mRNA_P-wetherbeei_contig19741.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19741.2.1
Unique NamemRNA_P-wetherbeei_contig19741.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: D7FXS6_ECTSI (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXS6_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 2.190e-51
Identity = 85/91 (93.41%), Postives = 89/91 (97.80%), Query Frame = 1 
Query:    4 SSVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRTT 276
            SSVEEPLDLIRLSLDERI VKCRGERELRGKLH+YDQHLNMVLGDVEETVTTVEVDEDT EEIVRTSKR+IEMLFVRGDVVILV+PP+RTT
Sbjct:    3 SSVEEPLDLIRLSLDERIHVKCRGERELRGKLHSYDQHLNMVLGDVEETVTTVEVDEDTYEEIVRTSKRSIEMLFVRGDVVILVSPPVRTT 93
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BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: A0A7S2GP21_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GP21_9STRA)

HSP 1 Score: 164 bits (416), Expect = 4.100e-51
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 1 
Query:    1 MSSVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRTT 276
            M SVEEPLDLIRLSLDERI+VKCRG+RELRGKLHAYDQHLNMVLGDVEETVTT E+DEDT+EEI+RTSKR IEMLFVRGDVVILV+PPLRTT
Sbjct:   11 MGSVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQELDEDTNEEIIRTSKRMIEMLFVRGDVVILVSPPLRTT 102
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BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: A0A7S2FJT0_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJT0_9STRA)

HSP 1 Score: 164 bits (416), Expect = 5.100e-51
Identity = 83/90 (92.22%), Postives = 88/90 (97.78%), Query Frame = 1 
Query:    7 SVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRTT 276
            SVEEPLDLIRLSLDERI+VKCRG+RELRGKLHAYDQHLNMVLGDVEETVTT E+DEDTSEEI+RTSKR IEMLFVRGDVVILV+PPLRTT
Sbjct:   20 SVEEPLDLIRLSLDERIYVKCRGDRELRGKLHAYDQHLNMVLGDVEETVTTQEIDEDTSEEIIRTSKRMIEMLFVRGDVVILVSPPLRTT 109
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BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: A0A4D9CUN8_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUN8_9STRA)

HSP 1 Score: 153 bits (387), Expect = 8.240e-47
Identity = 74/90 (82.22%), Postives = 87/90 (96.67%), Query Frame = 1 
Query:    4 SSVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRT 273
            SSV+EPLDLIRLSL+ERI+VKCRGERELRGKLHA+D+HLNM+LG+VEETVTT E+DE+T EEI+RTS+R +EMLFVRGDVVILV+PPLRT
Sbjct:    3 SSVDEPLDLIRLSLEERIYVKCRGERELRGKLHAFDRHLNMILGEVEETVTTPEIDEETDEEIIRTSRRTVEMLFVRGDVVILVSPPLRT 92
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BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: A0A7S3M171_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M171_9STRA)

HSP 1 Score: 149 bits (375), Expect = 5.250e-45
Identity = 72/90 (80.00%), Postives = 86/90 (95.56%), Query Frame = 1 
Query:    7 SVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRTT 276
            S++ PLDLIRLS+DERIFVKC+G+RELRGKLHA+DQHLNMVLG+VEE+VTT E+DE+T EEIV+TSKR IEMLFVRGD+VILV+PPLRT+
Sbjct:    2 SIDTPLDLIRLSIDERIFVKCKGDRELRGKLHAFDQHLNMVLGEVEESVTTREIDEETEEEIVKTSKRNIEMLFVRGDIVILVSPPLRTS 91
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BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: L8HA54_ACACA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HA54_ACACA)

HSP 1 Score: 148 bits (374), Expect = 1.070e-44
Identity = 74/90 (82.22%), Postives = 84/90 (93.33%), Query Frame = 1 
Query:    4 SSVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRT 273
            S+VEEPLDLIRLSLD+RI+VK RGERELRGKLHAYDQHLNMVLGDVEETVTTVE+DE+T EEI++  KR +EMLFVRGD VILV+PP+RT
Sbjct:   13 STVEEPLDLIRLSLDDRIYVKLRGERELRGKLHAYDQHLNMVLGDVEETVTTVEMDEETDEEIIKRRKRTVEMLFVRGDGVILVSPPVRT 102
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BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: A0A485K5Q3_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=6 Tax=Saprolegniaceae TaxID=4764 RepID=A0A485K5Q3_9STRA)

