mRNA_P-wetherbeei_contig1978.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1978.4.1
Unique NamemRNA_P-wetherbeei_contig1978.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1978.4.1 vs. uniprot
Match: A0A7S2UTV2_9STRA (Nucleolar protein 16 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTV2_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.310e-33
Identity = 78/164 (47.56%), Postives = 100/164 (60.98%), Query Frame = 1 
Query:    1 MRPAAKKRRRGVAKVKAPQKNHRKFIKPNISDERIRELWDNKKSQRENGKSMGILLESKNAFPAQASLG--DEEVDSSAHP-VFGVPNSDRLRDVDRNPRRRPMSEADQQYAAAQLAKHGEDHAAMARDIKTNYMQLPRDRLARLCALFLGLKAEDRMVPVPAA 483
            +R AAKKRRRG AKV   QKN  ++IKP ISD +IR  WD K S  +N   +G++ +  N F  Q +    D   D S +P +F +P SD L  VD N RRR MSE +Q+Y A  +AK+GED+  MA D+K NY+Q    +L RLC  FL L    R+VPVP A
Sbjct:    2 VRIAAKKRRRGTAKVSQKQKNKSRYIKPKISDSKIRASWDPKVSIGKNVTRLGLVTDP-NTFLEQCNAPKMDTSTDKSNYPRLFDIPCSDDLTKVDANARRRVMSEEEQKYLANLIAKYGEDYKGMAHDVKKNYLQYAVGKLRRLCTRFLLLDENQRLVPVPEA 164
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BLAST of mRNA_P-wetherbeei_contig1978.4.1 vs. uniprot
Match: A0A7R9UCV7_9STRA (Nucleolar protein 16 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCV7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.920e-22
Identity = 64/158 (40.51%), Postives = 94/158 (59.49%), Query Frame = 1 
Query:   13 AKKRRRGVAKVKAPQKNHRKFIKPNISDERIRELWDNKKSQRENGKSMGILLESKNAFPAQASL-GDEEVDSSAHPVF--GVPNSDRLRDVDRNPRRRPMSEADQQYAAAQLAKHGEDHAAMARDIKTNYMQLPRDRLARLCALFLGLKAEDRMVPVP 477
            +KKRR G  +V   +KN  K ++P ++D  ++++WD K    EN K +G+       F  +++  G + V  +   V    +P SD L DVDRNPRRRPMSE DQ+Y A Q+ KHG+D+ AM  DI TN MQ    +L ++ + FL L+   R++PVP
Sbjct:   11 SKKRRSGRQRVS--RKN--KIVRPVVTDRSLKKVWDEKLPPAENLKRVGLNFNVNGEFGRKSTKKGPKLVAETLQEVTFAEIPASDSL-DVDRNPRRRPMSEEDQRYIAKQMKKHGKDYKAMFMDIDTNVMQYTEAKLRKMASRFLLLEGAQRLIPVP 163
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BLAST of mRNA_P-wetherbeei_contig1978.4.1 vs. uniprot
Match: A0A1V9ZUL6_9STRA (Nucleolar protein 16 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUL6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.910e-9
Identity = 48/138 (34.78%), Postives = 75/138 (54.35%), Query Frame = 1 
Query:   28 RGVAKVKAPQKNHRKFIKPNISDERIRELWDNKKSQRENGKSMGILLESKNAFPAQASLGDEEVDSSAHPVFGVPNSDRLR-DVDRNPRRRP--MSEADQQYAAAQLAKHGEDHAAMARDIKTNYMQLPRDRLARLCA 432
            +G  KV    K  RK+    + D  I+++WD+K + ++N + +G L  + N+     S  ++ VD     +F VP+SD L  + +RN ++    MSE +  Y    +AK+G+DH AMARDIK N  Q    +L R CA
Sbjct:   10 KGKVKVSRKSKPIRKYKTKFVGDAEIKKVWDHKLTTKQNYEKIG-LCRNPNSLEQIRSCTEDLVDPEE--LFDVPDSDILNLNNERNLKKADNHMSENEIAYLRPLVAKYGDDHLAMARDIKINNEQWTEAKLKRRCA 144
