mRNA_P-wetherbeei_contig19777.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19777.2.1
Unique NamemRNA_P-wetherbeei_contig19777.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19777.2.1 vs. uniprot
Match: UPI001FFFF744 (polymorphic toxin-type HINT domain-containing protein n=1 Tax=Chitinophaga filiformis TaxID=104663 RepID=UPI001FFFF744)

HSP 1 Score: 87.8 bits (216), Expect = 1.810e-15
Identity = 82/324 (25.31%), Postives = 149/324 (45.99%), Query Frame = 1 
Query:    1 MRRIFYLILFLLGTLHARADDAYSEWKEKLIREGRKQIADVQQQNALNDAAGNSHRNNYVIIVST------NAEYPNGEFIHQEK--------GSGQASSYVLDA-VSLQSMDEKLRAVNA--GSTITSYLLIVNFVPLEFVDEIPDDMSIKNFFGSQDRNML-GDIGARARAEAAGIVDGMTNITIGEASKPS-------VYSGLVKFKVFKNKSAGIEQWVY--HHNSKQVEHTEQYRNILRNSVQTAKWPVTPDDYSNVPVMIEQIEKSNATYKSVSATLSSLLQINDPVIVTTLLKDLTPNGFASFTAEQRIHALKVLSS 891
            +R+   L + LL      A         K+I  GR  I ++ +QN LND  G S +N YV+ ++T        +  + ++I Q K        G   A  Y++ A   L  +D+ L+  N   G+ + +YL+ ++F+P+ F +  PD  ++ N++ ++      G I   AR +AA IV G+    + E ++ S       V  G+V +K++  +       ++  + + K  E  E Y  +L   + + +    P     +   I  I ++N  YK +      ++ + D   +  LL  L+ + +  FT E+R+HA+KVLSS
Sbjct:    4 LRKYILLFILLLPAAAGFATPDRDSLVMKVIERGRVAIREMARQNKLNDEKGLSSQNRYVLHINTADLIDKKIDALDKDYIKQRKITYSTDDVGGNAAGEYLVPAGEDLDDLDDDLKEYNLKPGTQVRAYLITIDFIPMIFNNPPPDMGTLMNYYHNEAIGTENGTITETARDDAAAIVKGIAAGLLNEQAEGSAAPAFNTVCCGMVNYKIYNKRDVLKTLRIFSPYCDLKGAE-LESYNLLLGKHLMSVRGNTGP---KMIEAFIRAIIRNNTDYKVLPYVKERIMSVTDSDTMGLLLSGLSEHAYDQFTYEERMHAIKVLSS 323
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19777.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001FFFF7441.810e-1525.31polymorphic toxin-type HINT domain-containing prot... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19777contigP-wetherbeei_contig19777:309..1247 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size939
Hectar predicted targeting categorysignal peptide
Exons1
Cds size939
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186181.1381602-CDS-P-wetherbeei_contig19777:308..12471683186181.1381602-CDS-P-wetherbeei_contig19777:308..1247Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19777 309..1247 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19777.2.1prot_P-wetherbeei_contig19777.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19777 309..1247 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19777.2.1

