mRNA_P-wetherbeei_contig1977.4.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1977.4.1
Unique NamemRNA_P-wetherbeei_contig1977.4.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1977.4.1 vs. uniprot
Match: UPI001E1AFE79 (cystatin-B-like n=3 Tax=Jaculus jaculus TaxID=51337 RepID=UPI001E1AFE79)

HSP 1 Score: 82.0 bits (201), Expect = 1.080e-15
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  122 MIGGYSDAGPADEDVDAVLRSVRHAAEAEAKRDLSPFRAVSSRRQVVAGTNFLINVDVGKGEYAHLTVFRPLPHTNEPPQLKGMELCKAEGDHL 403
            M GG+SD  PA  ++  +   V+   E +  R  S F+AVS R QVVAG+ + I VDVG GE+ H+TV  PLPH N+P  L   +  K + D L
Sbjct:    2 MYGGFSDTKPATAEIQEIADKVKSQLEQKENRKFSVFKAVSYRSQVVAGSIYYIKVDVGDGEFIHMTVLEPLPHENKPLSLLSYQTKKTQDDEL 95          
BLAST of mRNA_P-wetherbeei_contig1977.4.1 vs. uniprot
Match: A0A8D0C4Z2_9SAUR (Cystatin domain-containing protein n=1 Tax=Salvator merianae TaxID=96440 RepID=A0A8D0C4Z2_9SAUR)

HSP 1 Score: 81.3 bits (199), Expect = 2.170e-15
Identity = 43/95 (45.26%), Postives = 52/95 (54.74%), Query Frame = 2
Query:  122 MIGGYSDAGPADEDVDAVLRSVRHAAEAEAKRDLSP-FRAVSSRRQVVAGTNFLINVDVGKGEYAHLTVFRPLPHTNEPPQLKGMELCKAEGDHL 403
            M GG SD  PA  D+  +   V        +    P FRAV  + QVVAGTN+ I VD+G+G Y HL +F PLPHTNE P L   +  K E D L
Sbjct:    2 MTGGLSDVQPATPDIQKLADQVSEDFNENKENQSYPIFRAVDYKTQVVAGTNYFIKVDIGQGNYIHLRIFLPLPHTNEGPSLTSFQTGKVESDPL 96          
BLAST of mRNA_P-wetherbeei_contig1977.4.1 vs. uniprot
Match: UPI0014864846 (cystatin-B n=4 Tax=Murinae TaxID=39107 RepID=UPI0014864846)

HSP 1 Score: 78.2 bits (191), Expect = 2.670e-14
Identity = 41/94 (43.62%), Postives = 54/94 (57.45%), Query Frame = 2
Query:  122 MIGGYSDAGPADEDVDAVLRSVRHAAEAEAKRDLSPFRAVSSRRQVVAGTNFLINVDVGKGEYAHLTVFRPLPHTNEPPQLKGMELCKAEGDHL 403
            M GG S   PA  +   +   V+   E +  +    F+AVS +RQVVAGTNF I VDVG+ +Y HL VF+PLPH N+P  L   +  K + D L
Sbjct:    2 MCGGPSATMPATAETQEIADKVKSQLEEKENQKFGVFKAVSFKRQVVAGTNFFIKVDVGEDKYMHLRVFQPLPHENKPLSLTSYQTNKEKHDEL 95          
BLAST of mRNA_P-wetherbeei_contig1977.4.1 vs. uniprot
Match: UPI0020146011 (cystatin 14b, tandem duplicate 1 n=1 Tax=Megalobrama amblycephala TaxID=75352 RepID=UPI0020146011)

