mRNA_P-wetherbeei_contig19631.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19631.1.1
Unique NamemRNA_P-wetherbeei_contig19631.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig19631.1.1 vs. uniprot
Match: A0A7S2CWS8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CWS8_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.340e-14
Identity = 42/76 (55.26%), Postives = 52/76 (68.42%), Query Frame = 2 
Query:  266 RSQDDDNVEIWYLMGTAFYRQNPPDLALAHSHLTRASEMLAKNAEVAAQAGEPFDGEKQARLVAEQLQLVTVAEKE 493
            + +DD+NVEIW+LMG  FY+Q+PPDL LA+ +L RA EML K  E   Q  EPF  E Q RLV EQ++LV  A  E
Sbjct:  262 KREDDENVEIWFLMGVGFYQQSPPDLTLAYEYLERAKEMLEKVREALLQENEPFPYEVQLRLVGEQMKLVEAAALE 337
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BLAST of mRNA_P-wetherbeei_contig19631.1.1 vs. uniprot
Match: A0A7S2STM7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STM7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 9.040e-14
Identity = 40/74 (54.05%), Postives = 50/74 (67.57%), Query Frame = 2 
Query:  272 QDDDNVEIWYLMGTAFYRQNPPDLALAHSHLTRASEMLAKNAEVAAQAGEPFDGEKQARLVAEQLQLVTVAEKE 493
            +DD+NVEIW+LMG AF++Q P DL L+ ++L +A EML K      Q GE F  E Q RLV EQL+LV  AE E
Sbjct:   29 EDDENVEIWFLMGVAFFQQTPADLQLSRTYLEKAGEMLEKVRSSMLQEGEEFPYEAQVRLVREQLELVQQAEAE 102
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BLAST of mRNA_P-wetherbeei_contig19631.1.1 vs. uniprot
Match: A0A7S2CB01_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CB01_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 4.620e-11
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 2 
Query:  272 QDDDNVEIWYLMGTAFYRQNPPDLALAHSHLTRASEMLAKNAEVAAQAGEPFDGEKQARLVAEQLQLVTVAEKEG 496
            +DD+NVEIW+LMG AFY+Q+PPDL LA  +L +A  ML  +A   A  GE F  E Q  LV EQLQLV     EG
Sbjct:   98 EDDENVEIWFLMGVAFYQQSPPDLELAKEYLEKARTML--DALRTAMLGEEFPYEDQVLLVNEQLQLVEKGIMEG 170
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BLAST of mRNA_P-wetherbeei_contig19631.1.1 vs. uniprot
Match: A0A7S2UUY4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UUY4_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 4.020e-10
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  272 QDDDNVEIWYLMGTAFYRQNPPDLALAHSHLTRASEMLAKNAEVAAQAGEPFDGEKQARLVAEQLQLVTVAE 487
            +DD+NVEIWYLMG A Y+  PPDL  A ++L  A++ML K  E +  + E F  ++Q +LV +QL L++ AE
Sbjct:   46 EDDENVEIWYLMGVALYKMEPPDLEEARTNLETAAQMLLKIEEQSNASEEEFHYQEQKQLVEQQLHLISEAE 117
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BLAST of mRNA_P-wetherbeei_contig19631.1.1 vs. uniprot
Match: D8LE28_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE28_ECTSI)

HSP 1 Score: 62.8 bits (151), Expect = 9.240e-8
Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 2 
Query:  272 QDDDNVEIWYLMGTAFYRQNPPDLALAHSHLTRASEMLAKNAEVAAQAGEPFDGEKQARLVAEQLQLVTVAEKE 493
            +DD+NVE+WYLM  AF    PPD   A +HL  A+EML+K        GE F  E Q +LV EQL+   + E +
Sbjct:  271 EDDENVELWYLMAVAFNSLQPPDCESARAHLNTAAEMLSKIRTAQEDMGEEFAFEDQVQLVQEQLEATALLESK 344
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BLAST of mRNA_P-wetherbeei_contig19631.1.1 vs. uniprot
Match: A0A835ZAV8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.310e-7
Identity = 39/84 (46.43%), Postives = 51/84 (60.71%), Query Frame = 2 
Query:  272 QDDDNVEIWYLMGTAFYRQNPPDLALAHSHLTRASEMLAKNAEV-------------AAQAGEPFDGEKQARLVAEQLQLVTVA 484
            +DD++VE W+LMG AF++Q+PPDL LA +HL RA+EML K  E              +AQ   P++G  Q  LV EQL LV  A
Sbjct:  290 EDDEDVETWFLMGAAFFKQDPPDLELARAHLERAAEMLEKIREHMRKERRSGNRGGGSAQFVFPYEG--QVALVREQLALVAEA 371
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19631.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7S2CWS8_9STRA1.340e-1455.26Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2STM7_9STRA9.040e-1454.05Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2CB01_9STRA4.620e-1154.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2UUY4_9STRA4.020e-1047.22Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D8LE28_ECTSI9.240e-844.59Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZAV8_9STRA1.310e-746.43Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19631contigP-wetherbeei_contig19631:57..1106 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LE28
PFAMsTPR_16,TPR_8
Model size752
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0019538,GO:0019941,GO:0030163,GO:0030433,GO:0033554,GO:0034976,GO:0036503,GO:0042221,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0050896,GO:0051603,GO:0051716,GO:0071704,GO:1901564,GO:1901565,GO:1901575,GO:1901698
Exons2
Evalue1.71e-09
EggNOG OGs28JWA@1|root,2QSAH@2759|Eukaryota
Descriptionribosome biogenesis
Cds size444
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186177.6878386-UTR-P-wetherbeei_contig19631:56..2821683186177.6878386-UTR-P-wetherbeei_contig19631:56..282Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19631 57..282 +
1683186177.73028-UTR-P-wetherbeei_contig19631:1024..11061683186177.73028-UTR-P-wetherbeei_contig19631:1024..1106Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19631 1025..1106 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186177.713046-CDS-P-wetherbeei_contig19631:282..4981683186177.713046-CDS-P-wetherbeei_contig19631:282..498Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19631 283..498 +
1683186177.722597-CDS-P-wetherbeei_contig19631:796..10241683186177.722597-CDS-P-wetherbeei_contig19631:796..1024Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19631 797..1024 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19631.1.1prot_P-wetherbeei_contig19631.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19631 283..1024 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19631.1.1

