mRNA_P-wetherbeei_contig19729.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19729.1.1
Unique NamemRNA_P-wetherbeei_contig19729.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19729.1.1 vs. uniprot
Match: F6DUT7_DESRL (NAD-dependent epimerase/dehydratase n=1 Tax=Desulforamulus ruminis (strain ATCC 23193 / DSM 2154 / NCIMB 8452 / DL) TaxID=696281 RepID=F6DUT7_DESRL)

HSP 1 Score: 80.5 bits (197), Expect = 1.990e-15
Identity = 58/143 (40.56%), Postives = 72/143 (50.35%), Query Frame = 1
Query:   19 VTGASGFLGRHLVARLRSCQATVLPLDRS---------HGV-----DLLDPTSLSAALRNSSPTHVFHLAASLHRGGTRQEACQNFSVNVNGTHNLLAMLSELNLHPTCVLAGTADVYGSGPAPFAESQALSPISSYAASKLA 405
            VTGA GF+GRHL+ RL      +  L R+         H V     DLLD   L   ++  SP  VFHLA    RG TR+   Q +  N+  T NLL  L E +     VL G+ + YG GP PF E Q   P+S+Y ASK A
Sbjct:    2 VTGAGGFIGRHLLKRLTGETVEIGALVRNKDPLSFMPTHKVSLLCGDLLDEVRLRKIIKEFSPDQVFHLAGVRPRGKTRKIVQQAYQGNLTATMNLLGCLQESSCR-AIVLLGSTEEYGLGPGPFREDQPPCPVSAYGASKAA 143          
BLAST of mRNA_P-wetherbeei_contig19729.1.1 vs. uniprot
Match: A0A355QHL7_9ACTN (GDP-mannose 4,6 dehydratase n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A355QHL7_9ACTN)

HSP 1 Score: 80.5 bits (197), Expect = 2.010e-15
Identity = 55/132 (41.67%), Postives = 69/132 (52.27%), Query Frame = 1
Query:   19 VTGASGFLGRHLVARLRSCQATVLPLDRSHG-VDLLDPTSLSAALRNSSPTHVFHLAASLHRGGTRQEACQNFSVNVNGTHNLL--AMLSELNLHPTCVLAGTADVYGSGPAPFAESQALSPISSYAASKLA 405
            VTGASGF+GRHLVA LR C   V+P DRS G  DLLD    +  +    P  V+HLA     G +     +    NV GT+N+L  A L+E+    T   A    V  +   P  ES  + P+S YAASK A
Sbjct:    8 VTGASGFVGRHLVAHLRDCGDEVVPTDRSDGGPDLLDADGFATLVAEVRPDVVYHLAGQADVGRSWTAPVETLRANVEGTYNVLEAARLAEVGRVLTVTSADIYGVVSTDELPLTESAPVRPVSPYAASKAA 139          
BLAST of mRNA_P-wetherbeei_contig19729.1.1 vs. uniprot
Match: A0A7V5BDA6_9BACT (NAD-dependent epimerase/dehydratase family protein n=1 Tax=Saprospiraceae bacterium TaxID=2202734 RepID=A0A7V5BDA6_9BACT)

HSP 1 Score: 80.1 bits (196), Expect = 2.590e-15
Identity = 54/137 (39.42%), Postives = 76/137 (55.47%), Query Frame = 1
Query:   13 VAVTGASGFLGRHLVARLRSCQATVLPLDR----SHGVDLLDPTSLSA---ALRNSSPTHVFHLAASLHRGGTRQEACQNFSVNVNGTHNLLAMLSELNLHPTCVLAGTADVYGSGPAPFAESQALSPISSYAASKL 402
            + VTG +G+LGRHLV RLR+ QA V  +D+    S    +LD T L     A+    P  +FHLAASL+R        +  ++N+NGT NLL  L   N +   +   T++VYGS  APF E+Q     S Y+ +K+
Sbjct:   11 ILVTGGNGYLGRHLVERLRNAQADVYIMDKFGDASAKAFILDITDLDVVRTAIAKIQPDIIFHLAASLNRERNFDRFEETNNINLNGTKNLLFALQNTN-YQHFIFTSTSEVYGSNMAPFVETQLADAASPYSLTKV 146          
BLAST of mRNA_P-wetherbeei_contig19729.1.1 vs. uniprot
Match: A0A6I3CZW1_9ACTN (NAD-dependent epimerase/dehydratase family protein n=6 Tax=root TaxID=1 RepID=A0A6I3CZW1_9ACTN)