HSP 1 Score: 75.1 bits (183), Expect = 3.520e-13
Identity = 40/93 (43.01%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  125 IGGYSDAGPADEDVDAVLRSVRHAAEAEAKRDLSPFRAVSSRRQVVAGTNFLINVDVGKGEYAHLTVFRPLPHTNEPPQLKGMELCKAEGDHL 403
            +GG S+   A  +V  +   ++H AE +A R    F A S   QVVAGTN+ I VDVG G++ HL V +PLPHT E  QL G+++ K + D +
Sbjct:    5 VGGPSEVKQATAEVQMICDEIKHCAEEKAGRKFVVFTARSYITQVVAGTNYFIKVDVG-GDFVHLRVHKPLPHTGEKLQLHGIQISKCQQDPI 96          
BLAST of mRNA_P-wetherbeei_contig1977.4.1 vs. uniprot
Match: CYTB_RAT (Cystatin-B n=2 Tax=Rattus TaxID=10114 RepID=CYTB_RAT)

HSP 1 Score: 74.7 bits (182), Expect = 4.710e-13
Identity = 40/94 (42.55%), Postives = 52/94 (55.32%), Query Frame = 2
Query:  122 MIGGYSDAGPADEDVDAVLRSVRHAAEAEAKRDLSPFRAVSSRRQVVAGTNFLINVDVGKGEYAHLTVFRPLPHTNEPPQLKGMELCKAEGDHL 403
            M G  S   PA  +   +   V+   E +A +    F+A+S RRQVVAGTNF I VDVG+ +  HL VF PLPH N+P  L   +  K + D L
Sbjct:    2 MCGAPSATMPATTETQEIADKVKSQLEEKANQKFDVFKAISFRRQVVAGTNFFIKVDVGEEKCVHLRVFEPLPHENKPLTLSSYQTDKEKHDEL 95          
BLAST of mRNA_P-wetherbeei_contig1977.4.1 vs. uniprot
Match: UPI0002C655D2 (stefin-C-like n=1 Tax=Ceratotherium simum simum TaxID=73337 RepID=UPI0002C655D2)

HSP 1 Score: 74.3 bits (181), Expect = 6.470e-13
Identity = 37/94 (39.36%), Postives = 53/94 (56.38%), Query Frame = 2
Query:  122 MIGGYSDAGPADEDVDAVLRSVRHAAEAEAKRDLSPFRAVSSRRQVVAGTNFLINVDVGKGEYAHLTVFRPLPHTNEPPQLKGMELCKAEGDHL 403
            + GG+++  PA  ++ A+   V+   E + K+    F+AV  R QVVAGTN+LI V VG  +Y H+ VF+ LPH N P  L   +  K   D L
Sbjct:    2 VCGGFTNTQPAMPEIQAIADQVKPQLEEKEKKKFPIFKAVEFRSQVVAGTNYLIKVQVGDDDYVHIQVFKSLPHANRPLDLTRYQTNKTRNDKL 95          
BLAST of mRNA_P-wetherbeei_contig1977.4.1 vs. uniprot
Match: A0A6P6N0Q8_CARAU (cystatin-B-like n=1 Tax=Carassius auratus TaxID=7957 RepID=A0A6P6N0Q8_CARAU)

HSP 1 Score: 72.8 bits (177), Expect = 2.430e-12
Identity = 38/94 (40.43%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  122 MIGGYSDAGPADEDVDAVLRSVRHAAEAEAKRDLSPFRAVSSRRQVVAGTNFLINVDVGKGEYAHLTVFRPLPHTNEPPQLKGMELCKAEGDHL 403
            ++GG S    A  +V  +   V+H AE +A +  + F A S   QVVAGTN+ I V+VG+ E+ HL V +PLPH  E  QL G++  K++ D +
Sbjct:    4 LVGGPSVVKQATAEVQKICDEVKHHAEEKAGKKFAVFIAKSFTVQVVAGTNYFIKVNVGRDEFVHLKVHKPLPHAGEKLQLHGIQTSKSQHDPI 97          
BLAST of mRNA_P-wetherbeei_contig1977.4.1 vs. uniprot
Match: UPI000F4E714F (cystatin-B-like n=2 Tax=Tachysurus fulvidraco TaxID=1234273 RepID=UPI000F4E714F)

