prot_P-wetherbeei_contig1978.4.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig1978.4.1
Unique Nameprot_P-wetherbeei_contig1978.4.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length172
Homology
BLAST of mRNA_P-wetherbeei_contig1978.4.1 vs. uniprot
Match: A0A7S2UTV2_9STRA (Nucleolar protein 16 n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTV2_9STRA)

HSP 1 Score: 124 bits (312), Expect = 4.310e-33
Identity = 78/164 (47.56%), Postives = 100/164 (60.98%), Query Frame = 0
Query:    1 MRPAAKKRRRGVAKVKAPQKNHRKFIKPNISDERIRELWDNKKSQRENGKSMGILLESKNAFPAQASLG--DEEVDSSAHP-VFGVPNSDRLRDVDRNPRRRPMSEADQQYAAAQLAKHGEDHAAMARDIKTNYMQLPRDRLARLCALFLGLKAEDRMVPVPAA 161
            +R AAKKRRRG AKV   QKN  ++IKP ISD +IR  WD K S  +N   +G++ +  N F  Q +    D   D S +P +F +P SD L  VD N RRR MSE +Q+Y A  +AK+GED+  MA D+K NY+Q    +L RLC  FL L    R+VPVP A
Sbjct:    2 VRIAAKKRRRGTAKVSQKQKNKSRYIKPKISDSKIRASWDPKVSIGKNVTRLGLVTDP-NTFLEQCNAPKMDTSTDKSNYPRLFDIPCSDDLTKVDANARRRVMSEEEQKYLANLIAKYGEDYKGMAHDVKKNYLQYAVGKLRRLCTRFLLLDENQRLVPVPEA 164          
BLAST of mRNA_P-wetherbeei_contig1978.4.1 vs. uniprot
Match: A0A7R9UCV7_9STRA (Nucleolar protein 16 n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCV7_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 1.920e-22
Identity = 64/158 (40.51%), Postives = 94/158 (59.49%), Query Frame = 0
Query:    5 AKKRRRGVAKVKAPQKNHRKFIKPNISDERIRELWDNKKSQRENGKSMGILLESKNAFPAQASL-GDEEVDSSAHPVF--GVPNSDRLRDVDRNPRRRPMSEADQQYAAAQLAKHGEDHAAMARDIKTNYMQLPRDRLARLCALFLGLKAEDRMVPVP 159
            +KKRR G  +V   +KN  K ++P ++D  ++++WD K    EN K +G+       F  +++  G + V  +   V    +P SD L DVDRNPRRRPMSE DQ+Y A Q+ KHG+D+ AM  DI TN MQ    +L ++ + FL L+   R++PVP
Sbjct:   11 SKKRRSGRQRVS--RKN--KIVRPVVTDRSLKKVWDEKLPPAENLKRVGLNFNVNGEFGRKSTKKGPKLVAETLQEVTFAEIPASDSL-DVDRNPRRRPMSEEDQRYIAKQMKKHGKDYKAMFMDIDTNVMQYTEAKLRKMASRFLLLEGAQRLIPVP 163          
BLAST of mRNA_P-wetherbeei_contig1978.4.1 vs. uniprot
Match: A0A1V9ZUL6_9STRA (Nucleolar protein 16 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZUL6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.910e-9
Identity = 48/138 (34.78%), Postives = 75/138 (54.35%), Query Frame = 0
Query:   10 RGVAKVKAPQKNHRKFIKPNISDERIRELWDNKKSQRENGKSMGILLESKNAFPAQASLGDEEVDSSAHPVFGVPNSDRLR-DVDRNPRRRP--MSEADQQYAAAQLAKHGEDHAAMARDIKTNYMQLPRDRLARLCA 144
            +G  KV    K  RK+    + D  I+++WD+K + ++N + +G L  + N+     S  ++ VD     +F VP+SD L  + +RN ++    MSE +  Y    +AK+G+DH AMARDIK N  Q    +L R CA
Sbjct:   10 KGKVKVSRKSKPIRKYKTKFVGDAEIKKVWDHKLTTKQNYEKIG-LCRNPNSLEQIRSCTEDLVDPEE--LFDVPDSDILNLNNERNLKKADNHMSENEIAYLRPLVAKYGDDHLAMARDIKINNEQWTEAKLKRRCA 144          
BLAST of mRNA_P-wetherbeei_contig1978.4.1 vs. uniprot
Match: A0A7S2BGE9_9STRA (Nucleolar protein 16 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BGE9_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 2.990e-9
