNGKLTSIIFIRDKNSKGQEVSGYIDFAQRLKTENFEPYFDKKKKLMPKPSDLSYYNWETQTTTSTSTPNFQVIADSEAGLLFKNKRDRKVINVDPKVPPGDNTTRIEVKSLEYMQVVIYDHMTRRK 241          
BLAST of mRNA_P-wetherbeei_contig1986.5.1 vs. uniprot
Match: A0A3R7IPN8_9STRA (Cilia- and flagella-associated protein 299 n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7IPN8_9STRA)

HSP 1 Score: 306 bits (783), Expect = 1.980e-98
Identity = 150/215 (69.77%), Postives = 185/215 (86.05%), Query Frame = 2
Query:    2 YEDYLDAQVSEQDMYYLGDENLARQLVELGYRGSGDTLQREEFEARKRALRERSAQKGNGAKQLCHAGKDLSQSPFLQALASREELVRNGKLTTVIFLRTLNSRSQEVSAYIDYAHRLRTEDLEAYFEGKRKLMPRATDLSYYNWATQTSTSNSTPNFQVIADSEAGLLLKNKRDRKIIDVNPQANPGDNTSRTEIRSPEYLQICLFDHTTRRKS 646
            YEDYLD+Q+SE D++YL DE LARQLVELGYRGSG+TL+R++FEARKRA RER+AQK +  K L  AGKDLSQ PFL ALASRE+LVRNGKLT +IF+R  N++ QE+S YIDYA RL+ E  E YFE K+KL+P+++DLSYYNW TQTSTSNST NFQVIADSE GLL KNKRDRK+++V+P+ANPGDN++RTEI++ EYLQ+ ++DH TRRK+
Sbjct:  340 YEDYLDSQLSETDLFYLEDEELARQLVELGYRGSGETLRRDDFEARKRAERERNAQKTSAPKPLASAGKDLSQFPFLAALASREDLVRNGKLTCIIFIRDKNAKGQEISGYIDYALRLKNEPFETYFERKKKLLPKSSDLSYYNWETQTSTSNSTQNFQVIADSETGLLFKNKRDRKVVNVDPKANPGDNSTRTEIKTKEYLQVVIYDHMTRRKT 554          
BLAST of mRNA_P-wetherbeei_contig1986.5.1 vs. uniprot
Match: A0A812J512_9DINO (Cilia- and flagella-associated protein 299 n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A812J512_9DINO)