HSP 1 Score: 72.4 bits (176), Expect = 3.340e-12
Identity = 39/94 (41.49%), Postives = 56/94 (59.57%), Query Frame = 2
Query:  122 MIGGYSDAGPADEDVDAVLRSVRHAAEAEAKRDLSPFRAVSSRRQVVAGTNFLINVDVGKGEYAHLTVFRPLPHTNEPPQLKGMELCKAEGDHL 403
            + GG S+A  A+E+V  +   ++  AE +A R    F A S + QVVAGTNF I V VG  ++AHL V++ LPH  E  +L G++  KA  D +
Sbjct:    4 LCGGTSEAKEANEEVQKICDEMKSHAEEKAGRTFDVFTAKSYKTQVVAGTNFFIKVHVGGEDFAHLRVYKMLPHAGEKLELHGIQTPKAHHDPI 97          
BLAST of mRNA_P-wetherbeei_contig1977.4.1 vs. uniprot
Match: G3WKG0_SARHA (Cystatin A n=1 Tax=Sarcophilus harrisii TaxID=9305 RepID=G3WKG0_SARHA)

HSP 1 Score: 72.4 bits (176), Expect = 3.520e-12
Identity = 35/97 (36.08%), Postives = 56/97 (57.73%), Query Frame = 2
Query:  113 SVKMIGGYSDAGPADEDVDAVLRSVRHAAEAEAKRDLSPFRAVSSRRQVVAGTNFLINVDVGKGEYAHLTVFRPLPHTNEPPQLKGMELCKAEGDHL 403
            S  M GG S+A  A  ++  ++  ++   E +  +    F+AVS + QVVAG  + + V +G  EYAHL ++RPLPHT +P +L   ++ K E D +
Sbjct:    3 SKMMTGGLSEAKSATPEIQELVDEIKPTFEGKNNKKYEEFKAVSYKSQVVAGVMYYVKVCLGNDEYAHLKIYRPLPHTEKPIELVDFQMGKTEDDEV 99          
BLAST of mRNA_P-wetherbeei_contig1977.4.1 vs. uniprot
Match: UPI001CF3C402 (cystatin-B-like n=1 Tax=Bufo gargarizans TaxID=30331 RepID=UPI001CF3C402)