HSP 1 Score: 79.3 bits (194), Expect = 5.150e-15
Identity = 54/132 (40.91%), Postives = 70/132 (53.03%), Query Frame = 1
Query:   19 VTGASGFLGRHLVARLRSCQATVLPLDRSHGVDLLDPTSLSAALRNSSPTHVFHLAASLHRGGTRQEACQNFSVNVNGTHNLLAMLSELNLHPTCVLAGTADVYG---SGPAPFAESQALSPISSYAASKLA 405
            VTGA+GF+GRHL A L     TV+ +DR+ G DLLDP ++ A L +  P  V+HL      G +       F VN  GT NLL      N  P  +   +ADVYG       P AE+    P++ YAASK+A
Sbjct:    5 VTGAAGFVGRHLCAHLLGEGDTVIGVDRADGPDLLDPKAVHALLADIKPDVVYHLGGWSDVGASWDYPLDAFRVNAEGTLNLLQACVS-NGKPRVLAVSSADVYGRVSQNELPIAETTPFRPVTPYAASKVA 135          
BLAST of mRNA_P-wetherbeei_contig19729.1.1 vs. uniprot
Match: A0A6L6ERG7_9ACTN (NAD-dependent epimerase/dehydratase family protein n=2 Tax=root TaxID=1 RepID=A0A6L6ERG7_9ACTN)

HSP 1 Score: 79.3 bits (194), Expect = 5.210e-15
Identity = 56/133 (42.11%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   19 VTGASGFLGRHLVARLRSCQATVLPLDRSHGVDLLDPTSLSAALRNSSPTHVFHLAASLHRGGTRQEACQNFSVNVNGTHNLL-AMLSELNLHPTCVLAGTADVYGS-GPA--PFAESQALSPISSYAASKLA 405
            +TGA GF+GRHL   L +C  TV+ +DR  G DLLDP +L A L    P  V+HLA     G +     + F VN  GT NLL A ++  +  P  +   +ADVYG   PA  P  E     P++ YAASK+A
Sbjct:    9 ITGADGFVGRHLSRHLTACGDTVIGVDRPAGPDLLDPAALDALLAEVRPDVVYHLAGWSDIGASWNAPRECFEVNATGTLNLLQACIAHGS--PRVLAVSSADVYGRVDPADLPINEETPFRPVTPYAASKIA 139          
BLAST of mRNA_P-wetherbeei_contig19729.1.1 vs. uniprot
Match: A0A7V8YMH9_9ACTN (GDP-mannose 4,6-dehydratase n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7V8YMH9_9ACTN)

HSP 1 Score: 79.3 bits (194), Expect = 5.700e-15
Identity = 54/134 (40.30%), Postives = 74/134 (55.22%), Query Frame = 1
Query:   19 VTGASGFLGRHLVARLRSCQATVLPLDR--SHGVDLLDPTSLSAALRNSSPTHVFHLAASLHRGGTRQEACQNFSVNVNGTHNLLAMLSELNLHPTCVLAGTADVYGS---GPAPFAESQALSPISSYAASKLA 405
            VTGA GF+GRHLVA L++C   V+ LDR     VD+ D  ++  A+ +++P  V+HLAA  H G         F VN  GT ++L   +  N+    V+ G+ADVYG+      P  E   L PI+ Y ASK A
Sbjct:    5 VTGADGFVGRHLVAHLQACDDDVISLDRHDDEPVDVTDAAAVRVAVEDAAPHVVYHLAAISHVGNAWDAPAHVFRVNAEGTLHVLRACAGANVGRVLVV-GSADVYGAVDERDLPLDEHAPLRPITPYGASKAA 137          
BLAST of mRNA_P-wetherbeei_contig19729.1.1 vs. uniprot
Match: A0A7K1A3T8_9ACTN (NAD-dependent epimerase/dehydratase family protein n=4 Tax=root TaxID=1 RepID=A0A7K1A3T8_9ACTN)

HSP 1 Score: 78.2 bits (191), Expect = 1.390e-14
Identity = 53/132 (40.15%), Postives = 71/132 (53.79%), Query Frame = 1
Query:   19 VTGASGFLGRHLVARLRSCQATVLPLDRSHGVDLLDPTSLSAALRNSSPTHVFHLAASLHRGGTRQEACQNFSVNVNGTHNLLAMLSELNLHPTCVLAGTADVYGSGPA---PFAESQALSPISSYAASKLA 405
            VTGA+GF+GRHL   L +   TV+ +DR+ G DLLDP +++A L +  P  V+HL      G +       F VN  GT NLL      N  P  +   +AD+YG   A   P  ES    P++ YAASK+A
Sbjct:    6 VTGAAGFVGRHLCEHLNNEGDTVIGVDRADGPDLLDPVAVNALLADIRPDVVYHLGGWSDVGASWDYPLDAFRVNAEGTLNLL-QACVANGKPRVLAVSSADIYGHVTAEELPIHESTPFRPVTPYAASKVA 136          
BLAST of mRNA_P-wetherbeei_contig19729.1.1 vs. uniprot
Match: A0A831TJW8_9BACL (NAD(P)-dependent oxidoreductase n=1 Tax=Paenibacillaceae bacterium TaxID=2003592 RepID=A0A831TJW8_9BACL)

