mRNA_P-wetherbeei_contig19851.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19851.1.1
Unique NamemRNA_P-wetherbeei_contig19851.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19851.1.1 vs. uniprot
Match: D8LLY2_ECTSI (30S ribosomal protein S1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLY2_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 5.920e-23
Identity = 54/84 (64.29%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    1 RGKKDVSRFVNADPKEFITGTVASILPYGAFVNIGEGIDGLVHISQIAEGRVSSVEDVLRVGDEVQVRVVVADADSGTVNLSML 252
            RGKKDVS  +  DP EFI G V SI+PYGAFVNI   IDGLVHIS++A GRV SVEDV  +G EVQVR+   + D+ TVNLSM+
Sbjct:  593 RGKKDVSVLLGRDPDEFIPGRVVSIVPYGAFVNIEGNIDGLVHISEMAIGRVDSVEDVCEMGQEVQVRISDINTDNNTVNLSMV 676          
BLAST of mRNA_P-wetherbeei_contig19851.1.1 vs. uniprot
Match: X5CQH7_9EUKA (30S plastidal ribosomal protein S1 1 n=2 Tax=Eukaryota TaxID=2759 RepID=X5CQH7_9EUKA)

HSP 1 Score: 95.1 bits (235), Expect = 1.220e-20
Identity = 53/83 (63.86%), Postives = 60/83 (72.29%), Query Frame = 1
Query:    1 RGKKDVSRFVNADPKEFITGTVASILPYGAFVNIGEGIDGLVHISQIAEGRVSSVEDVLRVGDEVQVRVVVADADSGTVNLSM 249
            R   D+S F NAD KEFITGTV SI  +GAFVN+ EG+DGL+HIS+I EG V SVEDVL  G EVQVRVV  D D   + LSM
Sbjct:  167 RESVDLSEFKNADEKEFITGTVRSIQSFGAFVNLKEGVDGLLHISEIQEGGVKSVEDVLSEGQEVQVRVVSFD-DKRRIGLSM 248          
BLAST of mRNA_P-wetherbeei_contig19851.1.1 vs. uniprot
Match: A0A7S2XXC4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXC4_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.060e-20
Identity = 41/86 (47.67%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 RGKKDVSRFVNADPKEFITGTVASILPYGAFVNIGEGIDGLVHISQIAEGRVSSVEDVLRVGDEVQVRVVVADADSGTVNLSMLEP 258
            RG +DVS++ N DP  ++T TV++++ YGAF+ + EGIDG VHIS++ EGRV  VEDVL+VG  V+ R+V  + ++  ++L+M  P
Sbjct:   93 RGNEDVSKYANFDPNAYVTCTVSNLVSYGAFLTLEEGIDGFVHISELTEGRVEYVEDVLQVGQSVEARIVNVNTETNKIDLTMRAP 178          
BLAST of mRNA_P-wetherbeei_contig19851.1.1 vs. uniprot
Match: A0A835YL04_9STRA (30S ribosomal protein S1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL04_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 1.010e-19
Identity = 48/88 (54.55%), Postives = 62/88 (70.45%), Query Frame = 1
Query:    1 RGKKDVSRFVNADPKEFITGTVASILPYGAFVNIGEGIDGLVHISQIAEGRVSSVEDVLRVGDEVQVRVVVADADSGTVNLSMLEPRE 264
            RG KDVSR+V ADP+ ++ G VA+++P+GAFV +  G+DGLVH SQI  G     ED L  G  V+VRVV ADA+ G + LSML+P E
Sbjct:  472 RGVKDVSRYVGADPEAWVDGMVATVVPFGAFVTLDGGVDGLVHASQICGG--GGAEDALSAGQAVRVRVVGADAERGRLELSMLDPTE 557          
BLAST of mRNA_P-wetherbeei_contig19851.1.1 vs. uniprot
Match: A0A8J5XU66_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XU66_DIALT)

HSP 1 Score: 92.4 bits (228), Expect = 1.990e-19
Identity = 46/89 (51.69%), Postives = 62/89 (69.66%), Query Frame = 1
Query:    1 RGKKDVSRFVNADPKEFITGTVASILPYGAFVNIGEGIDGLVHISQIAEGRVSSVEDVLRVGDEVQVRVVVADADSGTVNLSMLEPREG 267
            R K D+S   + DPK  I GTV S++ +G FV+IG  IDGLVHISQ+ + R ++V DV++VGDEV VR++  DA+   V+LSML   EG
Sbjct:  182 RAKADLSAIADFDPKAMIRGTVVSLMDFGCFVSIGNNIDGLVHISQLQDARTNAVSDVVKVGDEVNVRIMGIDAERQRVSLSMLPYSEG 270          
BLAST of mRNA_P-wetherbeei_contig19851.1.1 vs. uniprot
Match: L1JJS3_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JJS3_GUITC)