HSP 1 Score: 147 bits (370), Expect = 3.430e-44
Identity = 72/91 (79.12%), Postives = 85/91 (93.41%), Query Frame = 1 
Query:    1 MSSVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRT 273
            M+++ EPLDLI+LSLDERI+VKCRGERELRGKL AYDQHLNMVL DVEETVT+VE+D++T EEIV+ +KR +EMLFVRGDVVIL+APPLRT
Sbjct:    1 MATITEPLDLIKLSLDERIYVKCRGERELRGKLQAYDQHLNMVLSDVEETVTSVELDQETYEEIVKQAKRQVEMLFVRGDVVILIAPPLRT 91
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BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: A0A7S0G6S6_9STRA (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S0G6S6_9STRA)

HSP 1 Score: 147 bits (370), Expect = 7.840e-44
Identity = 70/88 (79.55%), Postives = 84/88 (95.45%), Query Frame = 1 
Query:   10 VEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRT 273
            +EEPLDLIRLS+DER++VKCRG+RELRGKLHAYDQHLNMVLG+VEETVTT EVDE+T EEIVR + R+++MLFVRGD+V+LV+PPLRT
Sbjct:   34 MEEPLDLIRLSIDERVYVKCRGDRELRGKLHAYDQHLNMVLGEVEETVTTHEVDEETEEEIVRKATRSVKMLFVRGDIVVLVSPPLRT 121
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BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: A0A067C375_SAPPC (U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C375_SAPPC)

HSP 1 Score: 145 bits (367), Expect = 8.980e-44
Identity = 70/91 (76.92%), Postives = 85/91 (93.41%), Query Frame = 1 
Query:    1 MSSVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRT 273
            M+S++EPLDLI+LSLDERI+VKCRG+RELRGKL AYDQHLNM+L DVEETVT+ EVD++T EEIV+ +KR +EMLFVRGDV++LVAPPLRT
Sbjct:    1 MASIDEPLDLIKLSLDERIYVKCRGDRELRGKLQAYDQHLNMILSDVEETVTSHEVDQETYEEIVKQAKRQVEMLFVRGDVIVLVAPPLRT 91
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BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Match: A0A0M0JVC1_9EUKA (U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JVC1_9EUKA)

HSP 1 Score: 145 bits (367), Expect = 9.540e-44
Identity = 73/88 (82.95%), Postives = 82/88 (93.18%), Query Frame = 1 
Query:   10 VEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEETVTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRT 273
            V+EP+DL+RLSLDERI VK RG+RELRGKLHAYDQHLNMVLGDVEE VTTVEVDE+T EEI++TSKR IEMLFVRGD VIL++PPLRT
Sbjct:    6 VKEPIDLVRLSLDERIHVKMRGDRELRGKLHAYDQHLNMVLGDVEEVVTTVEVDEETYEEIIKTSKRQIEMLFVRGDGVILISPPLRT 93
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19741.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXS6_ECTSI2.190e-5193.41U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=E... [more]
A0A7S2GP21_9STRA4.100e-5190.22U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=D... [more]
A0A7S2FJT0_9STRA5.100e-5192.22U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=F... [more]
A0A4D9CUN8_9STRA8.240e-4782.22U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=N... [more]
A0A7S3M171_9STRA5.250e-4580.00U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=S... [more]
L8HA54_ACACA1.070e-4482.22U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=A... [more]
A0A485K5Q3_9STRA3.430e-4479.12U6 snRNA-associated Sm-like protein LSm3 n=6 Tax=S... [more]
A0A7S0G6S6_9STRA7.840e-4479.55U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=B... [more]
A0A067C375_SAPPC8.980e-4476.92U6 snRNA-associated Sm-like protein LSm3 n=2 Tax=S... [more]
A0A0M0JVC1_9EUKA9.540e-4482.95U6 snRNA-associated Sm-like protein LSm3 n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19741contigP-wetherbeei_contig19741:625..1133 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXS6
Preferred nameLSM3
PFAMsLSM
Model size279
Max annot lvl2759|Eukaryota
KEGG koko:K12622
KEGG Pathwayko03018,ko03040,map03018,map03040
KEGG ModuleM00354,M00396,M00397
Hectar predicted targeting categoryother localisation
GOsGO:0000288,GO:0000291,GO:0000375,GO:0000377,GO:0000398,GO:0000781,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005688,GO:0005694,GO:0005697,GO:0005730,GO:0005732,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0017069,GO:0017070,GO:0019222,GO:0019439,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0030629,GO:0031974,GO:0031981,GO:0032991,GO:0033962,GO:0034470,GO:0034622,GO:0034641,GO:0034655,GO:0034660,GO:0035770,GO:0036464,GO:0042254,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045292,GO:0046483,GO:0046540,GO:0046700,GO:0048519,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070034,GO:0070925,GO:0071011,GO:0071013,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0098687,GO:0120114,GO:0120115,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1990726,GO:1990904
Exons2
Evalue3.58e-52
EggNOG OGsKOG3460@1|root,KOG3460@2759|Eukaryota
Ec32 ortholog descriptionU6 snRNA-associated Sm-like protein LSm3
Ec32 orthologEc-03_001640.1
Descriptioncytoplasmic mRNA processing body assembly
Cds size279
COG categoryJ
BRITEko00000,ko00001,ko00002,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186180.3659375-CDS-P-wetherbeei_contig19741:624..7261683186180.3659375-CDS-P-wetherbeei_contig19741:624..726Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19741 625..726 +
1683186180.3765235-CDS-P-wetherbeei_contig19741:956..11331683186180.3765235-CDS-P-wetherbeei_contig19741:956..1133Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19741 957..1133 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19741.2.1prot_P-wetherbeei_contig19741.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19741 625..1133 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19741.2.1