HSP 1 Score: 77.4 bits (189), Expect = 2.840e-14
Identity = 51/142 (35.92%), Postives = 72/142 (50.70%), Query Frame = 1
Query:    4 GATVAVTGASGFLGRHLVARLRSCQATVLPLDR---------SHGVDLLDPTSLSAALRNSSPTHVFHLAASLHRGGTRQEACQNFSVNVNGTHNLLAMLSELNLHPTCVLAGTADVYGSGPAPFAESQALSPISSYAASKL 402
            G  V +TGA+GF+G+HL ++L  C ATV  L R          +  DL D T +   +R S+P  +FHLA   +R             NV G+ NL    S+L+     ++ GTA+ YG    PF E    SP+S+Y+ SKL
Sbjct:    8 GKNVLITGANGFVGKHLTSKLIDCSATVSTLTRFPSPLQQLEQYIGDLRDNTFVEETVRTSNPNFIFHLAGYKNRTAAIPAFYDAIEHNVIGSLNLFHAASKLDSLEGIIIIGTAEEYGHNQCPFVEDMRESPVSAYSFSKL 149          
BLAST of mRNA_P-wetherbeei_contig19729.1.1 vs. uniprot
Match: UPI001AA0AF07 (GDP-mannose 4,6-dehydratase n=1 Tax=Rhabdothermincola sediminis TaxID=2751370 RepID=UPI001AA0AF07)

HSP 1 Score: 77.0 bits (188), Expect = 3.610e-14
Identity = 54/133 (40.60%), Postives = 73/133 (54.89%), Query Frame = 1
Query:   19 VTGASGFLGRHLVARLRSCQATVLPLDRSHG-VDLLDPTSLSAALRNSSPTHVFHLAASLHRGGTRQEACQNFSVNVNGTHNLLAMLSELNLHPTCVLAGTADVYGS---GPAPFAESQALSPISSYAASKLA 405
            VTGA+GF+GRHL A L +    V+ +DR  G  DLLD   L+A +R+ +P  V+HL      G + ++    F VN  GT NLL  L+   L    ++  +ADVYG       P  E   L PI+ YAASK+A
Sbjct:    5 VTGAAGFVGRHLTAHLAAMGDEVVGIDRHAGHPDLLDAEGLAALVRDEAPDAVYHLGGWSDVGASWEQPIDTFRVNAEGTLNLL--LACRGLGARVLVVTSADVYGKVSLAELPLTEESPLRPITPYAASKIA 135          
BLAST of mRNA_P-wetherbeei_contig19729.1.1 vs. uniprot
Match: A0A2D6PG53_9ACTN (NAD(P)-bd_dom domain-containing protein n=1 Tax=Acidimicrobiaceae bacterium TaxID=2024894 RepID=A0A2D6PG53_9ACTN)