HSP 1 Score: 90.5 bits (223), Expect = 5.250e-19
Identity = 47/81 (58.02%), Postives = 59/81 (72.84%), Query Frame = 1
Query:   22 RFVNADPKEFITGTVASILPYGAFVNIGEGIDGLVHISQIAEGRVSSVEDVLRVGDEVQVRVVVADADSGTVNLSMLEPRE 264
            +F N D KEFI GTVAS++ YGAFV IGEG+DGLVHISQI+E R + ++ VL VG EV VR++  D     ++LSM E RE
Sbjct:  194 KFKNFDDKEFIKGTVASLMEYGAFVTIGEGVDGLVHISQISEERDTKIDKVLTVGQEVNVRIINFDQKRKRLSLSMREWRE 274          
BLAST of mRNA_P-wetherbeei_contig19851.1.1 vs. uniprot
Match: A0A7S0JH42_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0JH42_9EUKA)

HSP 1 Score: 90.9 bits (224), Expect = 5.530e-19
Identity = 47/83 (56.63%), Postives = 58/83 (69.88%), Query Frame = 1
Query:    1 RGKKDVSRFVNADPKEFITGTVASILPYGAFVNIGEGIDGLVHISQIAEGRVSSVEDVLRVGDEVQVRVVVADADSGTVNLSM 249
            + + D+S F NADPK F++G V+SI  +GAFV + EG+DGL HIS I+E R   VEDVL VG EVQVRVV  DA    + LSM
Sbjct:  179 KARPDMSEFENADPKVFVSGKVSSITSFGAFVTLKEGVDGLCHISAISEERCERVEDVLSVGQEVQVRVVSFDASKRRLGLSM 261          
BLAST of mRNA_P-wetherbeei_contig19851.1.1 vs. uniprot
Match: A0A7S3ZNT6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNT6_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.050e-18
Identity = 41/82 (50.00%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    4 GKKDVSRFVNADPKEFITGTVASILPYGAFVNIGEGIDGLVHISQIAEGRVSSVEDVLRVGDEVQVRVVVADADSGTVNLSM 249
            G  ++ ++++ADP+EF+ GTV ++L +GAFVNI EG+DGLVHIS++++ RV  +E +L  GD+VQVRVV  D +  T+ L+M
Sbjct:  175 GADELRKYLDADPQEFVEGTVRTVLSWGAFVNIAEGVDGLVHISRVSDDRVEDLEAMLSPGDKVQVRVVEVDLEKATLALAM 256          
BLAST of mRNA_P-wetherbeei_contig19851.1.1 vs. uniprot
Match: F0YMT3_AURAN (Uncharacterized protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YMT3_AURAN)

HSP 1 Score: 89.4 bits (220), Expect = 1.720e-18
Identity = 40/82 (48.78%), Postives = 62/82 (75.61%), Query Frame = 1
Query:    4 GKKDVSRFVNADPKEFITGTVASILPYGAFVNIGEGIDGLVHISQIAEGRVSSVEDVLRVGDEVQVRVVVADADSGTVNLSM 249
            G +++ ++ +ADP EFI+GTV ++L +GAFVNI  G+DGLVHIS++++ RV  ++  L VGDEV+VR++  D D  T+ L+M
Sbjct:  158 GAEELRKYQDADPAEFISGTVRTVLEWGAFVNIAPGVDGLVHISRVSDSRVEDLQAELSVGDEVKVRIIDVDLDKATLGLAM 239          
BLAST of mRNA_P-wetherbeei_contig19851.1.1 vs. uniprot
Match: A0A7S4S8E1_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4S8E1_9DINO)

HSP 1 Score: 84.3 bits (207), Expect = 5.660e-18
Identity = 46/90 (51.11%), Postives = 59/90 (65.56%), Query Frame = 1
Query:    1 RGKKDVSRFVNADPKEFITGTVASILPYGAFVNI----GEGIDGLVHISQIAEGRVSSVEDVLRVGDEVQVRVVVADADSGTVNLSMLEP 258
            RG  D+S F   +  E++TGTVA   P+GAFV +    G   DGLVHI+QI +G V SVED + VG EVQVRVV  D ++G ++LSM  P
Sbjct:   61 RGPADLSAFEGRNSNEWLTGTVARTAPFGAFVTVKLEDGAQADGLVHITQIKDGFVESVEDEVEVGQEVQVRVVSVDTEAGKMSLSMKPP 150          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19851.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLY2_ECTSI5.920e-2364.2930S ribosomal protein S1 n=2 Tax=Ectocarpus TaxID=... [more]
X5CQH7_9EUKA1.220e-2063.8630S plastidal ribosomal protein S1 1 n=2 Tax=Eukar... [more]
A0A7S2XXC4_9STRA5.060e-2047.67Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YL04_9STRA1.010e-1954.5530S ribosomal protein S1 n=1 Tax=Tribonema minus T... [more]
A0A8J5XU66_DIALT1.990e-1951.69Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
L1JJS3_GUITC5.250e-1958.02Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A7S0JH42_9EUKA5.530e-1956.63Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S3ZNT6_9STRA1.050e-1850.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
F0YMT3_AURAN1.720e-1848.78Uncharacterized protein n=2 Tax=Aureococcus anopha... [more]
A0A7S4S8E1_9DINO5.660e-1851.11Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19851contigP-wetherbeei_contig19851:588..1196 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LLY2
PFAMsEF_TS,S1
Model size429
Max annot lvl2759|Eukaryota
KEGG koko:K02357,ko:K14792
Hectar predicted targeting categoryother localisation
Exons2
Evalue9.7e-24
EggNOG OGsCOG0264@1|root,COG0539@1|root,KOG1070@2759|Eukaryota,KOG1071@2759|Eukaryota
Descriptiontranslation elongation factor activity
Cds size429
COG categoryJ
BRITEko00000,ko03009,ko03012,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186183.177324-CDS-P-wetherbeei_contig19851:587..8781683186183.177324-CDS-P-wetherbeei_contig19851:587..878Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19851 588..878 -
1683186183.18594-CDS-P-wetherbeei_contig19851:1058..11961683186183.18594-CDS-P-wetherbeei_contig19851:1058..1196Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19851 1059..1196 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19851.1.1prot_P-wetherbeei_contig19851.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19851 588..1196 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19851.1.1

