prot_P-wetherbeei_contig19741.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig19741.2.1
Unique Nameprot_P-wetherbeei_contig19741.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length93
Homology
BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 2.190e-51
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 0
Query:    2 SSVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRTT 92
            SSVEEPLDLIRLSLDERI VKCRGERELRGKLH+YDQHLNMVLGDVEETVTTVEVDEDT EEIVRTSKR+IEMLFVRGDVVILV+PP+RTT
Sbjct:    3 SSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRTT 93          
BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA)

HSP 1 Score: 164 bits (416), Expect = 4.100e-51
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 0
Query:    1 MSSVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRTT 92
            M SVEEPLDLIRLSLDERI+VKCRG+RELRGKLHAYDQHLNMVLGDVEETVTT E+DEDT+EEI+RTSKR IEMLFVRGDVVILV+PPLRTT
Sbjct:   11 MGSVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQELDEDTNEEIIRTSKRMIEMLFVRGDVVILVSPPLRTT 102          
BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: A0A7S2FJT0_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJT0_9STRA)

HSP 1 Score: 164 bits (416), Expect = 5.100e-51
Identity = 83/90 (92.22%), Postives = 88/90 (97.78%), Query Frame = 0
Query:    3 SVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRTT 92
            SVEEPLDLIRLSLDERI+VKCRG+RELRGKLHAYDQHLNMVLGDVEETVTT E+DEDTSEEI+RTSKR IEMLFVRGDVVILV+PPLRTT
Sbjct:   20 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEDTSEEIIRTSKRMIEMLFVRGDVVILVSPPLRTT 109          
BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: A0A4D9CUN8_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUN8_9STRA)

HSP 1 Score: 153 bits (387), Expect = 8.240e-47
Identity = 74/90 (82.22%), Postives = 87/90 (96.67%), Query Frame = 0
Query:    2 SSVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRT 91
            SSV+EPLDLIRLSL+ERI+VKCRGERELRGKLHA+D+HLNM+LG+VEETVTT E+DE+T EEI+RTS+R +EMLFVRGDVVILV+PPLRT
Sbjct:    3 SSVDEPLDLIRLSLEERIYVKCRGERELRGKLHAFDRHLNMILGEVEETVTTPEIDEETDEEIIRTSRRTVEMLFVRGDVVILVSPPLRT 92          
BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: A0A7S3M171_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M171_9STRA)

HSP 1 Score: 149 bits (375), Expect = 5.250e-45
Identity = 72/90 (80.00%), Postives = 86/90 (95.56%), Query Frame = 0
Query:    3 SVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRTT 92
            S++ PLDLIRLS+DERIFVKC+G+RELRGKLHA+DQHLNMVLG+VEE+VTT E+DE+T EEIV+TSKR IEMLFVRGD+VILV+PPLRT+
Sbjct:    2 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGEVEESVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTS 91          
BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: L8HA54_ACACA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HA54_ACACA)

HSP 1 Score: 148 bits (374), Expect = 1.070e-44
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 0
Query:    2 SSVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRT 91
            S+VEEPLDLIRLSLD+RI+VK RGERELRGKLHAYDQHLNMVLGDVEETVTTVE+DE+T EEI++  KR +EMLFVRGD VILV+PP+RT
Sbjct:   13 STVEEPLDLIRLSLDDRIYVKLRGERELRGKLHAYDQHLNMVLGDVEETVTTVEMDEETDEEIIKRRKRTVEMLFVRGDGVILVSPPVRT 102          
BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: A0A485K5Q3_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485K5Q3_9STRA)

HSP 1 Score: 147 bits (370), Expect = 3.430e-44
Identity = 72/91 (79.12%), Postives = 85/91 (93.41%), Query Frame = 0
Query:    1 MSSVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRT 91
            M+++ EPLDLI+LSLDERI+VKCRGERELRGKL AYDQHLNMVL DVEETVT+VE+D++T EEIV+ +KR +EMLFVRGDVVIL+APPLRT
Sbjct:    1 MATITEPLDLIKLSLDERIYVKCRGERELRGKLQAYDQHLNMVLSDVEETVTSVELDQETYEEIVKQAKRQVEMLFVRGDVVILIAPPLRT 91          
BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: A0A7S0G6S6_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S0G6S6_9STRA)