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BLAST of mRNA_P-wetherbeei_contig1978.4.1 vs. uniprot
Match: A0A7S2BGE9_9STRA (Nucleolar protein 16 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BGE9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.990e-9
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 1 
Query:  190 AQASLGDEEVDSSAHPVFGVPNSDRLRDVDRNPRRR--PMSEADQQYAAAQLAKHGEDHAAMARDIKTNYMQLPRDRLARLCA 432
            A+A+    EVD  A+ +F +P SD LR VD N RRR  PM E D +Y    + KHG+D+  MARDIK N  QL    L ++ A
Sbjct:   14 AKAAAIAAEVD--ANELFEIPESDDLRSVDANSRRRKQPMMEKDVKYIEKLVGKHGDDYTTMARDIKLNVRQLTAKNLEKMAA 94
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BLAST of mRNA_P-wetherbeei_contig1978.4.1 vs. uniprot
Match: A0A1Z5JKR3_FISSO (Nucleolar protein 16 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKR3_FISSO)

HSP 1 Score: 52.8 bits (125), Expect = 1.820e-5
Identity = 36/132 (27.27%), Postives = 69/132 (52.27%), Query Frame = 1 
Query:   82 PNISDERIRELWDNKKSQRENGKSMGILLESKNAFPAQASLGDEEVDSSAHPVFGVPNSDRLRDVDRNPRRRPMSEADQQYAAAQLAKHGEDHAAMARDIKTNYMQLPRDRLARLCALFLGLKAEDRMVPVP 477
            P ++ E ++E W+   S   N +++G++ +  +        G  ++      +F +P+SD      ++    P+ + +++Y    +AKHG+D+AAM RDI+ N +Q    +L +L A +L L  E R + VP
Sbjct:   32 PKVAKE-LKEKWNASLSPAANLQALGLVAKPNHQQGQTKPTGAPDIIE----LFDIPDSDAPSFRQKH----PLDKDEEEYIQKCMAKHGDDYAAMFRDIRVNTLQHTEQKLRKLGARYLLLTPEQRRLKVP 154
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1978.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S2UTV2_9STRA4.310e-3347.56Nucleolar protein 16 n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9UCV7_9STRA1.920e-2240.51Nucleolar protein 16 n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1V9ZUL6_9STRA1.910e-934.78Nucleolar protein 16 n=1 Tax=Achlya hypogyna TaxID... [more]
A0A7S2BGE9_9STRA2.990e-945.78Nucleolar protein 16 n=1 Tax=Florenciella parvula ... [more]
A0A1Z5JKR3_FISSO1.820e-527.27Nucleolar protein 16 n=2 Tax=Fistulifera solaris T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1978contigP-wetherbeei_contig1978:4130..4856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog36331.EPrPI00000019449
PFAMsNop16
Model size516
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons2
Evalue4.22e-17
EggNOG OGs2ANIR@1|root,2RZEH@2759|Eukaryota,1MGSZ@121069|Pythiales
Ec32 ortholog descriptionRibosome biogenesis protein Nop16
Ec32 orthologEc-21_003630.1
DescriptionSource PGD
Cds size516
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186181.1985931-CDS-P-wetherbeei_contig1978:4129..44011683186181.1985931-CDS-P-wetherbeei_contig1978:4129..4401Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1978 4130..4401 -