>prot_P-wetherbeei_contig19851.1.1 ID=prot_P-wetherbeei_contig19851.1.1|Name=mRNA_P-wetherbeei_contig19851.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=143bp
RGKKDVSRFVNADPKEFITGTVASILPYGAFVNIGEGIDGLVHISQIAEG
RVSSVEDVLRVGDEVQVRVVVADADSGTVNLSMLEPREGGGGGDFDDWND
ESGGGGGGRKREKKARFDNLDYDTGSSGSGAAADGDWQKYLND
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mRNA from alignment at P-wetherbeei_contig19851:588..1196-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19851.1.1 ID=mRNA_P-wetherbeei_contig19851.1.1|Name=mRNA_P-wetherbeei_contig19851.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=609bp|location=Sequence derived from alignment at P-wetherbeei_contig19851:588..1196- (Phaeothamnion wetherbeei SAG_119_79)
CGGGGGAAGAAGGACGTGTCACGCTTCGTGAACGCCGACCCTAAGGAGTT TATCACGGGCACGGTGGCCTCCATCCTGCCGTACGGCGCCTTCGTCAATA TCGGCGAGGGGATTGACGGCCTTGTGCACATCTCGCAGGTAGGAACACAG TTCAGGGCCAAGAAGACACTGTGTTTCGCGTTTCCGCAAGTTTTATGGAC TTGGGTGACCAACCATGCTCCAACCATTCGATCTGTCATGTGCGCCGCGC CGCCGCCTCGCTCTTTCGTTTCGCCTTATGCCCGCCGGCCTGCCTTGCCC GTCCGCCTGCCTAACCAGATCGCGGAAGGCCGCGTGAGCAGCGTGGAGGA CGTGCTGCGGGTGGGGGATGAGGTGCAGGTGCGCGTCGTGGTGGCCGATG CCGACTCGGGCACCGTCAACCTCTCCATGCTCGAGCCGCGCGAGGGCGGT GGCGGCGGCGACTTCGACGACTGGAACGACGAGAGCGGCGGCGGCGGCGG CGGCCGGAAGCGGGAAAAGAAGGCGCGGTTTGACAACCTCGACTACGACA CGGGCAGCAGCGGGAGCGGGGCGGCCGCCGATGGGGACTGGCAGAAGTAC CTCAACGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19851:588..1196-

>mRNA_P-wetherbeei_contig19851.1.1 ID=mRNA_P-wetherbeei_contig19851.1.1|Name=mRNA_P-wetherbeei_contig19851.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=429bp|location=Sequence derived from alignment at P-wetherbeei_contig19851:588..1196- (Phaeothamnion wetherbeei SAG_119_79)
CGGGGGAAGAAGGACGTGTCACGCTTCGTGAACGCCGACCCTAAGGAGTT
TATCACGGGCACGGTGGCCTCCATCCTGCCGTACGGCGCCTTCGTCAATA
TCGGCGAGGGGATTGACGGCCTTGTGCACATCTCGCAGATCGCGGAAGGC
CGCGTGAGCAGCGTGGAGGACGTGCTGCGGGTGGGGGATGAGGTGCAGGT
GCGCGTCGTGGTGGCCGATGCCGACTCGGGCACCGTCAACCTCTCCATGC
TCGAGCCGCGCGAGGGCGGTGGCGGCGGCGACTTCGACGACTGGAACGAC
GAGAGCGGCGGCGGCGGCGGCGGCCGGAAGCGGGAAAAGAAGGCGCGGTT
TGACAACCTCGACTACGACACGGGCAGCAGCGGGAGCGGGGCGGCCGCCG
ATGGGGACTGGCAGAAGTACCTCAACGAT
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