mRNA_P-wetherbeei_contig1965.5.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1965.5.1
Unique NamemRNA_P-wetherbeei_contig1965.5.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1965.5.1 vs. uniprot
Match: D8LGL2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGL2_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 2.420e-64
Identity = 103/126 (81.75%), Postives = 112/126 (88.89%), Query Frame = 1 
Query:    1 MLARCSPPQSLVISPEFQHILRILNTNIDGRRKVMFALTAIGGVGRRFSNLICKKAEVDVNKRAGELTADEIEKLVAIIQNPRQFQIPDWFLNRQKDWKTGKFSQIFSQNIAAKLREDLERLKKIR 378
            +L R     SLVISPEFQHILRILNTNIDGRRKV ++LT+I GVGRRF+NLICKKAEVD NKRAGE+TADEIEKLVAIIQNPRQF+IPDWFLNRQKDWKTGK +QI SQ I  KLR+DLERLKKIR
Sbjct:   33 VLLRRVRAMSLVISPEFQHILRILNTNIDGRRKVQYSLTSIRGVGRRFANLICKKAEVDPNKRAGEMTADEIEKLVAIIQNPRQFKIPDWFLNRQKDWKTGKTTQISSQTIDQKLRDDLERLKKIR 158
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BLAST of mRNA_P-wetherbeei_contig1965.5.1 vs. uniprot
Match: A0A6T5XJF3_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A6T5XJF3_9STRA)

HSP 1 Score: 200 bits (508), Expect = 6.330e-64
Identity = 95/118 (80.51%), Postives = 111/118 (94.07%), Query Frame = 1 
Query:   25 QSLVISPEFQHILRILNTNIDGRRKVMFALTAIGGVGRRFSNLICKKAEVDVNKRAGELTADEIEKLVAIIQNPRQFQIPDWFLNRQKDWKTGKFSQIFSQNIAAKLREDLERLKKIR 378
            ++L+  PEFQHILRILNTN++G+R V+F LT I G+GRRF++LICKKAEVDVNKRAGELTADEIEKLVAIIQNPRQF+IP WFLNRQKDWKTGK+SQIF+QNIAAKLR+D+ER+KKIR
Sbjct:    3 EALMQGPEFQHILRILNTNVEGKRNVVFGLTKINGLGRRFADLICKKAEVDVNKRAGELTADEIEKLVAIIQNPRQFKIPTWFLNRQKDWKTGKYSQIFAQNIAAKLRDDIERMKKIR 120
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BLAST of mRNA_P-wetherbeei_contig1965.5.1 vs. uniprot
Match: A0A7S2BE88_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BE88_9STRA)

HSP 1 Score: 197 bits (502), Expect = 6.110e-63
Identity = 96/117 (82.05%), Postives = 108/117 (92.31%), Query Frame = 1 
Query:   28 SLVISPEFQHILRILNTNIDGRRKVMFALTAIGGVGRRFSNLICKKAEVDVNKRAGELTADEIEKLVAIIQNPRQFQIPDWFLNRQKDWKTGKFSQIFSQNIAAKLREDLERLKKIR 378
            SL+ISP+FQHILRILNTNIDG RKVMF+LTAI G+GRRF+NLICKKAEVD NKRAGELT DE+EKLVAIIQNP+QF+IP WFLNRQKD+KTG++ Q FS N+ AKLREDLERLKKIR
Sbjct:    2 SLIISPDFQHILRILNTNIDGTRKVMFSLTAITGIGRRFANLICKKAEVDPNKRAGELTQDEVEKLVAIIQNPKQFKIPMWFLNRQKDYKTGRYQQAFSNNLGAKLREDLERLKKIR 118
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BLAST of mRNA_P-wetherbeei_contig1965.5.1 vs. uniprot
Match: A0A6H5KYA8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYA8_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 6.310e-63
Identity = 99/117 (84.62%), Postives = 107/117 (91.45%), Query Frame = 1 
Query:   28 SLVISPEFQHILRILNTNIDGRRKVMFALTAIGGVGRRFSNLICKKAEVDVNKRAGELTADEIEKLVAIIQNPRQFQIPDWFLNRQKDWKTGKFSQIFSQNIAAKLREDLERLKKIR 378
            SLVISPEFQHILRILNTNIDGRRKV ++LT+I GVGRRF+NLICKKAEVD NKRAGE+TADEIEKLVAIIQ PRQF+IPDWFLNRQKDWKTG  +QI SQ I  KLR+DLERLKKIR
Sbjct:    2 SLVISPEFQHILRILNTNIDGRRKVQYSLTSIRGVGRRFANLICKKAEVDPNKRAGEMTADEIEKLVAIIQTPRQFKIPDWFLNRQKDWKTGTTTQISSQTIDQKLRDDLERLKKIR 118
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BLAST of mRNA_P-wetherbeei_contig1965.5.1 vs. uniprot
Match: A0A836C976_9STRA (Ribosomal protein S13 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C976_9STRA)

