mRNA_P-wetherbeei_contig19617.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19617.1.1
Unique NamemRNA_P-wetherbeei_contig19617.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Match: A0A835YL62_9STRA (RING-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL62_9STRA)

HSP 1 Score: 192 bits (488), Expect = 8.990e-51
Identity = 128/303 (42.24%), Postives = 167/303 (55.12%), Query Frame = 1
Query:    1 THGTFEALSPVDPQSLAQLRSMGFSEGMCLQALRRGGSVEDAVNWLFQQSTSGGSGDTNGXXXXXXXXXXXASTARGRAPDAVTPVSGLPFVLCSAEEASLLHAAAGRLVNEAELVAAASTAVARLGTGAADRSGGSXXXXXXXTVTAVSGVIGDAGPNLLLRAFRSPIFQSVLNVTAMRPEFLPDLIRHSLPREWTAAAVGGDGDGGVGARIAVLWTPGRGGHPDAAWFRKFWAYLSRRCPHALAFFAESWPVVPTNEGVVCSLSVRAAVVASELLDDNVRHLLVALGGRTLMGGLFQAEAG 909
            ++G F+ +  +     A LR+MGF+EG CL+A     +++DAVNWL     +  +                A  A  RA  +V      P++L S EE +LL  A  RL++EA L               ++ + G  XXXXXX      G  G A   LL R FRS  FQ+ LNV ++R +FLPDL+  SLPR W         +GG GA ++  WTP +GGHP A WFR  W Y +RRCP A+  FAESWPVVPTNEG VC LS+R+AVV+++ LD  VR LL   G  TL+ GLF AEAG
Sbjct:  631 SYGCFQTVGALHKDHAA-LRAMGFTEGQCLRAFTHCDTLQDAVNWLMADDNAEAA----------------AVAAPQRASTSVA-AGAEPYLLASGEEVALLTGAGSRLISEAAL---------------SESAAGGRXXXXXXXXXXARGAEGHA---LLRRVFRSAAFQATLNVASLRADFLPDLVALSLPRAWR--------EGGEGA-VSWPWTPAQGGHPGADWFRALWRYFARRCPDAVGAFAESWPVVPTNEGRVCRLSLRSAVVSADGLDAGVRALLRRAGALTLLAGLFDAEAG 888          
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Match: D8LJG5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJG5_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 5.590e-34
Identity = 78/164 (47.56%), Postives = 100/164 (60.98%), Query Frame = 1
Query:  433 TVTAVSGVIGDAGPN--LLLRAFRSPIFQSVLNVTAMRPEFLPDLIRHSLPREWTAAAVGGDGDGGVGARIAVLWTPGRGGHPDAAWFRKFWAYLSRRCPHALAFFAESWPVVPTNEGVVCSLSVRAAVVASELLDDNVRHLLVALGGRTLMGGLFQAEAGPAA 918
            T  A +G +  AG +   +LRA RSP  QS L+VT MR + LPDLI  +LP EW  A   G G    G+  A  WTPG+ GHPD  WFR+ W YL+   P A+   AES+PVVPT   VVC LS+R+AV+  + L  +VR++LV  G RTL+ G+F    G AA
Sbjct:   83 TAGAAAGRVRTAGEDDGRVLRALRSPALQSALHVTTMRDDLLPDLIGQTLPPEWRGAGAAGGG----GSSTAFPWTPGKSGHPDVDWFRRLWGYLASSRPTAVRLLAESYPVVPTGNSVVCPLSLRSAVIDGDRLGKDVRNILVGAGCRTLLPGVFARGVGDAA 242          
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Match: A0A6H5K4B9_9PHAE (UBA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4B9_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 7.190e-33
Identity = 75/147 (51.02%), Postives = 92/147 (62.59%), Query Frame = 1
Query:  481 LLRAFRSPIFQSVLNVTAMRPEFLPDLIRHSLPREWTAA-AVGGDGDGGVGARIAVLWTPGRGGHPDAAWFRKFWAYLSRRCPHALAFFAESWPVVPTNEGVVCSLSVRAAVVASELLDDNVRHLLVALGGRTLMGGLFQAEAGPAA 918
            +LRA RSP  QS LNVT MR + LPDLI  +LP EW  A A GGD      +  A  WTPG+ GHPD  WFR+ W YL+   P A+   AES+PVVPT   VVC LS+R+AV+    L  +VR++LV  G RTL+ G+F    G AA
Sbjct:  468 VLRALRSPALQSALNVTTMRDDLLPDLIGQTLPPEWRGAVAAGGDS-----SSTAFPWTPGKSGHPDVDWFRRLWGYLASSRPTAVRLLAESYPVVPTGNSVVCPLSLRSAVIDGGRLSKDVRNILVGAGCRTLLPGVFARGVGDAA 609          