HSP 1 Score: 293 bits (750), Expect = 8.570e-98
Identity = 144/214 (67.29%), Postives = 177/214 (82.71%), Query Frame = 2
Query:    2 YEDYLDAQVSEQDMYYLGDENLARQLVELGYRGSGDTLQREEFEARKRALRERSAQKGNGAKQLCHAGKDLSQSPFLQALASREELVRNGKLTTVIFLRTLNSRSQEVSAYIDYAHRLRTEDLEAYFEGKRKLMPRATDLSYYNWATQTSTSNSTPNFQVIADSEAGLLLKNKRDRKIIDVNPQANPGDNTSRTEIRSPEYLQICLFDHTTRRK 643
            YEDYLD+Q++E DMYYL DE LARQLVELGYRG G+  +REEFEA K+A RE+   K +  + L   GKDL+  PFLQALA+REELVRNGKLTT+IF+R  N++ QEVS YID+AHRL+TE+ E YFEG + LMPR +DLSYYNW TQTSTSNS+PNFQVIADSE GLL KNKRDRK+I+V+P+A+ GDN++R+EIR+ E+ Q+ L+DH TRRK
Sbjct:   16 YEDYLDSQITELDMYYLDDEELARQLVELGYRGDGEPKKREEFEALKKAEREKHLHKDSAPRPLASLGKDLADKPFLQALANREELVRNGKLTTIIFIRDYNAKGQEVSGYIDFAHRLKTENFEPYFEGTKTLMPRPSDLSYYNWETQTSTSNSSPNFQVIADSETGLLFKNKRDRKVINVDPKASAGDNSTRSEIRTHEFAQVVLYDHMTRRK 229          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1986.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2R9_ECTSI3.380e-11175.81Cilia- and flagella-associated protein 299 n=2 Tax... [more]
F0Y4F2_AURAN2.570e-10773.95Cilia- and flagella-associated protein 299 n=1 Tax... [more]
A0A7S1CI53_9STRA6.550e-10470.23Cilia- and flagella-associated protein 299 n=1 Tax... [more]
H3G868_PHYRM8.990e-10470.23Cilia- and flagella-associated protein 299 n=24 Ta... [more]
A0A2R5GCS3_9STRA1.050e-10170.05Cilia- and flagella-associated protein 299 n=1 Tax... [more]
A0A1V9Z039_9STRA4.910e-10167.44Cilia- and flagella-associated protein 299 n=10 Ta... [more]
A0A7S4A7E3_9STRA1.470e-10069.77Cilia- and flagella-associated protein 299 n=1 Tax... [more]
A0A835ZKU0_9STRA3.360e-10069.19Cilia- and flagella-associated protein 299 n=1 Tax... [more]
A0A3R7IPN8_9STRA1.980e-9869.77Cilia- and flagella-associated protein 299 n=2 Tax... [more]
A0A812J512_9DINO8.570e-9867.29Cilia- and flagella-associated protein 299 n=1 Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1986contigP-wetherbeei_contig1986:4659..6252 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009035204.1
Preferred nameC4orf22
PFAMsDUF4464
Model size689
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue1.76e-100
EggNOG OGs28K8J@1|root,2QSP8@2759|Eukaryota
Ec32 ortholog descriptionPutative: flagellar/basal body protein [Chlamydomonas reinhardtii].
Ec32 orthologEc-11_003260.1
DescriptionDomain of unknown function (DUF4464)
Cds size609
COG categoryS
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1986.5.1prot_P-wetherbeei_contig1986.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1986 4699..6077 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186183.4299598-UTR-P-wetherbeei_contig1986:4658..46981683186183.4299598-UTR-P-wetherbeei_contig1986:4658..4698Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1986 4659..4698 -
1683186183.4778206-UTR-P-wetherbeei_contig1986:6077..60921683186183.4778206-UTR-P-wetherbeei_contig1986:6077..6092Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1986 6078..6092 -
1683186183.4874752-UTR-P-wetherbeei_contig1986:6227..62521683186183.4874752-UTR-P-wetherbeei_contig1986:6227..6252Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1986 6228..6252 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186183.4409297-CDS-P-wetherbeei_contig1986:4698..48691683186183.4409297-CDS-P-wetherbeei_contig1986:4698..4869Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1986 4699..4869 -
1683186183.449915-CDS-P-wetherbeei_contig1986:5302..53831683186183.449915-CDS-P-wetherbeei_contig1986:5302..5383Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1986 5303..5383 -
1683186183.4617882-CDS-P-wetherbeei_contig1986:5720..60771683186183.4617882-CDS-P-wetherbeei_contig1986:5720..6077Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1986 5721..6077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1986.5.1

>prot_P-wetherbeei_contig1986.5.1 ID=prot_P-wetherbeei_contig1986.5.1|Name=mRNA_P-wetherbeei_contig1986.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=203bp
MYYLGDENLARQLVELGYRGSGDTLQREEFEARKRALRERSAQKGNGAKQ
LCHAGKDLSQSPFLQALASREELVRNGKLTTVIFLRTLNSRSQEVSAYID
YAHRLRTEDLEAYFEGKRKLMPRATDLSYYNWATQTSTSNSTPNFQVIAD
SEAGLLLKNKRDRKIIDVNPQANPGDNTSRTEIRSPEYLQICLFDHTTRR
KS*
back to top