HSP 1 Score: 197 bits (500), Expect = 1.050e-62
Identity = 97/116 (83.62%), Postives = 105/116 (90.52%), Query Frame = 1 
Query:   31 LVISPEFQHILRILNTNIDGRRKVMFALTAIGGVGRRFSNLICKKAEVDVNKRAGELTADEIEKLVAIIQNPRQFQIPDWFLNRQKDWKTGKFSQIFSQNIAAKLREDLERLKKIR 378
            LV+ P+FQHILRILNTNIDGR KVM+ALT + GVGRRFSNLICKKAEVD  KRAG LTADEIEKLVAIIQNPRQF++PDWFLNRQ+DWKTGK  Q F+QNIA KLREDLERLKKIR
Sbjct:    1 LVVGPDFQHILRILNTNIDGRIKVMYALTKVPGVGRRFSNLICKKAEVDHTKRAGMLTADEIEKLVAIIQNPRQFKVPDWFLNRQRDWKTGKSGQTFAQNIAQKLREDLERLKKIR 116
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BLAST of mRNA_P-wetherbeei_contig1965.5.1 vs. uniprot
Match: F0XYV2_AURAN (Uncharacterized protein n=4 Tax=Pelagomonadales TaxID=54409 RepID=F0XYV2_AURAN)

HSP 1 Score: 196 bits (497), Expect = 3.890e-62
Identity = 95/117 (81.20%), Postives = 108/117 (92.31%), Query Frame = 1 
Query:   28 SLVISPEFQHILRILNTNIDGRRKVMFALTAIGGVGRRFSNLICKKAEVDVNKRAGELTADEIEKLVAIIQNPRQFQIPDWFLNRQKDWKTGKFSQIFSQNIAAKLREDLERLKKIR 378
            SLVISP+FQHILR+LNTNIDGRRKVMFALT+I GVGRRFSN++CKKA VD +KRAGELTADE+EKLVAIIQNP+QF+IP WFLNRQKD+KTGK+SQ F+  +  KLREDLERLKKIR
Sbjct:    5 SLVISPDFQHILRVLNTNIDGRRKVMFALTSIPGVGRRFSNVVCKKAAVDAHKRAGELTADEVEKLVAIIQNPKQFKIPAWFLNRQKDYKTGKYSQAFANTLQQKLREDLERLKKIR 121
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BLAST of mRNA_P-wetherbeei_contig1965.5.1 vs. uniprot
Match: A0A7S2YG43_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YG43_9STRA)

HSP 1 Score: 193 bits (491), Expect = 2.380e-61
Identity = 92/117 (78.63%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:   28 SLVISPEFQHILRILNTNIDGRRKVMFALTAIGGVGRRFSNLICKKAEVDVNKRAGELTADEIEKLVAIIQNPRQFQIPDWFLNRQKDWKTGKFSQIFSQNIAAKLREDLERLKKIR 378
            SL+   EFQHILRILNTN++G+R V+FA+T IGG+GRRFS+LICKKAEVDVNKRAGELTADEIEK+VA+IQNPRQF+IP WFLNRQKD+KTGK+SQ+F+QNIAA LR+D+ER+KKIR
Sbjct:    4 SLMQGAEFQHILRILNTNVEGKRNVVFAMTKIGGIGRRFSDLICKKAEVDVNKRAGELTADEIEKIVAVIQNPRQFKIPLWFLNRQKDFKTGKYSQVFAQNIAASLRDDVERMKKIR 120
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BLAST of mRNA_P-wetherbeei_contig1965.5.1 vs. uniprot
Match: B7GB86_PHATC (Predicted protein n=4 Tax=Bacillariophyta TaxID=2836 RepID=B7GB86_PHATC)

