mRNA_P-wetherbeei_contig1977.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1977.2.1
Unique NamemRNA_P-wetherbeei_contig1977.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1977.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1977contigP-wetherbeei_contig1977:289..2374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2087
Hectar predicted targeting categoryother localisation
Exons1
Cds size1722
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186180.8710015-CDS-P-wetherbeei_contig1977:288..20101683186180.8710015-CDS-P-wetherbeei_contig1977:288..2010Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1977 289..2010 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186180.8816772-UTR-P-wetherbeei_contig1977:2010..23741683186180.8816772-UTR-P-wetherbeei_contig1977:2010..2374Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1977 2011..2374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1977.2.1prot_P-wetherbeei_contig1977.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1977 289..2010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1977.2.1

>prot_P-wetherbeei_contig1977.2.1 ID=prot_P-wetherbeei_contig1977.2.1|Name=mRNA_P-wetherbeei_contig1977.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=574bp
MVYTGFVPKSSECDDTPTMLTTGRIAGAGVWGTQQKAVFASQRRQTVAHD
PFLQRRHQEERQYFEHHHAPQDSETWNSNFCTASTEERFGLQENEQRHWG
AATSAAFTPFATATESSQVPYGAPVAPLVPFGAWRGSGASASGRTISASS
PSPRPPPPPSQPAVAVCSAELQRVGRVYDVHFLDEGRRQQPTPPAPPAPA
SRSRAVPRAAATEGMQAPPAICSEEPPWSGRRSSHGWSPHPAGLRRHADG
GGGGSHSSHSSGGGGGNVSRSRGGDGHGGGGSSSSSSRRSKAGQIPDRMG
LLLRAIELTSPGLFVAGNSGGDGCGVGGGGSGAWECRSSDGAQRAPPGTA
EGRKMIAVRPSLDGVVTIPGSPSSRGTARPPLNGVDRCLVIATRPSFHAG
PARMPPGSARSFERRNDDTGGFGGFGGDRFGGGGGGFGNGSWTYRGDSGD
GGRHSDSGGDGSWRSGSGGGRRNSVVGIGSGSSPSTPPAETIAGQLQSPH
ASPEISRKRGLLMDKSVTPVAPRFSTAEASSWGLADLAAAAAGSTEMEPP
RKRVRTDTARVILVSQFPRSAEQW
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mRNA from alignment at P-wetherbeei_contig1977:289..2374-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1977.2.1 ID=mRNA_P-wetherbeei_contig1977.2.1|Name=mRNA_P-wetherbeei_contig1977.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2086bp|location=Sequence derived from alignment at P-wetherbeei_contig1977:289..2374- (Phaeothamnion wetherbeei SAG_119_79)