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Match: A0A7S2UBA9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UBA9_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 8.460e-9
Identity = 43/148 (29.05%), Postives = 70/148 (47.30%), Query Frame = 1
Query:  478 LLLRAFRSPIFQSVLNVTAMRPEFLPDLIRHSLPREWTAAAVGGDGDGGVGARIAVLWTPGR----GGHPDAAWFRKFWAYL--SRRCPHALAFFAESWPVVPTNEGVVCSLSVRAAVVASELLDDNVRHLLVALGGRTLMGGLFQAE 903
            ++ + F S    ++LNV  +  + L D++   +P +W     G D         +  W P         P   WF++ W Y+  S     +L   AE + +VPT EGVVCSLS  ++V+ +  L   V+  +V+LGGRT   G+   +
Sbjct:  210 IVRKFFSSEEVATLLNVVPLVSDMLADVVSRVIPADWK----GSD---------SAPWNPSSCDSDASIPSQEWFKRLWRYICSSSGGGDSLGLIAEQFCIVPTQEGVVCSLSPGSSVMDASKLSHQVKEAVVSLGGRTFCEGVLPTD 344          
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Match: A0A1V9ZU53_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZU53_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 6.190e-8
Identity = 45/140 (32.14%), Postives = 60/140 (42.86%), Query Frame = 1
Query:  502 PIFQSV---LNVTAMRPEFLPDLIRHSLPREWTAAAVGGDGDGGVGARIAVLWTPGRGGHPDAAWFRKFWAYLSRRCPHALAFFAESWPVVPTNEGVVCSLSVRAAVVASELLDDNVRHLLVALGGRTLMGGLFQAEAGP 912
            P+  S+   LNV  M    L D +   LP  W   A              V W       P  AWF+  WAY+    P  L    E+WP+VPT  GV CSL  R+A++    L  ++  +L+ +G   L   LF AE  P
Sbjct:  655 PVLHSIATSLNVQQMSVHDLSDFLPLVLPAHWARQA-------------RVEWALDTTDVPTFAWFQDLWAYIGNT-PAVLDELQETWPLVPTQNGVACSLRRRSAILHPAWLAPSIVAILLRVGVDMLASDLFVAEVAP 780          
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Match: A0A835YPX6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPX6_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 5.060e-7
Identity = 38/93 (40.86%), Postives = 51/93 (54.84%), Query Frame = 1
Query:  541 PEFLPDLIRHSLPREWTAAAVGGDGDGGVGARIAVLWTPGRGGHPDAAWFRKFWAYLSRRCPHALAFFAESWPVVPTNEGVVCSLSVRAAVVA 819
            PE    L+R++  R          GDG   AR+  L + G     D A     W YLS+RCP A+ FFAE+WP+VPT+E  VC LS+R+  +A
Sbjct:  398 PEMRATLLRNACER----------GDGA--ARVQSLLSKGAVWPNDLA--ELLWRYLSKRCPKAVNFFAEAWPIVPTDERRVCRLSLRSPTLA 476          
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Match: A0A1W0A4K0_9STRA (UBA domain-containing protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A4K0_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.300e-5
Identity = 33/112 (29.46%), Postives = 51/112 (45.54%), Query Frame = 1
Query:  523 NVTAMRPEFLPDLIRHSLPREWTAAAVGGDGDGGVGARIAVLWTPGRGGHPDAAWFRKFWAYLSRRCPHALAFFAESWPVVPTNEGVVCSLSVRAAVVASELLDDNVRHLLV 858
            N+  M    L D +  +LP  W+              +  V W+P     P   WF+  WAY+    P AL    ESWP+VPT  GVVC+L   ++++ +  L   +  +L+
Sbjct:  665 NIQQMSVADLRDFLPVALPGTWSG-------------QTRVNWSPESTDLPTFQWFQDLWAYIGSS-PKALEDLEESWPIVPTQSGVVCTLRRHSSILHTAWLAPTLIDILL 762          
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Match: A0A067CGM9_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CGM9_SAPPC)

HSP 1 Score: 56.6 bits (135), Expect = 5.590e-5
Identity = 35/128 (27.34%), Postives = 55/128 (42.97%), Query Frame = 1