HSP 1 Score: 193 bits (491), Expect = 2.460e-61
Identity = 93/117 (79.49%), Postives = 110/117 (94.02%), Query Frame = 1 
Query:   28 SLVISPEFQHILRILNTNIDGRRKVMFALTAIGGVGRRFSNLICKKAEVDVNKRAGELTADEIEKLVAIIQNPRQFQIPDWFLNRQKDWKTGKFSQIFSQNIAAKLREDLERLKKIR 378
            SL+  PEFQHILRILNTN++G+R V+F LT I G+GRRFS+LICKKAEVDV+KRAGELTADEIEK+VA+IQNPRQF+IP WFLNRQKD+KTGK+SQ+F+QNIAAKLR+D+ERLKKIR
Sbjct:    4 SLMQGPEFQHILRILNTNVEGKRNVVFGLTKIPGIGRRFSDLICKKAEVDVDKRAGELTADEIEKVVAVIQNPRQFKIPLWFLNRQKDFKTGKYSQVFAQNIAAKLRDDIERLKKIR 120
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BLAST of mRNA_P-wetherbeei_contig1965.5.1 vs. uniprot
Match: B8BTA9_THAPS (RS18, ribosomal protein 18 40S small ribosomal subunit n=11 Tax=Bacillariophyta TaxID=2836 RepID=B8BTA9_THAPS)

HSP 1 Score: 189 bits (480), Expect = 1.170e-59
Identity = 90/117 (76.92%), Postives = 108/117 (92.31%), Query Frame = 1 
Query:   28 SLVISPEFQHILRILNTNIDGRRKVMFALTAIGGVGRRFSNLICKKAEVDVNKRAGELTADEIEKLVAIIQNPRQFQIPDWFLNRQKDWKTGKFSQIFSQNIAAKLREDLERLKKIR 378
            S++  PEFQHILRILNTN++G+R V+F LT I G+GRRF++LICKKAE+DVNKRAGELTADEIEKLVAIIQNPRQF+IP WFLNRQKD+KTGK+SQ+F+QN  AKLR+D+ER+KKIR
Sbjct:    4 SMMQGPEFQHILRILNTNVEGKRNVVFGLTKIKGLGRRFADLICKKAEIDVNKRAGELTADEIEKLVAIIQNPRQFKIPLWFLNRQKDFKTGKYSQVFAQNFDAKLRDDIERMKKIR 120
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BLAST of mRNA_P-wetherbeei_contig1965.5.1 vs. uniprot
Match: A0A0K8RQ59_IXORI (40S ribosomal protein S18 (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A0K8RQ59_IXORI)

HSP 1 Score: 187 bits (475), Expect = 9.280e-59
Identity = 91/118 (77.12%), Postives = 105/118 (88.98%), Query Frame = 1 
Query:   25 QSLVISPEFQHILRILNTNIDGRRKVMFALTAIGGVGRRFSNLICKKAEVDVNKRAGELTADEIEKLVAIIQNPRQFQIPDWFLNRQKDWKTGKFSQIFSQNIAAKLREDLERLKKIR 378
            QSLVI  +FQHILR+LNTNIDGRRKVMFALTAI GVGRRFSN++CKKA+VD+NKRAGELT +E+EKL+ I+ NPRQ++IPDWFLNRQKD K GKFSQ+ S  +  KLREDLERLKKIR
Sbjct:    8 QSLVIPDKFQHILRVLNTNIDGRRKVMFALTAIKGVGRRFSNMVCKKADVDLNKRAGELTEEEVEKLITIMSNPRQYKIPDWFLNRQKDIKDGKFSQVTSNALENKLREDLERLKKIR 125
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1965.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGL2_ECTSI2.420e-6481.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6T5XJF3_9STRA6.330e-6480.51Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S2BE88_9STRA6.110e-6382.05Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6H5KYA8_9PHAE6.310e-6384.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A836C976_9STRA1.050e-6283.62Ribosomal protein S13 n=1 Tax=Tribonema minus TaxI... [more]
F0XYV2_AURAN3.890e-6281.20Uncharacterized protein n=4 Tax=Pelagomonadales Ta... [more]
A0A7S2YG43_9STRA2.380e-6178.63Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
B7GB86_PHATC2.460e-6179.49Predicted protein n=4 Tax=Bacillariophyta TaxID=28... [more]
B8BTA9_THAPS1.170e-5976.92RS18, ribosomal protein 18 40S small ribosomal sub... [more]
A0A0K8RQ59_IXORI9.280e-5977.1240S ribosomal protein S18 (Fragment) n=1 Tax=Ixode... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1965contigP-wetherbeei_contig1965:5629..6167 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LGL2
Preferred nameRPS18
PFAMsRibosomal_S13
Model size381
Max annot lvl2759|Eukaryota
KEGG koko:K02964
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019899,GO:0019900,GO:0019901,GO:0022613,GO:0022626,GO:0022627,GO:0030054,GO:0030312,GO:0030490,GO:0030867,GO:0031090,GO:0031503,GO:0031974,GO:0031981,GO:0031984,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042254,GO:0042274,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048519,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0051726,GO:0055044,GO:0060255,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097064,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098805,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons2
Evalue3.97e-65
EggNOG OGsCOG0099@1|root,KOG3311@2759|Eukaryota
Ec32 ortholog description30s ribosomal protein S13, C-terminal
Ec32 orthologEc-10_002620.1
DescriptionrRNA binding
Cds size381
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186178.196087-CDS-P-wetherbeei_contig1965:5628..58161683186178.196087-CDS-P-wetherbeei_contig1965:5628..5816Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1965 5629..5816 +
1683186178.2089064-CDS-P-wetherbeei_contig1965:5974..61671683186178.2089064-CDS-P-wetherbeei_contig1965:5974..6167Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1965 5975..6167 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1965.5.1prot_P-wetherbeei_contig1965.5.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1965 5629..6167 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1965.5.1