>prot_P-wetherbeei_contig19741.2.1 ID=prot_P-wetherbeei_contig19741.2.1|Name=mRNA_P-wetherbeei_contig19741.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=93bp
MSSVEEPLDLIRLSLDERIFVKCRGERELRGKLHAYDQHLNMVLGDVEET
VTTVEVDEDTSEEIVRTSKRAIEMLFVRGDVVILVAPPLRTT*
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mRNA from alignment at P-wetherbeei_contig19741:625..1133+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19741.2.1 ID=mRNA_P-wetherbeei_contig19741.2.1|Name=mRNA_P-wetherbeei_contig19741.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=509bp|location=Sequence derived from alignment at P-wetherbeei_contig19741:625..1133+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCTCAGTAGAGGAGCCGCTCGACCTGATTCGTCTCTCCCTCGACGA
GCGGATATTCGTAAAGTGCCGTGGGGAACGCGAATTAAGAGGGAAATTGC
ATGTGAGTGCACGGGGTGTCTTTTTTTCCTTAAACGAAGGCTGTTTTCTT
GGCAGCTCAAACACTTCCTCGGCATTTGTTGCTATGCTCTTCTGCCCGTC
GCTTCCGACGAACTCTGCGTTTGGCAACGAACAACTAAGTGGATCTTTTG
ATACCTCTGCCACCTCTCTAACGGCAACACCGCCCCTCAAGCAAAATTTC
CCGGGACCAAGAACGCCCCAACCCTGTGACAGGCCTATGATCAGCACTTG
AACATGGTGCTGGGGGACGTGGAGGAGACGGTGACGACGGTAGAAGTCGA
CGAGGACACGAGCGAGGAGATTGTGCGCACATCGAAGCGCGCCATCGAGA
TGCTCTTCGTGCGGGGCGACGTCGTCATCCTCGTGGCGCCGCCGCTGCGA
ACAACATAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19741:625..1133+

>mRNA_P-wetherbeei_contig19741.2.1 ID=mRNA_P-wetherbeei_contig19741.2.1|Name=mRNA_P-wetherbeei_contig19741.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=279bp|location=Sequence derived from alignment at P-wetherbeei_contig19741:625..1133+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCCTCAGTAGAGGAGCCGCTCGACCTGATTCGTCTCTCCCTCGACGA
GCGGATATTCGTAAAGTGCCGTGGGGAACGCGAATTAAGAGGGAAATTGC
ATGCCTATGATCAGCACTTGAACATGGTGCTGGGGGACGTGGAGGAGACG
GTGACGACGGTAGAAGTCGACGAGGACACGAGCGAGGAGATTGTGCGCAC
ATCGAAGCGCGCCATCGAGATGCTCTTCGTGCGGGGCGACGTCGTCATCC
TCGTGGCGCCGCCGCTGCGAACAACATAG
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