Query:  520 LNVTAMRPEFLPDLIRHSLPREWTAAAVGGDGDGGVGARIAVLWTPGRGGHPDAAWFRKFWAYLSRRCPHALAFFAESWPVVPTNEGVVCSLSVRAAVVASELLDDNVRHLLVALGGRTLMGGLFQAE 903
            +NV  M  + L D     LP  W   +              V W+      P  AWF+  WAY+    P  L    + WP+VPT  G VCSL  +++++ +  L  ++  +L+ +    L   LF+ E
Sbjct:  655 VNVQVMGVQDLGDFFPLVLPPHWARQS-------------RVAWSIDATDLPTLAWFQDLWAYIGNS-PSTLLDLCDQWPIVPTQNGAVCSLRKQSSILHTAWLAPSIVAILLRMQVDVLAHDLFRTE 768          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19617.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A835YL62_9STRA8.990e-5142.24RING-type domain-containing protein n=1 Tax=Tribon... [more]
D8LJG5_ECTSI5.590e-3447.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K4B9_9PHAE7.190e-3351.02UBA domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2UBA9_9STRA8.460e-929.05Hypothetical protein (Fragment) n=2 Tax=Attheya se... [more]
A0A1V9ZU53_9STRA6.190e-832.14Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A835YPX6_9STRA5.060e-740.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1W0A4K0_9STRA2.300e-529.46UBA domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A067CGM9_SAPPC5.590e-527.34Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19617contigP-wetherbeei_contig19617:128..1191 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LJG5
PFAMszf-C3HC4_3
Model size1066
Max annot lvl2759|Eukaryota
KEGG koko:K17592
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0006457,GO:0008150,GO:0009987,GO:0030424,GO:0030425,GO:0030544,GO:0031072,GO:0036477,GO:0042995,GO:0043005,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044087,GO:0044424,GO:0044444,GO:0044463,GO:0044464,GO:0044877,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051087,GO:0051128,GO:0051129,GO:0065007,GO:0070628,GO:0070852,GO:0090083,GO:0090084,GO:0097447,GO:0097458,GO:0120025,GO:0120038
Exons1
Evalue9.17e-35
EggNOG OGs28IDA@1|root,2QQPY@2759|Eukaryota
Descriptionnegative regulation of inclusion body assembly
Cds size1062
COG categoryS
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186177.3672333-CDS-P-wetherbeei_contig19617:127..11891683186177.3672333-CDS-P-wetherbeei_contig19617:127..1189Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19617 128..1189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19617.1.1prot_P-wetherbeei_contig19617.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19617 128..1189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19617.1.1

>prot_P-wetherbeei_contig19617.1.1 ID=prot_P-wetherbeei_contig19617.1.1|Name=mRNA_P-wetherbeei_contig19617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=354bp
THGTFEALSPVDPQSLAQLRSMGFSEGMCLQALRRGGSVEDAVNWLFQQS
TSGGSGDTNGSGRGGGGSSRSASTARGRAPDAVTPVSGLPFVLCSAEEAS
LLHAAAGRLVNEAELVAAASTAVARLGTGAADRSGGSGSGGRGGTVTAVS
GVIGDAGPNLLLRAFRSPIFQSVLNVTAMRPEFLPDLIRHSLPREWTAAA
VGGDGDGGVGARIAVLWTPGRGGHPDAAWFRKFWAYLSRRCPHALAFFAE
SWPVVPTNEGVVCSLSVRAAVVASELLDDNVRHLLVALGGRTLMGGLFQA
EAGPAAARGSAAAAAGATGAVASVPAGRPAGAWAGIAPAPCGPDGADGVL
LALA