1683186181.218023-CDS-P-wetherbeei_contig1978:4612..48561683186181.218023-CDS-P-wetherbeei_contig1978:4612..4856Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1978 4613..4856 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1978.4.1prot_P-wetherbeei_contig1978.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1978 4130..4856 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1978.4.1

>prot_P-wetherbeei_contig1978.4.1 ID=prot_P-wetherbeei_contig1978.4.1|Name=mRNA_P-wetherbeei_contig1978.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
MRPAAKKRRRGVAKVKAPQKNHRKFIKPNISDERIRELWDNKKSQRENGK
SMGILLESKNAFPAQASLGDEEVDSSAHPVFGVPNSDRLRDVDRNPRRRP
MSEADQQYAAAQLAKHGEDHAAMARDIKTNYMQLPRDRLARLCALFLGLK
AEDRMVPVPAASAAAKGAAPV*
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mRNA from alignment at P-wetherbeei_contig1978:4130..4856-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1978.4.1 ID=mRNA_P-wetherbeei_contig1978.4.1|Name=mRNA_P-wetherbeei_contig1978.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=727bp|location=Sequence derived from alignment at P-wetherbeei_contig1978:4130..4856- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCCAGCCGCTAAAAAACGTAGGAGGGGAGTCGCAAAGGTGAAGGC
ACCGCAAAAGAACCACAGAAAATTTATCAAGCCAAATATATCGGATGAAC
GAATCCGCGAGCTCTGGGATAACAAGAAATCGCAACGAGAGAACGGAAAG
TCGATGGGAATCCTCCTGGAGTCCAAGAACGCTTTTCCTGCACAGGCTTC
ATTAGGGGATGAAGAGGTCGACAGCTCTGCGCACCCCGTATTTGGTAACT
CTGGGCCCTATTTACTGCTTCCCTTTCCACGTCGCTCCGGATCCACCACC
TGCTTCTGTTTGTTCTTGAATTCGTTCTTACACCTCCCCCCAGGCTCCCA
GTTAACTCCTCTTTTGAACAGAAAACCCCACCCAATCGACAGCTTATCCC
TTCCTCCCTCCCGCTTTCTCTTTTCTCCGCCGCCGTCTGCACGACACGTG
TGCAGGGGTGCCGAACAGCGACCGCCTGCGCGACGTCGACCGCAACCCGC
GGCGGCGGCCCATGTCCGAGGCGGACCAGCAGTACGCCGCCGCGCAGCTC
GCCAAGCACGGCGAAGATCACGCCGCCATGGCGCGCGACATCAAGACCAA
TTACATGCAGCTGCCGCGGGACCGCCTGGCGCGGCTCTGCGCGCTGTTTC
TCGGGCTGAAGGCGGAGGATCGGATGGTGCCCGTTCCCGCGGCGTCGGCG
GCGGCAAAAGGAGCAGCACCGGTGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1978:4130..4856-

>mRNA_P-wetherbeei_contig1978.4.1 ID=mRNA_P-wetherbeei_contig1978.4.1|Name=mRNA_P-wetherbeei_contig1978.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig1978:4130..4856- (Phaeothamnion wetherbeei SAG_119_79)
ATGCGCCCAGCCGCTAAAAAACGTAGGAGGGGAGTCGCAAAGGTGAAGGC
ACCGCAAAAGAACCACAGAAAATTTATCAAGCCAAATATATCGGATGAAC
GAATCCGCGAGCTCTGGGATAACAAGAAATCGCAACGAGAGAACGGAAAG
TCGATGGGAATCCTCCTGGAGTCCAAGAACGCTTTTCCTGCACAGGCTTC
ATTAGGGGATGAAGAGGTCGACAGCTCTGCGCACCCCGTATTTGGGGTGC
CGAACAGCGACCGCCTGCGCGACGTCGACCGCAACCCGCGGCGGCGGCCC
ATGTCCGAGGCGGACCAGCAGTACGCCGCCGCGCAGCTCGCCAAGCACGG
CGAAGATCACGCCGCCATGGCGCGCGACATCAAGACCAATTACATGCAGC
TGCCGCGGGACCGCCTGGCGCGGCTCTGCGCGCTGTTTCTCGGGCTGAAG
GCGGAGGATCGGATGGTGCCCGTTCCCGCGGCGTCGGCGGCGGCAAAAGG
AGCAGCACCGGTGTGA
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