TTACAGCTCTCGGCTGAGCGTTTTATGTAAGGGTGGAGTGCAGAAACTGG
TGCCACCACCTAACCGCCGAAATACAGCAGTTTCGCAACGGTCTCACCAA
CCTCCGCAGGCTCCTGGAAAGTTCGATTTTGAAGATTTTTTCACCAAAAT
CCCTATTTTCTGATCGTTTTGGCTGAACTTACACACAAGCGGGAAGAAGG
GGAGGCGACAAGAGTTTGTTCAAGCCCTCTACCTTTGAACCGAAACGTCC
GACCTGCTCTTGGTCGCCGACGGTGTTTATTGGACAATTTGACCATCTCC
CTTCCTATGTGTTTCCCGCCGGTTGTTTGGGAAACGGAGGGCAGCTAACG
GGCTCGGAACGAGGATGGTGTATACTGGGTTCGTACCGAAATCCTCAGAG
TGCGACGACACACCAACGATGTTGACGACAGGCCGCATCGCAGGCGCTGG
GGTGTGGGGAACGCAACAGAAAGCGGTTTTCGCTTCTCAGCGGCGCCAAA
CGGTGGCGCACGACCCTTTCTTGCAGCGACGGCATCAGGAGGAGCGACAG
TATTTCGAACACCACCATGCGCCTCAAGACTCGGAAACATGGAACTCGAA
TTTCTGCACCGCTTCGACCGAGGAGCGCTTCGGGCTGCAGGAAAACGAGC
AGCGGCATTGGGGTGCCGCAACTTCTGCTGCTTTCACTCCCTTCGCCACG
GCAACGGAGTCCTCTCAGGTGCCCTACGGTGCACCTGTCGCTCCTTTGGT
GCCCTTTGGTGCCTGGCGTGGTTCCGGTGCGTCCGCGTCAGGCCGGACGA
TCTCAGCGTCTTCGCCTTCTCCGCGACCGCCGCCGCCGCCATCGCAGCCG
GCGGTGGCTGTCTGCTCTGCAGAGCTTCAAAGGGTCGGGAGGGTCTACGA
CGTACACTTTCTCGACGAAGGTCGCAGGCAGCAGCCGACGCCGCCGGCGC
CGCCGGCGCCGGCCTCCCGGTCGAGGGCGGTCCCTCGTGCCGCGGCGACT
GAGGGCATGCAGGCGCCTCCGGCCATCTGCAGCGAGGAACCACCATGGAG
CGGCAGGAGAAGCAGCCACGGGTGGTCGCCGCACCCGGCCGGCCTCCGCC
GGCACGCCGATGGCGGCGGCGGCGGCAGTCACAGCAGCCACAGCAGTGGC
GGTGGCGGCGGTAACGTGAGCCGCAGCCGCGGCGGTGACGGTCACGGCGG
CGGCGGCAGCAGCAGCAGCAGCAGCCGTCGGAGCAAAGCCGGGCAAATTC
CGGACCGAATGGGACTCTTGCTCCGCGCCATCGAGCTGACTTCGCCGGGC
CTATTCGTCGCCGGTAACAGCGGCGGCGATGGCTGCGGCGTCGGCGGCGG
CGGGAGTGGCGCCTGGGAGTGTCGTTCGTCGGACGGGGCCCAACGAGCTC
CACCGGGCACTGCGGAAGGACGAAAGATGATCGCCGTCCGCCCCTCGCTG
GACGGTGTCGTCACCATTCCCGGTTCTCCGTCGTCGCGCGGTACCGCCCG
CCCGCCTCTGAACGGCGTCGACCGCTGCCTGGTCATCGCCACCCGTCCAT
CCTTCCATGCCGGTCCCGCCAGGATGCCTCCGGGAAGCGCTCGCAGCTTT
GAACGTCGCAACGACGACACTGGGGGTTTCGGCGGCTTTGGCGGTGACCG
CTTTGGCGGTGGCGGCGGCGGCTTCGGCAACGGCAGCTGGACGTATCGCG
GCGACAGTGGTGATGGCGGCAGGCACAGCGACAGTGGCGGCGACGGAAGC
TGGCGCAGCGGCAGCGGCGGCGGACGCAGAAACTCTGTCGTCGGCATCGG
CAGCGGTTCGAGTCCGTCGACGCCGCCGGCAGAGACCATAGCCGGGCAAC
TGCAGTCGCCGCACGCTTCTCCTGAGATAAGCCGCAAGCGCGGCCTTCTC
ATGGACAAATCTGTGACCCCGGTGGCGCCGCGCTTTTCGACCGCAGAAGC
GTCGTCATGGGGGCTGGCGGACTTGGCGGCCGCGGCGGCCGGATCGACGG
AAATGGAGCCGCCGCGCAAGCGGGTCCGGACCGATACGGCGCGGGTCATC
