mRNA_P-wetherbeei_contig19754.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19754.1.1
Unique NamemRNA_P-wetherbeei_contig19754.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19754.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19754contigP-wetherbeei_contig19754:320..1266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size934
Hectar predicted targeting categoryother localisation
Exons2
Cds size567
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186180.6778705-UTR-P-wetherbeei_contig19754:319..5791683186180.6778705-UTR-P-wetherbeei_contig19754:319..579Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19754 320..579 -
1683186180.7032464-UTR-P-wetherbeei_contig19754:1159..12661683186180.7032464-UTR-P-wetherbeei_contig19754:1159..1266Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19754 1160..1266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186180.6857064-CDS-P-wetherbeei_contig19754:579..6281683186180.6857064-CDS-P-wetherbeei_contig19754:579..628Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19754 580..628 -
1683186180.6930997-CDS-P-wetherbeei_contig19754:641..11591683186180.6930997-CDS-P-wetherbeei_contig19754:641..1159Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19754 642..1159 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19754.1.1prot_P-wetherbeei_contig19754.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19754 580..1159 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19754.1.1

>prot_P-wetherbeei_contig19754.1.1 ID=prot_P-wetherbeei_contig19754.1.1|Name=mRNA_P-wetherbeei_contig19754.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=189bp
MAFAGESEHLFLGGVSRLWRSAWIAAAGAAGSNAEAALRTWVGAAVASLP
RVEWSSGPADCGGLVWDDALLRQVVRSSSSASETAISILEFGIYEGYLDP
EEKPVDSCGHSLYDFAAAFGSAAVLEWAQAHGFVRAPDLAGQAATSSLPP
PSPPEAAAAAATAAAAATAVTTASRRRLRQPPPSPRQR*
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mRNA from alignment at P-wetherbeei_contig19754:320..1266-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19754.1.1 ID=mRNA_P-wetherbeei_contig19754.1.1|Name=mRNA_P-wetherbeei_contig19754.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=947bp|location=Sequence derived from alignment at P-wetherbeei_contig19754:320..1266- (Phaeothamnion wetherbeei SAG_119_79)
CCGGCGCCTCCACCGCCGCTGCTACCAACGGCGCCACCGCCGGCGCCACC
GCTAGTTTGAGGCCACGGCTCCCCGAGCAGGCCTTCGCGTCCTGCCTGGG
CCACATCATGGCGTTCGCGGGCGAGTCGGAGCACCTGTTCCTTGGCGGCG
TCTCCCGCCTCTGGCGGAGCGCTTGGATTGCTGCGGCCGGCGCCGCCGGC
AGTAACGCAGAGGCTGCGCTGCGGACGTGGGTCGGCGCCGCCGTCGCCTC
CCTACCGCGCGTCGAGTGGAGTAGCGGCCCGGCGGACTGCGGCGGCCTTG
TATGGGATGATGCGCTTCTCCGGCAGGTCGTCCGATCGTCGAGCAGCGCC
TCCGAAACCGCCATCAGCATCTTAGAGTTTGGCATCTACGAGGGGTACCT
CGACCCCGAGGAGAAGCCGGTGGACTCCTGCGGTCACTCGCTCTACGACT
TTGCGGCCGCCTTCGGGTCCGCAGCAGTTCTGGAATGGGCGCAGGCCCAC
GGCTTTGTACGCGCACCAGATCTCGCTGGCCAGGCGGCAACGTCGTCACT
GCCGCCGCCGTCGCCGCCTGAGGCAGCCGCAGCAGCCGCCACCGCAGCAG
CAGCCGCCACCGCTGTCACCACCGCCTGTGTGCGGAACTAGCCGCCGCCG
CCTGCGGCAGCCACCACCATCGCCGCGACAGCGGTGACAGCTGCCGCGCA
GCGGCCCCGCAGGCAGCTGGCCGCCTCGGTCCGCCGCAGCGGCTTACTAC
ACGCAAATACGACGAGGGTGGCAGCGGTGGCGACAGTGTCGAGATCGGAC
AGTAACACGCGGCCGGCCGCGAGATTGGCGATGGCTGCTAGTAGTAGGGC
AGCGGCGGCGGCGGCAGCGAATAGGGTGGCCCACGAGGCATGGGCACGTA
GTCGAGAGTTTCGTGCATGCGTGTAGAGAACCTGTAAATCGAATGAT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19754:320..1266-

>mRNA_P-wetherbeei_contig19754.1.1 ID=mRNA_P-wetherbeei_contig19754.1.1|Name=mRNA_P-wetherbeei_contig19754.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=567bp|location=Sequence derived from alignment at P-wetherbeei_contig19754:320..1266- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGTTCGCGGGCGAGTCGGAGCACCTGTTCCTTGGCGGCGTCTCCCG
CCTCTGGCGGAGCGCTTGGATTGCTGCGGCCGGCGCCGCCGGCAGTAACG
CAGAGGCTGCGCTGCGGACGTGGGTCGGCGCCGCCGTCGCCTCCCTACCG
CGCGTCGAGTGGAGTAGCGGCCCGGCGGACTGCGGCGGCCTTGTATGGGA
TGATGCGCTTCTCCGGCAGGTCGTCCGATCGTCGAGCAGCGCCTCCGAAA
CCGCCATCAGCATCTTAGAGTTTGGCATCTACGAGGGGTACCTCGACCCC
GAGGAGAAGCCGGTGGACTCCTGCGGTCACTCGCTCTACGACTTTGCGGC
CGCCTTCGGGTCCGCAGCAGTTCTGGAATGGGCGCAGGCCCACGGCTTTG
TACGCGCACCAGATCTCGCTGGCCAGGCGGCAACGTCGTCACTGCCGCCG
CCGTCGCCGCCTGAGGCAGCCGCAGCAGCCGCCACCGCAGCAGCAGCCGC
CACCGCTGTCACCACCGCTAGCCGCCGCCGCCTGCGGCAGCCACCACCAT
CGCCGCGACAGCGGTGA
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