mRNA_P-wetherbeei_contig19814.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19814.1.1
Unique NamemRNA_P-wetherbeei_contig19814.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19814.1.1 vs. uniprot
Match: B7FV33_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FV33_PHATC)

HSP 1 Score: 62.0 bits (149), Expect = 5.710e-10
Identity = 30/44 (68.18%), Postives = 36/44 (81.82%), Query Frame = 1 
Query:    1 LEGKLPESLNGALAPFQKVGVAFVLEKDGRAMIADEMGLGKTIQ 132
            +E  +P  L  ALAPFQ+ GV FVLEKDGRA+IAD+MGLGKT+Q
Sbjct:  432 IEDGVPRGLAKALAPFQRGGVDFVLEKDGRALIADDMGLGKTMQ 475
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BLAST of mRNA_P-wetherbeei_contig19814.1.1 vs. uniprot
Match: UPI001B3528D4 (DNA annealing helicase and endonuclease ZRANB3 isoform X2 n=4 Tax=Ochotona TaxID=9977 RepID=UPI001B3528D4)

HSP 1 Score: 61.6 bits (148), Expect = 7.810e-10
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   13 LPESLNGALAPFQKVGVAFVLEKDGRAMIADEMGLGKTIQ 132
            LPE L   L PFQK G+ F LE+DGR M+ADEMGLGKTIQ
Sbjct:   29 LPEKLRAKLLPFQKDGITFALERDGRCMVADEMGLGKTIQ 68
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BLAST of mRNA_P-wetherbeei_contig19814.1.1 vs. uniprot
Match: UPI001B7E9726 (DNA annealing helicase and endonuclease ZRANB3 isoform X1 n=3 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7E9726)

HSP 1 Score: 60.8 bits (146), Expect = 1.460e-9
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   13 LPESLNGALAPFQKVGVAFVLEKDGRAMIADEMGLGKTIQ 132
            LPE LN  L PFQK G+ F +E++GR MIADEMGLGKTIQ
Sbjct:   38 LPEKLNQRLLPFQKEGIKFAIERNGRCMIADEMGLGKTIQ 77
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BLAST of mRNA_P-wetherbeei_contig19814.1.1 vs. uniprot
Match: A0A7S3P599_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P599_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.460e-9
Identity = 30/44 (68.18%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:    1 LEGKLPESLNGALAPFQKVGVAFVLEKDGRAMIADEMGLGKTIQ 132
            +E  +P  L  ALAPFQ+ GV FV EKDGRA+IAD+MGLGKTIQ
Sbjct:  421 IEMGVPAKLANALAPFQRGGVDFVCEKDGRALIADDMGLGKTIQ 464
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BLAST of mRNA_P-wetherbeei_contig19814.1.1 vs. uniprot
Match: UPI0014039341 (DNA annealing helicase and endonuclease ZRANB3 isoform X1 n=2 Tax=Amblyraja radiata TaxID=386614 RepID=UPI0014039341)

HSP 1 Score: 60.5 bits (145), Expect = 2.000e-9
Identity = 28/40 (70.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:   13 LPESLNGALAPFQKVGVAFVLEKDGRAMIADEMGLGKTIQ 132
            LPE LN  L PFQK G+ F +E++GR MIADEMGLGKTIQ
Sbjct:   32 LPERLNQKLLPFQKEGIRFAIERNGRCMIADEMGLGKTIQ 71
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BLAST of mRNA_P-wetherbeei_contig19814.1.1 vs. uniprot
Match: A0A6J0SNF0_9SAUR (DNA annealing helicase and endonuclease ZRANB3 isoform X1 n=2 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0SNF0_9SAUR)

HSP 1 Score: 59.7 bits (143), Expect = 3.730e-9
Identity = 29/40 (72.50%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   13 LPESLNGALAPFQKVGVAFVLEKDGRAMIADEMGLGKTIQ 132
            LPE L   L PFQK GV F LE++GR MIADEMGLGKTIQ
Sbjct:   32 LPERLKRRLLPFQKKGVLFALEREGRCMIADEMGLGKTIQ 71
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BLAST of mRNA_P-wetherbeei_contig19814.1.1 vs. uniprot
Match: UPI001C8A9299 (DNA annealing helicase and endonuclease ZRANB3 isoform X1 n=3 Tax=Puntigrus tetrazona TaxID=1606681 RepID=UPI001C8A9299)