>prot_P-wetherbeei_contig19777.2.1 ID=prot_P-wetherbeei_contig19777.2.1|Name=mRNA_P-wetherbeei_contig19777.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=313bp
MRRIFYLILFLLGTLHARADDAYSEWKEKLIREGRKQIADVQQQNALNDA
AGNSHRNNYVIIVSTNAEYPNGEFIHQEKGSGQASSYVLDAVSLQSMDEK
LRAVNAGSTITSYLLIVNFVPLEFVDEIPDDMSIKNFFGSQDRNMLGDIG
ARARAEAAGIVDGMTNITIGEASKPSVYSGLVKFKVFKNKSAGIEQWVYH
HNSKQVEHTEQYRNILRNSVQTAKWPVTPDDYSNVPVMIEQIEKSNATYK
SVSATLSSLLQINDPVIVTTLLKDLTPNGFASFTAEQRIHALKVLSSLSI
PDDRELIIVKLIE
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mRNA from alignment at P-wetherbeei_contig19777:309..1247+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19777.2.1 ID=mRNA_P-wetherbeei_contig19777.2.1|Name=mRNA_P-wetherbeei_contig19777.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=939bp|location=Sequence derived from alignment at P-wetherbeei_contig19777:309..1247+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTAGAATATTTTACCTCATCCTTTTTTTATTGGGCACGCTCCATGC
CCGGGCAGATGATGCTTATTCGGAATGGAAAGAAAAGCTAATCCGGGAAG
GGCGTAAGCAGATCGCAGACGTGCAGCAACAAAATGCATTGAATGATGCC
GCAGGCAATTCTCATCGTAACAACTATGTAATTATTGTTTCTACGAATGC
CGAATATCCTAATGGAGAATTTATTCACCAGGAGAAAGGATCGGGGCAGG
CGAGCAGTTACGTTCTTGATGCGGTCAGTCTTCAGTCAATGGATGAAAAG
CTGCGCGCGGTCAATGCGGGCAGTACCATAACCAGCTATTTGCTGATTGT
AAACTTCGTACCACTGGAATTTGTAGACGAAATCCCGGACGATATGTCCA
TTAAGAATTTTTTTGGAAGCCAGGACCGGAACATGCTCGGAGATATTGGT
GCCCGGGCCAGGGCAGAAGCAGCAGGCATTGTTGATGGCATGACCAACAT
AACAATTGGTGAAGCATCAAAACCAAGTGTGTACAGTGGACTGGTCAAAT
TCAAAGTATTCAAAAATAAGAGCGCAGGAATTGAGCAGTGGGTTTATCAC
CATAACAGCAAGCAGGTAGAGCATACAGAACAATACCGGAACATTCTCAG
GAATTCTGTTCAAACCGCAAAATGGCCGGTCACACCGGATGATTATAGTA
ATGTGCCGGTGATGATTGAACAAATAGAAAAAAGTAATGCTACGTATAAA
AGTGTTTCAGCCACCTTATCCTCATTACTGCAGATTAATGACCCGGTTAT
CGTGACTACCCTGCTGAAAGACCTGACCCCGAACGGGTTTGCATCTTTTA
CGGCTGAACAGCGAATCCATGCTTTGAAGGTACTTTCCTCTCTGTCTATA
CCGGATGATCGTGAATTAATTATCGTAAAACTGATCGAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19777:309..1247+

>mRNA_P-wetherbeei_contig19777.2.1 ID=mRNA_P-wetherbeei_contig19777.2.1|Name=mRNA_P-wetherbeei_contig19777.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=939bp|location=Sequence derived from alignment at P-wetherbeei_contig19777:309..1247+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCGTAGAATATTTTACCTCATCCTTTTTTTATTGGGCACGCTCCATGC
CCGGGCAGATGATGCTTATTCGGAATGGAAAGAAAAGCTAATCCGGGAAG
GGCGTAAGCAGATCGCAGACGTGCAGCAACAAAATGCATTGAATGATGCC
GCAGGCAATTCTCATCGTAACAACTATGTAATTATTGTTTCTACGAATGC
CGAATATCCTAATGGAGAATTTATTCACCAGGAGAAAGGATCGGGGCAGG
CGAGCAGTTACGTTCTTGATGCGGTCAGTCTTCAGTCAATGGATGAAAAG
CTGCGCGCGGTCAATGCGGGCAGTACCATAACCAGCTATTTGCTGATTGT
AAACTTCGTACCACTGGAATTTGTAGACGAAATCCCGGACGATATGTCCA
TTAAGAATTTTTTTGGAAGCCAGGACCGGAACATGCTCGGAGATATTGGT
GCCCGGGCCAGGGCAGAAGCAGCAGGCATTGTTGATGGCATGACCAACAT
AACAATTGGTGAAGCATCAAAACCAAGTGTGTACAGTGGACTGGTCAAAT
TCAAAGTATTCAAAAATAAGAGCGCAGGAATTGAGCAGTGGGTTTATCAC
CATAACAGCAAGCAGGTAGAGCATACAGAACAATACCGGAACATTCTCAG
GAATTCTGTTCAAACCGCAAAATGGCCGGTCACACCGGATGATTATAGTA
ATGTGCCGGTGATGATTGAACAAATAGAAAAAAGTAATGCTACGTATAAA
AGTGTTTCAGCCACCTTATCCTCATTACTGCAGATTAATGACCCGGTTAT
CGTGACTACCCTGCTGAAAGACCTGACCCCGAACGGGTTTGCATCTTTTA
CGGCTGAACAGCGAATCCATGCTTTGAAGGTACTTTCCTCTCTGTCTATA
CCGGATGATCGTGAATTAATTATCGTAAAACTGATCGAG
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