mRNA from alignment at P-wetherbeei_contig1986:4659..6252-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1986.5.1 ID=mRNA_P-wetherbeei_contig1986.5.1|Name=mRNA_P-wetherbeei_contig1986.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1594bp|location=Sequence derived from alignment at P-wetherbeei_contig1986:4659..6252- (Phaeothamnion wetherbeei SAG_119_79)
GTACGAAGACTATCTGGATGCGCAGGTGAGAGACGAGAGAACGGCTAAAA GAACCCATTATCCAGTCGAAAATCGTAATAATAGCATCAGTTCGATGCAA AAATCTATCCATTCATCTCGTCCGCCCGATATTACCATCTCCCTCTTGCT AAATCGACAGGTCTCGGAGCAGGACATGTACTACCTCGGGGATGAGAACC TTGCGCGGCAGCTCGTGGAGCTCGGCTACCGGGGCAGCGGCGACACCCTC CAGCGGGAAGAGTTTGAGGCCCGGAAGCGAGCGCTCCGGGAGCGCAGCGC CCAGAAGGGTAACGGTGCCAAGCAGCTCTGTCACGCCGGCAAGGACCTGA GCCAGTCGCCGTTCCTGCAGGCGCTGGCGTCGCGCGAGGAGCTGGTGCGC AACGGCAAGCTGACGACCGTCATCTTCCTCCGGACACTCAACTCACGCAG CCAGGAGGTCAGCGCGTACATTGACTATGCGCACCGCCTTCGCACCGAGG ACCTCGAGGCCTACTTCGAGGGCAAGCGAAAGGTGATTAATTGCTTTTAG AGCGTCGCATTTGCAAATGCAAGGCTGCGCGAAGGAAGTCGGACGGGTTC GGCATTTGGAAGAGAAGTGTGCGGTTCAGGAGAAGGAGGACTGCATCAGA GAGAAGAGCTCCGGCAGCAGGCAGGCTGACCAGGCTCTCCTCATATTGTT CACTGTTGACCACAGCTGTTGGCTTTGACCTCCTATGTCAGCGTGTCGTT GGTGGCTCTGGCGGCAGCAGTTGACAAATACGCCGCAGCACTGTATCAGT GCGTTCCTCCGCTGCACTTCGCCGCCTATTGCCTGTTTTTGCTTTCGCTG CCATTCGTGGTCCGCTCAGCTTATGCCACGGGCCACCGACCTGAGCTACT ACAACTGGGCGACGCAAACTTCAACATCGAATTCAACGCCAAACTTCCAG GTGAGCCGCAAAGGTGTTGGCGGAGTGGTTAGCCAGCAAATGTCCAGTCC CTCGACCTTCACTCTCAATTGAGACTGGCAGGCTTCCGCAAAGCCGAGTT CGCGCGAAATATTGCCCGCCTGGCCCTCTCTTTTGCACGTTTGCGATCTC GTGCAAATCTTAATTCTCTGTCGCTGGGCCGCTGCCGGAAATGAAAGTCC ATATTTTCCCGCGCCGCCCGCCCACTTGTTTGCCGACGCCCGTCAGCTCG CGGCCTCTTTCTCAGTGAGCTTGCTGCCGTAGCTGCCGTACGCTGACCGC CGATCGCTTGCCGCCGCCTCCGCCCGGTCGACTCTCCGCCGAACGCCCAA CGCGCCCCGCCCGGTCGACTCTCCGCCGAACGCCCAACGCGCCCCGCCCG CCCAACCTTCTTTCTCAAATTCTGTATTTGCAGGTGATTGCGGATAGTGA AGCCGGGCTGCTGCTGAAGAACAAACGGGACCGGAAGATCATCGACGTCA ACCCGCAGGCCAACCCGGGCGACAACACGAGTCGCACCGAGATCCGCAGC CCCGAATACCTCCAGATCTGCCTATTCGACCACACCACGCGCAGAAAGAG CTGACGCAGAGCAGAATGCCAGTAACCAAGAACAATTAGACGCC
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1986:4659..6252-

>mRNA_P-wetherbeei_contig1986.5.1 ID=mRNA_P-wetherbeei_contig1986.5.1|Name=mRNA_P-wetherbeei_contig1986.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=609bp|location=Sequence derived from alignment at P-wetherbeei_contig1986:4659..6252- (Phaeothamnion wetherbeei SAG_119_79)
ATGTACTACCTCGGGGATGAGAACCTTGCGCGGCAGCTCGTGGAGCTCGG
CTACCGGGGCAGCGGCGACACCCTCCAGCGGGAAGAGTTTGAGGCCCGGA
AGCGAGCGCTCCGGGAGCGCAGCGCCCAGAAGGGTAACGGTGCCAAGCAG
CTCTGTCACGCCGGCAAGGACCTGAGCCAGTCGCCGTTCCTGCAGGCGCT
GGCGTCGCGCGAGGAGCTGGTGCGCAACGGCAAGCTGACGACCGTCATCT
TCCTCCGGACACTCAACTCACGCAGCCAGGAGGTCAGCGCGTACATTGAC
TATGCGCACCGCCTTCGCACCGAGGACCTCGAGGCCTACTTCGAGGGCAA
GCGAAAGCTTATGCCACGGGCCACCGACCTGAGCTACTACAACTGGGCGA
CGCAAACTTCAACATCGAATTCAACGCCAAACTTCCAGGTGATTGCGGAT
AGTGAAGCCGGGCTGCTGCTGAAGAACAAACGGGACCGGAAGATCATCGA
CGTCAACCCGCAGGCCAACCCGGGCGACAACACGAGTCGCACCGAGATCC
GCAGCCCCGAATACCTCCAGATCTGCCTATTCGACCACACCACGCGCAGA
AAGAGCTGA
back to top