TTGGTTTCGCAGTTTCCGCGATCGGCGGAGCAATGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1977:289..2374-

>mRNA_P-wetherbeei_contig1977.2.1 ID=mRNA_P-wetherbeei_contig1977.2.1|Name=mRNA_P-wetherbeei_contig1977.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1722bp|location=Sequence derived from alignment at P-wetherbeei_contig1977:289..2374- (Phaeothamnion wetherbeei SAG_119_79)
ATGGTGTATACTGGGTTCGTACCGAAATCCTCAGAGTGCGACGACACACC
AACGATGTTGACGACAGGCCGCATCGCAGGCGCTGGGGTGTGGGGAACGC
AACAGAAAGCGGTTTTCGCTTCTCAGCGGCGCCAAACGGTGGCGCACGAC
CCTTTCTTGCAGCGACGGCATCAGGAGGAGCGACAGTATTTCGAACACCA
CCATGCGCCTCAAGACTCGGAAACATGGAACTCGAATTTCTGCACCGCTT
CGACCGAGGAGCGCTTCGGGCTGCAGGAAAACGAGCAGCGGCATTGGGGT
GCCGCAACTTCTGCTGCTTTCACTCCCTTCGCCACGGCAACGGAGTCCTC
TCAGGTGCCCTACGGTGCACCTGTCGCTCCTTTGGTGCCCTTTGGTGCCT
GGCGTGGTTCCGGTGCGTCCGCGTCAGGCCGGACGATCTCAGCGTCTTCG
CCTTCTCCGCGACCGCCGCCGCCGCCATCGCAGCCGGCGGTGGCTGTCTG
CTCTGCAGAGCTTCAAAGGGTCGGGAGGGTCTACGACGTACACTTTCTCG
ACGAAGGTCGCAGGCAGCAGCCGACGCCGCCGGCGCCGCCGGCGCCGGCC
TCCCGGTCGAGGGCGGTCCCTCGTGCCGCGGCGACTGAGGGCATGCAGGC
GCCTCCGGCCATCTGCAGCGAGGAACCACCATGGAGCGGCAGGAGAAGCA
GCCACGGGTGGTCGCCGCACCCGGCCGGCCTCCGCCGGCACGCCGATGGC
GGCGGCGGCGGCAGTCACAGCAGCCACAGCAGTGGCGGTGGCGGCGGTAA
CGTGAGCCGCAGCCGCGGCGGTGACGGTCACGGCGGCGGCGGCAGCAGCA
GCAGCAGCAGCCGTCGGAGCAAAGCCGGGCAAATTCCGGACCGAATGGGA
CTCTTGCTCCGCGCCATCGAGCTGACTTCGCCGGGCCTATTCGTCGCCGG
TAACAGCGGCGGCGATGGCTGCGGCGTCGGCGGCGGCGGGAGTGGCGCCT
GGGAGTGTCGTTCGTCGGACGGGGCCCAACGAGCTCCACCGGGCACTGCG
GAAGGACGAAAGATGATCGCCGTCCGCCCCTCGCTGGACGGTGTCGTCAC
CATTCCCGGTTCTCCGTCGTCGCGCGGTACCGCCCGCCCGCCTCTGAACG
GCGTCGACCGCTGCCTGGTCATCGCCACCCGTCCATCCTTCCATGCCGGT
CCCGCCAGGATGCCTCCGGGAAGCGCTCGCAGCTTTGAACGTCGCAACGA
CGACACTGGGGGTTTCGGCGGCTTTGGCGGTGACCGCTTTGGCGGTGGCG
GCGGCGGCTTCGGCAACGGCAGCTGGACGTATCGCGGCGACAGTGGTGAT
GGCGGCAGGCACAGCGACAGTGGCGGCGACGGAAGCTGGCGCAGCGGCAG
CGGCGGCGGACGCAGAAACTCTGTCGTCGGCATCGGCAGCGGTTCGAGTC
CGTCGACGCCGCCGGCAGAGACCATAGCCGGGCAACTGCAGTCGCCGCAC
GCTTCTCCTGAGATAAGCCGCAAGCGCGGCCTTCTCATGGACAAATCTGT
GACCCCGGTGGCGCCGCGCTTTTCGACCGCAGAAGCGTCGTCATGGGGGC
TGGCGGACTTGGCGGCCGCGGCGGCCGGATCGACGGAAATGGAGCCGCCG
CGCAAGCGGGTCCGGACCGATACGGCGCGGGTCATCTTGGTTTCGCAGTT
TCCGCGATCGGCGGAGCAATGG
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