>prot_P-wetherbeei_contig1965.5.1 ID=prot_P-wetherbeei_contig1965.5.1|Name=mRNA_P-wetherbeei_contig1965.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=127bp
MLARCSPPQSLVISPEFQHILRILNTNIDGRRKVMFALTAIGGVGRRFSN
LICKKAEVDVNKRAGELTADEIEKLVAIIQNPRQFQIPDWFLNRQKDWKT
GKFSQIFSQNIAAKLREDLERLKKIR*
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mRNA from alignment at P-wetherbeei_contig1965:5629..6167+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1965.5.1 ID=mRNA_P-wetherbeei_contig1965.5.1|Name=mRNA_P-wetherbeei_contig1965.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=539bp|location=Sequence derived from alignment at P-wetherbeei_contig1965:5629..6167+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTGCGCGCTGCTCGCCTCCACAGTCGCTGGTTATCTCGCCAGAGTT
CCAGCATATTCTGCGTATTCTCAACACCAACATCGATGGCCGGCGGAAGG
TCATGTTCGCGCTGACAGCCATTGGCGGCGTCGGACGCCGATTCTCTAAC
CTCATCTGCAAAAAGGCTGAGGTGGACGTCAACAAGCGGTGCGTGTACTC
ATAACCGGTATCCGTTTAGCGCATTGCGTCCCTCGAATTTATTTCAGGAT
GCAACGCACTCTTTTATCTTCTCAACCTGTGTTTCACGATGAGCTTTAGA
GTTCGCGCTTTCTGCCTGCGTTGCTTACTTCTTCAAACTCGTGCAGCGCC
GGCGAGCTTACGGCGGACGAGATCGAGAAACTGGTGGCGATCATCCAGAA
CCCGCGGCAGTTCCAGATCCCCGACTGGTTCCTCAACAGGCAGAAGGACT
GGAAGACGGGCAAGTTCAGCCAGATCTTCTCGCAGAACATCGCCGCCAAG
CTCCGCGAGGATCTCGAGCGGCTCAAGAAGATCCGGTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1965:5629..6167+

>mRNA_P-wetherbeei_contig1965.5.1 ID=mRNA_P-wetherbeei_contig1965.5.1|Name=mRNA_P-wetherbeei_contig1965.5.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=381bp|location=Sequence derived from alignment at P-wetherbeei_contig1965:5629..6167+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTGCGCGCTGCTCGCCTCCACAGTCGCTGGTTATCTCGCCAGAGTT
CCAGCATATTCTGCGTATTCTCAACACCAACATCGATGGCCGGCGGAAGG
TCATGTTCGCGCTGACAGCCATTGGCGGCGTCGGACGCCGATTCTCTAAC
CTCATCTGCAAAAAGGCTGAGGTGGACGTCAACAAGCGCGCCGGCGAGCT
TACGGCGGACGAGATCGAGAAACTGGTGGCGATCATCCAGAACCCGCGGC
AGTTCCAGATCCCCGACTGGTTCCTCAACAGGCAGAAGGACTGGAAGACG
GGCAAGTTCAGCCAGATCTTCTCGCAGAACATCGCCGCCAAGCTCCGCGA
GGATCTCGAGCGGCTCAAGAAGATCCGGTGA
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