HSP 1 Score: 71.6 bits (174), Expect = 8.600e-12
Identity = 35/94 (37.23%), Postives = 55/94 (58.51%), Query Frame = 2
Query:  122 MIGGYSDAGPADEDVDAVLRSVRHAAEAEAKRDLSPFRAVSSRRQVVAGTNFLINVDVGKGEYAHLTVFRPLPHTNEPPQLKGMELCKAEGDHL 403
            M GG     PA+ +V A+   V+   + ++  + + F+AVS + Q VAG NF + VD+G G++ H+ +F P+PHT E   L G +L K + D L
Sbjct:   16 MCGGVGAEEPANPEVQALCDVVKPEFQVKSGVNAAKFKAVSFKSQTVAGRNFFVKVDLGGGQFCHVRIFEPMPHTGEKASLSGFKLGKKKEDAL 109          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1977.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001E1AFE791.080e-1543.62cystatin-B-like n=3 Tax=Jaculus jaculus TaxID=5133... [more]
A0A8D0C4Z2_9SAUR2.170e-1545.26Cystatin domain-containing protein n=1 Tax=Salvato... [more]
UPI00148648462.670e-1443.62cystatin-B n=4 Tax=Murinae TaxID=39107 RepID=UPI00... [more]
UPI00201460113.520e-1343.01cystatin 14b, tandem duplicate 1 n=1 Tax=Megalobra... [more]
CYTB_RAT4.710e-1342.55Cystatin-B n=2 Tax=Rattus TaxID=10114 RepID=CYTB_R... [more]
UPI0002C655D26.470e-1339.36stefin-C-like n=1 Tax=Ceratotherium simum simum Ta... [more]
A0A6P6N0Q8_CARAU2.430e-1240.43cystatin-B-like n=1 Tax=Carassius auratus TaxID=79... [more]
UPI000F4E714F3.340e-1241.49cystatin-B-like n=2 Tax=Tachysurus fulvidraco TaxI... [more]
G3WKG0_SARHA3.520e-1236.08Cystatin A n=1 Tax=Sarcophilus harrisii TaxID=9305... [more]
UPI001CF3C4028.600e-1237.23cystatin-B-like n=1 Tax=Bufo gargarizans TaxID=303... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1977contigP-wetherbeei_contig1977:4078..5761 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog6500.XP_005090623.1
Preferred nameCSTA
PFAMsCystatin
Model size1154
Max annot lvl33208|Metazoa
KEGG koko:K13907
Hectar predicted targeting categoryother localisation
Exons3
Evalue9.5e-20
EggNOG OGs2BXE4@1|root,2SF2X@2759|Eukaryota,3A8T7@33154|Opisthokonta,3BUN6@33208|Metazoa,3DC6X@33213|Bilateria
DescriptionCystatin-like domain
Cds size285
COG categoryS
BRITEko00000,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186180.984355-UTR-P-wetherbeei_contig1977:4077..41981683186180.984355-UTR-P-wetherbeei_contig1977:4077..4198Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1977 4078..4198 +
1683186181.0246084-UTR-P-wetherbeei_contig1977:5013..57611683186181.0246084-UTR-P-wetherbeei_contig1977:5013..5761Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1977 5014..5761 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186180.99517-CDS-P-wetherbeei_contig1977:4198..43731683186180.99517-CDS-P-wetherbeei_contig1977:4198..4373Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1977 4199..4373 +
1683186181.0047526-CDS-P-wetherbeei_contig1977:4519..45961683186181.0047526-CDS-P-wetherbeei_contig1977:4519..4596Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1977 4520..4596 +
1683186181.014574-CDS-P-wetherbeei_contig1977:4980..50131683186181.014574-CDS-P-wetherbeei_contig1977:4980..5013Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1977 4981..5013 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1977.4.1prot_P-wetherbeei_contig1977.4.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1977 4199..5013 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1977.4.1