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mRNA from alignment at P-wetherbeei_contig19617:128..1191+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19617.1.1 ID=mRNA_P-wetherbeei_contig19617.1.1|Name=mRNA_P-wetherbeei_contig19617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1064bp|location=Sequence derived from alignment at P-wetherbeei_contig19617:128..1191+ (Phaeothamnion wetherbeei SAG_119_79)
ACCCACGGCACGTTCGAGGCGCTTTCTCCTGTCGACCCGCAAAGCCTTGC CCAGCTACGCAGCATGGGCTTCTCCGAAGGCATGTGCCTCCAGGCTCTTC GCCGCGGCGGCTCCGTCGAAGACGCCGTCAACTGGCTCTTCCAGCAGAGC ACCAGCGGCGGCAGCGGTGACACTAATGGCAGCGGCCGCGGCGGCGGCGG TAGCAGCCGCTCGGCATCGACGGCGAGGGGAAGGGCCCCGGATGCAGTGA CGCCGGTCAGCGGCTTGCCGTTTGTGCTCTGCTCCGCCGAGGAAGCGAGC CTCTTGCACGCCGCCGCCGGCCGGCTGGTTAATGAGGCTGAGCTGGTGGC AGCTGCCTCCACCGCTGTAGCCAGACTGGGCACCGGAGCTGCCGACCGGA GCGGCGGCAGCGGCAGCGGCGGCCGCGGCGGCACCGTAACGGCGGTGTCT GGCGTGATCGGTGACGCCGGCCCCAACCTGCTGCTCCGGGCCTTCCGCTC GCCGATCTTCCAGAGCGTCCTCAACGTGACCGCAATGCGACCGGAGTTCC TTCCAGACCTCATCCGCCACAGCCTGCCGCGCGAGTGGACCGCCGCCGCC GTCGGCGGCGACGGCGACGGCGGCGTCGGCGCCCGCATCGCCGTGTTGTG GACACCGGGACGTGGCGGGCACCCGGACGCCGCCTGGTTTCGAAAGTTTT GGGCGTACCTCTCGCGGCGGTGTCCGCATGCCCTGGCGTTCTTCGCCGAG TCGTGGCCCGTGGTGCCGACCAACGAGGGCGTCGTTTGCAGCCTCAGCGT GCGGGCGGCTGTGGTGGCGTCCGAGCTGCTCGATGACAACGTCCGCCACC TGCTGGTGGCGCTCGGCGGTCGGACGCTCATGGGCGGTCTCTTTCAGGCG GAAGCAGGGCCGGCAGCCGCCCGTGGCAGCGCCGCCGCAGCTGCTGGCGC TACAGGAGCAGTGGCATCGGTGCCGGCGGGGAGGCCAGCAGGGGCATGGG CGGGAATCGCACCGGCGCCTTGCGGCCCGGACGGCGCCGACGGCGTGCTG CTGGCGTTGGCGGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19617:128..1191+

>mRNA_P-wetherbeei_contig19617.1.1 ID=mRNA_P-wetherbeei_contig19617.1.1|Name=mRNA_P-wetherbeei_contig19617.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1062bp|location=Sequence derived from alignment at P-wetherbeei_contig19617:128..1191+ (Phaeothamnion wetherbeei SAG_119_79)
ACCCACGGCACGTTCGAGGCGCTTTCTCCTGTCGACCCGCAAAGCCTTGC
CCAGCTACGCAGCATGGGCTTCTCCGAAGGCATGTGCCTCCAGGCTCTTC
GCCGCGGCGGCTCCGTCGAAGACGCCGTCAACTGGCTCTTCCAGCAGAGC
ACCAGCGGCGGCAGCGGTGACACTAATGGCAGCGGCCGCGGCGGCGGCGG
TAGCAGCCGCTCGGCATCGACGGCGAGGGGAAGGGCCCCGGATGCAGTGA
CGCCGGTCAGCGGCTTGCCGTTTGTGCTCTGCTCCGCCGAGGAAGCGAGC
CTCTTGCACGCCGCCGCCGGCCGGCTGGTTAATGAGGCTGAGCTGGTGGC
AGCTGCCTCCACCGCTGTAGCCAGACTGGGCACCGGAGCTGCCGACCGGA
GCGGCGGCAGCGGCAGCGGCGGCCGCGGCGGCACCGTAACGGCGGTGTCT
GGCGTGATCGGTGACGCCGGCCCCAACCTGCTGCTCCGGGCCTTCCGCTC
GCCGATCTTCCAGAGCGTCCTCAACGTGACCGCAATGCGACCGGAGTTCC
TTCCAGACCTCATCCGCCACAGCCTGCCGCGCGAGTGGACCGCCGCCGCC
GTCGGCGGCGACGGCGACGGCGGCGTCGGCGCCCGCATCGCCGTGTTGTG
GACACCGGGACGTGGCGGGCACCCGGACGCCGCCTGGTTTCGAAAGTTTT
GGGCGTACCTCTCGCGGCGGTGTCCGCATGCCCTGGCGTTCTTCGCCGAG
TCGTGGCCCGTGGTGCCGACCAACGAGGGCGTCGTTTGCAGCCTCAGCGT
GCGGGCGGCTGTGGTGGCGTCCGAGCTGCTCGATGACAACGTCCGCCACC
TGCTGGTGGCGCTCGGCGGTCGGACGCTCATGGGCGGTCTCTTTCAGGCG
GAAGCAGGGCCGGCAGCCGCCCGTGGCAGCGCCGCCGCAGCTGCTGGCGC
TACAGGAGCAGTGGCATCGGTGCCGGCGGGGAGGCCAGCAGGGGCATGGG
CGGGAATCGCACCGGCGCCTTGCGGCCCGGACGGCGCCGACGGCGTGCTG
CTGGCGTTGGCG
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