HSP 1 Score: 147 bits (370), Expect = 7.840e-44
Identity = 70/88 (79.55%), Postives = 84/88 (95.45%), Query Frame = 0
Query:    4 VEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRT 91
            +EEPLDLIRLS+DER++VKCRG+RELRGKLHAYDQHLNMVLG+VEETVTT EVDE+T EEIVR + R+++MLFVRGD+V+LV+PPLRT
Sbjct:   34 MEEPLDLIRLSIDERVYVKCRGDRELRGKLHAYDQHLNMVLGEVEETVTTHEVDEETEEEIVRKATRSVKMLFVRGDIVVLVSPPLRT 121          
BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: A0A067C375_SAPPC (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C375_SAPPC)

HSP 1 Score: 145 bits (367), Expect = 8.980e-44
Identity = 70/91 (76.92%), Postives = 85/91 (93.41%), Query Frame = 0
Query:    1 MSSVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRT 91
            M+S++EPLDLI+LSLDERI+VKCRG+RELRGKL AYDQHLNM+L DVEETVT+ EVD++T EEIV+ +KR +EMLFVRGDV++LVAPPLRT
Sbjct:    1 MASIDEPLDLIKLSLDERIYVKCRGDRELRGKLQAYDQHLNMILSDVEETVTSHEVDQETYEEIVKQAKRQVEMLFVRGDVIVLVAPPLRT 91          
BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: A0A0M0JVC1_9EUKA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVC1_9EUKA)

HSP 1 Score: 145 bits (367), Expect = 9.540e-44
Identity = 73/88 (82.95%), Postives = 82/88 (93.18%), Query Frame = 0
Query:    4 VEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRT 91
            V+EP+DL+RLSLDERI VK RG+RELRGKLHAYDQHLNMVLGDVEE VTTVEVDE+T EEI++TSKR IEMLFVRGD VIL++PPLRT
Sbjct:    6 VKEPIDLVRLSLDERIHVKMRGDRELRGKLHAYDQHLNMVLGDVEEVVTTVEVDEETYEEIIKTSKRQIEMLFVRGDGVILISPPLRT 93          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXS6_ECTSI2.190e-5193.41U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E... [more]
A0A7S2GP21_9STRA4.100e-5190.22U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D... [more]
A0A7S2FJT0_9STRA5.100e-5192.22U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=F... [more]
A0A4D9CUN8_9STRA8.240e-4782.22U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=N... [more]
A0A7S3M171_9STRA5.250e-4580.00U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=S... [more]
L8HA54_ACACA1.070e-4482.22U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=A... [more]
A0A485K5Q3_9STRA3.430e-4479.12U6 snRNA-associated Sm-like protein LSm3 n=6 Tax=S... [more]
A0A7S0G6S6_9STRA7.840e-4479.55U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=B... [more]
A0A067C375_SAPPC8.980e-4476.92U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=S... [more]
A0A0M0JVC1_9EUKA9.540e-4482.95U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=C... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 9..87
e-value: 2.5E-20
score: 83.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 11..86
e-value: 5.3E-19
score: 67.7
NoneNo IPR availableGENE3D2.30.30.100coord: 1..89
e-value: 9.1E-28
score: 97.9
NoneNo IPR availablePANTHERPTHR13110:SF13U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3coord: 2..91
IPR040002U6 snRNA-associated Sm-like protein Lsm3PANTHERPTHR13110U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3coord: 2..91
IPR034105Sm-like protein Lsm3CDDcd01730LSm3coord: 6..87
e-value: 2.97022E-40
score: 125.801
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 6..87

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19741contigP-wetherbeei_contig19741:625..1133 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19741.2.1mRNA_P-wetherbeei_contig19741.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig19741 625..1133 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig19741.2.1 ID=prot_P-wetherbeei_contig19741.2.1|Name=mRNA_P-wetherbeei_contig19741.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
MSSVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEET
VTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR040002Sm-like_LSM3
IPR034105Lsm3
IPR010920LSM_dom_sf