HSP 1 Score: 59.3 bits (142), Expect = 5.100e-9
Identity = 28/40 (70.00%), Postives = 31/40 (77.50%), Query Frame = 1 
Query:   13 LPESLNGALAPFQKVGVAFVLEKDGRAMIADEMGLGKTIQ 132
            LP+ L   L PFQ+ GV F LE+DGR MIADEMGLGKTIQ
Sbjct:   42 LPQKLGEKLMPFQREGVLFALERDGRCMIADEMGLGKTIQ 81
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BLAST of mRNA_P-wetherbeei_contig19814.1.1 vs. uniprot
Match: A0A448Z7B3_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z7B3_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.100e-9
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   13 LPESLNGALAPFQKVGVAFVLEKDGRAMIADEMGLGKTIQ 132
            +P  L  ALAPFQ+ GV FV+EK+GRA+IAD+MGLGKTIQ
Sbjct:  452 VPRGLATALAPFQRGGVEFVVEKEGRALIADDMGLGKTIQ 491
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BLAST of mRNA_P-wetherbeei_contig19814.1.1 vs. uniprot
Match: UPI002026F73C (DNA annealing helicase and endonuclease ZRANB3 n=1 Tax=Sphaerodactylus townsendi TaxID=933632 RepID=UPI002026F73C)

HSP 1 Score: 58.9 bits (141), Expect = 6.980e-9
Identity = 28/40 (70.00%), Postives = 30/40 (75.00%), Query Frame = 1 
Query:   13 LPESLNGALAPFQKVGVAFVLEKDGRAMIADEMGLGKTIQ 132
            LP  L   L PFQK G+ F LEK+GR MIADEMGLGKTIQ
Sbjct:   27 LPRKLKERLLPFQKKGITFALEKNGRCMIADEMGLGKTIQ 66
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BLAST of mRNA_P-wetherbeei_contig19814.1.1 vs. uniprot
Match: A0A7S4JS25_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JS25_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.170e-9
Identity = 27/40 (67.50%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:   13 LPESLNGALAPFQKVGVAFVLEKDGRAMIADEMGLGKTIQ 132
            +P  L  ALAP+Q+ GV FVL++DGRA+IADEMGLGKT+Q
Sbjct:  197 VPTGLAEALAPYQRGGVDFVLDRDGRALIADEMGLGKTVQ 236
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19814.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
B7FV33_PHATC5.710e-1068.18Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
UPI001B3528D47.810e-1070.00DNA annealing helicase and endonuclease ZRANB3 iso... [more]
UPI001B7E97261.460e-970.00DNA annealing helicase and endonuclease ZRANB3 iso... [more]
A0A7S3P599_9STRA1.460e-968.18Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
UPI00140393412.000e-970.00DNA annealing helicase and endonuclease ZRANB3 iso... [more]
A0A6J0SNF0_9SAUR3.730e-972.50DNA annealing helicase and endonuclease ZRANB3 iso... [more]
UPI001C8A92995.100e-970.00DNA annealing helicase and endonuclease ZRANB3 iso... [more]
A0A448Z7B3_9STRA5.100e-970.00Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
UPI002026F73C6.980e-970.00DNA annealing helicase and endonuclease ZRANB3 n=1... [more]
A0A7S4JS25_9STRA9.170e-967.50Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19814contigP-wetherbeei_contig19814:915..1058 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LMH0
PFAMsHelicase_C,SNF2_N
Model size144
Max annot lvl2759|Eukaryota
KEGG koko:K14440
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.01e-11
EggNOG OGsCOG0553@1|root,KOG1000@2759|Eukaryota
EC3.6.4.12
Descriptionannealing helicase activity
Cds size144
COG categoryL
BRITEko00000,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186182.3340693-CDS-P-wetherbeei_contig19814:914..10581683186182.3340693-CDS-P-wetherbeei_contig19814:914..1058Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19814 915..1058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19814.1.1prot_P-wetherbeei_contig19814.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19814 915..1058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19814.1.1

>prot_P-wetherbeei_contig19814.1.1 ID=prot_P-wetherbeei_contig19814.1.1|Name=mRNA_P-wetherbeei_contig19814.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=48bp
LEGKLPESLNGALAPFQKVGVAFVLEKDGRAMIADEMGLGKTIQVSG*
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mRNA from alignment at P-wetherbeei_contig19814:915..1058+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19814.1.1 ID=mRNA_P-wetherbeei_contig19814.1.1|Name=mRNA_P-wetherbeei_contig19814.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig19814:915..1058+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGAGGGGAAGCTGCCGGAGTCGCTGAACGGGGCGCTGGCGCCGTTCCA
GAAGGTCGGCGTCGCGTTCGTGCTCGAGAAGGACGGCCGCGCCATGATCG
CTGACGAGATGGGCCTCGGAAAGACGATTCAGGTGAGCGGCTAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19814:915..1058+

>mRNA_P-wetherbeei_contig19814.1.1 ID=mRNA_P-wetherbeei_contig19814.1.1|Name=mRNA_P-wetherbeei_contig19814.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=144bp|location=Sequence derived from alignment at P-wetherbeei_contig19814:915..1058+ (Phaeothamnion wetherbeei SAG_119_79)
CTGGAGGGGAAGCTGCCGGAGTCGCTGAACGGGGCGCTGGCGCCGTTCCA
GAAGGTCGGCGTCGCGTTCGTGCTCGAGAAGGACGGCCGCGCCATGATCG
CTGACGAGATGGGCCTCGGAAAGACGATTCAGGTGAGCGGCTAA
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