HSP 1 Score: 77.0 bits (188), Expect = 8.070e-14
Identity = 54/133 (40.60%), Postives = 68/133 (51.13%), Query Frame = 1
Query:   19 VTGASGFLGRHLVARLRSCQATVLPLDRSHG-VDLLDPTSLSAALRNSSPTHVFHLAASLHRGGTRQEACQNFSVNVNGTHNLLAMLSELNLHPTCVLAGTADVYG---SGPAPFAESQALSPISSYAASKLA 405
            VTGASGF+GRHLVA L  C   V+  DRS G  DLLD    +A +    P  V+HLA     G +     +    NV GT+N+LA      +    V   +AD+YG       P  ES  + P+S YAASK A
Sbjct:  194 VTGASGFVGRHLVAHLEDCGDEVVQTDRSDGGPDLLDADGFAALVAEVRPDVVYHLAGQADVGRSWSAPVETLRANVEGTYNVLAAARAAEVGRV-VTVTSADIYGLVSPDDLPLTESAPVRPVSPYAASKAA 325          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19729.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F6DUT7_DESRL1.990e-1540.56NAD-dependent epimerase/dehydratase n=1 Tax=Desulf... [more]
A0A355QHL7_9ACTN2.010e-1541.67GDP-mannose 4,6 dehydratase n=1 Tax=Acidimicrobiac... [more]
A0A7V5BDA6_9BACT2.590e-1539.42NAD-dependent epimerase/dehydratase family protein... [more]
A0A6I3CZW1_9ACTN5.150e-1540.91NAD-dependent epimerase/dehydratase family protein... [more]
A0A6L6ERG7_9ACTN5.210e-1542.11NAD-dependent epimerase/dehydratase family protein... [more]
A0A7V8YMH9_9ACTN5.700e-1540.30GDP-mannose 4,6-dehydratase n=1 Tax=Actinomycetia ... [more]
A0A7K1A3T8_9ACTN1.390e-1440.15NAD-dependent epimerase/dehydratase family protein... [more]
A0A831TJW8_9BACL2.840e-1435.92NAD(P)-dependent oxidoreductase n=1 Tax=Paenibacil... [more]
UPI001AA0AF073.610e-1440.60GDP-mannose 4,6-dehydratase n=1 Tax=Rhabdotherminc... [more]
A0A2D6PG53_9ACTN8.070e-1440.60NAD(P)-bd_dom domain-containing protein n=1 Tax=Ac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19729contigP-wetherbeei_contig19729:857..1261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog696281.Desru_1969
PFAMsEpimerase
Model size405
Max annot lvl186801|Clostridia
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.26e-16
EggNOG OGsCOG0451@1|root,COG0451@2|Bacteria,1UZR1@1239|Firmicutes,24DWP@186801|Clostridia
DescriptionNAD dependent epimerase dehydratase family
Cds size405
COG categoryGM
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186179.9557269-CDS-P-wetherbeei_contig19729:856..12611683186179.9557269-CDS-P-wetherbeei_contig19729:856..1261Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19729 857..1261 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19729.1.1prot_P-wetherbeei_contig19729.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19729 857..1261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19729.1.1

>prot_P-wetherbeei_contig19729.1.1 ID=prot_P-wetherbeei_contig19729.1.1|Name=mRNA_P-wetherbeei_contig19729.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
AGATVAVTGASGFLGRHLVARLRSCQATVLPLDRSHGVDLLDPTSLSAAL
RNSSPTHVFHLAASLHRGGTRQEACQNFSVNVNGTHNLLAMLSELNLHPT
CVLAGTADVYGSGPAPFAESQALSPISSYAASKLA
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mRNA from alignment at P-wetherbeei_contig19729:857..1261+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19729.1.1 ID=mRNA_P-wetherbeei_contig19729.1.1|Name=mRNA_P-wetherbeei_contig19729.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig19729:857..1261+ (Phaeothamnion wetherbeei SAG_119_79)
GCTGGCGCAACTGTAGCGGTCACCGGCGCGAGCGGGTTTCTTGGACGTCA TCTCGTCGCTCGATTGCGAAGTTGCCAGGCAACCGTTCTTCCTTTAGACC GCAGCCACGGAGTAGATCTCCTCGACCCTACGTCCTTATCTGCAGCACTG AGAAATTCTTCTCCAACTCACGTATTTCATCTCGCCGCATCTCTCCATCG CGGAGGCACGCGCCAGGAGGCCTGCCAGAACTTCAGCGTCAATGTGAATG GCACGCACAATCTCTTAGCAATGCTGAGCGAGCTAAATCTCCACCCTACT TGCGTATTGGCGGGCACAGCGGACGTTTACGGCTCAGGCCCGGCCCCTTT CGCAGAGTCTCAGGCTCTTTCGCCAATATCTTCGTACGCGGCCTCAAAAC TGGCA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19729:857..1261+

>mRNA_P-wetherbeei_contig19729.1.1 ID=mRNA_P-wetherbeei_contig19729.1.1|Name=mRNA_P-wetherbeei_contig19729.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig19729:857..1261+ (Phaeothamnion wetherbeei SAG_119_79)
GCTGGCGCAACTGTAGCGGTCACCGGCGCGAGCGGGTTTCTTGGACGTCA
TCTCGTCGCTCGATTGCGAAGTTGCCAGGCAACCGTTCTTCCTTTAGACC
GCAGCCACGGAGTAGATCTCCTCGACCCTACGTCCTTATCTGCAGCACTG
AGAAATTCTTCTCCAACTCACGTATTTCATCTCGCCGCATCTCTCCATCG
CGGAGGCACGCGCCAGGAGGCCTGCCAGAACTTCAGCGTCAATGTGAATG
GCACGCACAATCTCTTAGCAATGCTGAGCGAGCTAAATCTCCACCCTACT
TGCGTATTGGCGGGCACAGCGGACGTTTACGGCTCAGGCCCGGCCCCTTT
CGCAGAGTCTCAGGCTCTTTCGCCAATATCTTCGTACGCGGCCTCAAAAC
TGGCA
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