Identity = 38/83 (45.78%), Postives = 49/83 (59.04%), Query Frame = 0
Query:   64 AQASLGDEEVDSSAHPVFGVPNSDRLRDVDRNPRRR--PMSEADQQYAAAQLAKHGEDHAAMARDIKTNYMQLPRDRLARLCA 144
            A+A+    EVD  A+ +F +P SD LR VD N RRR  PM E D +Y    + KHG+D+  MARDIK N  QL    L ++ A
Sbjct:   14 AKAAAIAAEVD--ANELFEIPESDDLRSVDANSRRRKQPMMEKDVKYIEKLVGKHGDDYTTMARDIKLNVRQLTAKNLEKMAA 94          
BLAST of mRNA_P-wetherbeei_contig1978.4.1 vs. uniprot
Match: A0A1Z5JKR3_FISSO (Nucleolar protein 16 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JKR3_FISSO)

HSP 1 Score: 52.8 bits (125), Expect = 1.820e-5
Identity = 36/132 (27.27%), Postives = 69/132 (52.27%), Query Frame = 0
Query:   28 PNISDERIRELWDNKKSQRENGKSMGILLESKNAFPAQASLGDEEVDSSAHPVFGVPNSDRLRDVDRNPRRRPMSEADQQYAAAQLAKHGEDHAAMARDIKTNYMQLPRDRLARLCALFLGLKAEDRMVPVP 159
            P ++ E ++E W+   S   N +++G++ +  +        G  ++      +F +P+SD      ++    P+ + +++Y    +AKHG+D+AAM RDI+ N +Q    +L +L A +L L  E R + VP
Sbjct:   32 PKVAKE-LKEKWNASLSPAANLQALGLVAKPNHQQGQTKPTGAPDIIE----LFDIPDSDAPSFRQKH----PLDKDEEEYIQKCMAKHGDDYAAMFRDIRVNTLQHTEQKLRKLGARYLLLTPEQRRLKVP 154          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1978.4.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7S2UTV2_9STRA4.310e-3347.56Nucleolar protein 16 n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9UCV7_9STRA1.920e-2240.51Nucleolar protein 16 n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A1V9ZUL6_9STRA1.910e-934.78Nucleolar protein 16 n=1 Tax=Achlya hypogyna TaxID... [more]
A0A7S2BGE9_9STRA2.990e-945.78Nucleolar protein 16 n=1 Tax=Florenciella parvula ... [more]
A0A1Z5JKR3_FISSO1.820e-527.27Nucleolar protein 16 n=2 Tax=Fistulifera solaris T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019002Ribosome biogenesis protein Nop16PFAMPF09420Nop16coord: 93..143
e-value: 9.1E-8
score: 32.4
IPR019002Ribosome biogenesis protein Nop16PANTHERPTHR13243HSPC111 PROTEIN-RELATEDcoord: 6..152
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 87..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1978contigP-wetherbeei_contig1978:4130..4856 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1978.4.1mRNA_P-wetherbeei_contig1978.4.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig1978 4130..4856 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig1978.4.1 ID=prot_P-wetherbeei_contig1978.4.1|Name=mRNA_P-wetherbeei_contig1978.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=172bp
MRPAAKKRRRGVAKVKAPQKNHRKFIKPNISDERIRELWDNKKSQRENGK
SMGILLESKNAFPAQASLGDEEVDSSAHPVFGVPNSDRLRDVDRNPRRRP
MSEADQQYAAAQLAKHGEDHAAMARDIKTNYMQLPRDRLARLCALFLGLK
AEDRMVPVPAASAAAKGAAPV*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019002Ribosome_biogenesis_Nop16