>prot_P-wetherbeei_contig19631.1.1 ID=prot_P-wetherbeei_contig19631.1.1|Name=mRNA_P-wetherbeei_contig19631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=148bp
MSLCLFCCLKPVPRSQDDDNVEIWYLMGTAFYRQNPPDLALAHSHLTRAS
EMLAKNAEVAAQAGEPFDGEKQARLVAEQLQLVTVAEKEGLGAIDGDSDS
GADSDDDGDGGGGGAGVGGGEREIDGNDAFKGKVARRRCTEADNMDL*
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mRNA from alignment at P-wetherbeei_contig19631:57..1106+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19631.1.1 ID=mRNA_P-wetherbeei_contig19631.1.1|Name=mRNA_P-wetherbeei_contig19631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1050bp|location=Sequence derived from alignment at P-wetherbeei_contig19631:57..1106+ (Phaeothamnion wetherbeei SAG_119_79)
CTACTTCTTACCCCGATGTTGACCTGGGCGGCAGGCACTGGAGGTCCTGA
GCGGTCTGCTTCAGGAGGTAAGGACCGTTGGTACAGAGGGCCGGTCGGGA
GTTTCATGGTGGAGGATTTTGTTCGCTTGATGTACATTGTTCTCTTCTTT
GCGATTGTTCAGCACCCCAGATTGAAACTTTATCCCCTTCCATTCCTCCG
GCGATGTCTTTGCTGCTTGGGATACCATGTCTCTTTGCCTTTTTTGTTGC
TTGAAACCGGTACCCCGTTCACAGGACGACGATAACGTGGAGATTTGGTA
CCTGATGGGCACGGCCTTCTACCGGCAGAACCCGCCGGACCTCGCCCTTG
CCCACTCGCATTTGACACGGGCGTCGGAGATGCTCGCCAAGAACGCGGAG
GTCGCCGCACAGGCCGGGGAGCCCTTCGACGGCGAGAAGCAGGTGCGATT
TGTCAGGAGGTAGAAAGATTGACTTAGCGATAGTTGCGCAGGAAGGGTAT
CTCTACCTTGGATTTGTGTAGCTTTGCTTATCTGTGCTGCTTATGCGACC
GTGTGGTGTACGTTCAGGTCTGCCTTCCGGTTTCTGGTTCCCTTCGCAGG
TTTTGGTGCGGTTTCCGGCCTGCTCCTTTCCTTGCGACAGAACTGTTTTT
CCTCTCTCCTCTTTCCTCCTGATTTTGACGTTGTGGCTTTCTTGCTCCTC
TTGCCCTGTCCCGCTTCCTGCCGTTGTGGTTTGATTGCAGGCGCGGTTGG
TGGCTGAGCAGCTGCAGCTCGTAACGGTTGCGGAGAAGGAGGGTCTCGGC
GCCATCGATGGCGACAGCGATAGTGGCGCCGATAGCGACGACGATGGGGA
TGGTGGTGGTGGCGGTGCTGGCGTTGGTGGCGGCGAGAGAGAGATTGACG
GAAATGACGCCTTCAAGGGAAAAGTGGCGCGCAGGCGTTGCACTGAAGCA
GATAATATGGACCTTTGATGTTGTGCTTCAAGTTCTGTGTGTGTGAGCTG
TCAGATATCCCCGCTTTCATTCCAAACTGGTCTCAAACATCTTTGGCGGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19631:57..1106+

>mRNA_P-wetherbeei_contig19631.1.1 ID=mRNA_P-wetherbeei_contig19631.1.1|Name=mRNA_P-wetherbeei_contig19631.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=444bp|location=Sequence derived from alignment at P-wetherbeei_contig19631:57..1106+ (Phaeothamnion wetherbeei SAG_119_79)
ATGTCTCTTTGCCTTTTTTGTTGCTTGAAACCGGTACCCCGTTCACAGGA
CGACGATAACGTGGAGATTTGGTACCTGATGGGCACGGCCTTCTACCGGC
AGAACCCGCCGGACCTCGCCCTTGCCCACTCGCATTTGACACGGGCGTCG
GAGATGCTCGCCAAGAACGCGGAGGTCGCCGCACAGGCCGGGGAGCCCTT
CGACGGCGAGAAGCAGGCGCGGTTGGTGGCTGAGCAGCTGCAGCTCGTAA
CGGTTGCGGAGAAGGAGGGTCTCGGCGCCATCGATGGCGACAGCGATAGT
GGCGCCGATAGCGACGACGATGGGGATGGTGGTGGTGGCGGTGCTGGCGT
TGGTGGCGGCGAGAGAGAGATTGACGGAAATGACGCCTTCAAGGGAAAAG
TGGCGCGCAGGCGTTGCACTGAAGCAGATAATATGGACCTTTGA
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