>prot_P-wetherbeei_contig1977.4.1 ID=prot_P-wetherbeei_contig1977.4.1|Name=mRNA_P-wetherbeei_contig1977.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=95bp
MIGGYSDAGPADEDVDAVLRSVRHAAEAEAKRDLSPFRAVSSRRQVVAGT
NFLINVDVGKGEYAHLTVFRPLPHTNEPPQLKGMELCKAEGDHL*
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mRNA from alignment at P-wetherbeei_contig1977:4078..5761+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1977.4.1 ID=mRNA_P-wetherbeei_contig1977.4.1|Name=mRNA_P-wetherbeei_contig1977.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1684bp|location=Sequence derived from alignment at P-wetherbeei_contig1977:4078..5761+ (Phaeothamnion wetherbeei SAG_119_79)
GCGCCACCTTTAATCCCACCACCATTGGCCTCCTACGGTCGATCGAGATC CTCCCCCAACAGAATAGCAACACAACACCAAAAAATAAACAGAGGCCGCC AAAAGAACCATCAGCGTGAAAATGATCGGTGGATACTCCGACGCTGGCCC TGCGGACGAGGACGTCGACGCGGTCTTGCGCTCCGTGCGGCACGCCGCCG AGGCTGAGGCGAAGAGAGATCTCAGCCCCTTCAGGGCCGTTTCCAGCCGC CGTCAGGTTGTGGCGGGAACCAACTTCCTAATCAACGTCGACGTTGGTAA GCTGGATTAGGCATCTTATCATTCTTGGAATTTTTGTGCCGCAGACATCA CGCATGCAAGATGTTTGCATACGGCACTAGCCCCTCGCCTCCTCACTTCC AATTGCCTCCTTTCCAATTCCTTTGCCGATAATTTTGTCCAGGGAAAGGG GAGTATGCACACCTGACAGTGTTCAGGCCGCTGCCCCACACAAACGAGCC GCCGCAGCTGAAGGGAATGGTACGTCACTCGTACGATTGGCATTTGCTTT TACCGCTCCGAAAAGAAACCAACGTTAGCATTAACTTTTCAGGGCTTAAT TATGTGGAGGCCGCGGCCGTGTGACATCTGCAGCAGCGCATAAAATGGAG AGAGGAAGGAAGCCTCGGAGATTGGCGAGCGTTTTGCTAGGCCGTTTCCT TGGTCAATTCACCGCTTGTTAAATGTTGGCGCCGTTTAGTAGTGGTTACT ATGTCTGAATCAAGCTGCAGTAGCCGTCGTTGGAAGGGCCGACCGGAATG CTTCTGGTCTTTGCTGGTTCTCGTCCATACTGCAGCTGCGCGCCCCCTCC CCCTCCCCCGCTGCGACCGCCGCTGCCGCCGCTGCCCCCGCCGCCGCACG CAGGAGCTTTGCAAGGCAGAGGGAGATCACTTGTGAGCTTGCCGGCGGTG GCTGGGGCAGGGTTCGCGCAGCCATCTCCCGCCATCCATCGTGCAAGAAG CGGCAAAGCGGCCGCAGCGATGTCCATCAGTCCGCTGCCCTGTCAACGTC CGACGCGGTTTCCGAAGGAGAATCCTCAAAAGGGCTACGATCGAGCGAGG TGGCGCAAACGCCGGCACCGGCGCCGGTGCCCAGGGGAGGGATTTGTGTA AGCCAGGGTCGCAGGTATGTAGGTTCAGCATCGATGGCTACAAAATGGGT GCAAGCGCGCTTTGAATTGTTTTGGCAAACGTGCAGCGCAGGCGCTGAGA GCTGTCTGTCAACAGGGTGGATTTGCTGTGGCGACGACGAGCTGCGCAGG GTGTGTATGGGGCGATGCCGGTTCCTCTCATTGTTTGCAAAGAAGCATCC CCCGGACGCGGCAGGAGCCCCCAAACTCCGTTGGTCGCTTGTCGTGCAAT GCACGCAAGGGAAGGTAGATGGCCTAGAGCGTACAAAAATGTAACATGCA ATCTGGCAAGGGCCGAAGCTGCGGGCCGAAGCTGCTGGCGATGAGAAAAA CCTCAGCCGAAAGTTCGATTCGACTGTGCATTTTCCTCTCTCTTCCCGCC CGGGTCATATTAAACGCTGCAATCGTGGTGGGCATCGGGCGGAAGCCTCT CATAAAATTAAATCATGGACCCTAGAGCTAACCGGTAGTTGTACTCTCGT GAGGCACTTGGAAGAAAGAGGAGGGAGATTCGAA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1977:4078..5761+

>mRNA_P-wetherbeei_contig1977.4.1 ID=mRNA_P-wetherbeei_contig1977.4.1|Name=mRNA_P-wetherbeei_contig1977.4.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=285bp|location=Sequence derived from alignment at P-wetherbeei_contig1977:4078..5761+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGGTGGATACTCCGACGCTGGCCCTGCGGACGAGGACGTCGACGC
GGTCTTGCGCTCCGTGCGGCACGCCGCCGAGGCTGAGGCGAAGAGAGATC
TCAGCCCCTTCAGGGCCGTTTCCAGCCGCCGTCAGGTTGTGGCGGGAACC
AACTTCCTAATCAACGTCGACGTTGGGAAAGGGGAGTATGCACACCTGAC
AGTGTTCAGGCCGCTGCCCCACACAAACGAGCCGCCGCAGCTGAAGGGAA
TGGAGCTTTGCAAGGCAGAGGGAGATCACTTGTGA
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