mRNA_P-wetherbeei_contig1960.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1960.1.1
Unique NamemRNA_P-wetherbeei_contig1960.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1960.1.1 vs. uniprot
Match: D7G361_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G361_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 5.010e-8
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 DFCVRQKRGCDGGHPTCEQCRKRGMPCAYSRRRKSGPR 114
            ++CV  KRGC GG P C+QC KRG PC Y++RRKSGPR
Sbjct:   21 NYCVSSKRGCSGGEP-CDQCEKRGKPCIYAQRRKSGPR 57
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1960.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G361_ECTSI5.010e-865.79Zn(2)-C6 fungal-type domain-containing protein n=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1960contigP-wetherbeei_contig1960:782..1560 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog710243.XP_007602923.1
PFAMsFungal_trans,Zn_clus
Model size264
Max annot lvl4751|Fungi
Hectar predicted targeting categorysignal anchor
Exons2
Evalue1.07e-05
EggNOG OGs2D1BN@1|root,2SHHD@2759|Eukaryota,3AEKJ@33154|Opisthokonta,3PAU0@4751|Fungi,3R2F6@4890|Ascomycota,21E9B@147550|Sordariomycetes,1F1IT@1028384|Glomerellales
DescriptionFungal specific transcription factor domain-containing protein
Cds size264
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186177.1816444-CDS-P-wetherbeei_contig1960:781..9071683186177.1816444-CDS-P-wetherbeei_contig1960:781..907Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1960 782..907 -
1683186177.193037-CDS-P-wetherbeei_contig1960:1422..15601683186177.193037-CDS-P-wetherbeei_contig1960:1422..1560Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1960 1423..1560 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1960.1.1prot_P-wetherbeei_contig1960.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1960 782..1560 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1960.1.1

>prot_P-wetherbeei_contig1960.1.1 ID=prot_P-wetherbeei_contig1960.1.1|Name=mRNA_P-wetherbeei_contig1960.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=88bp
DFCVRQKRGCDGGHPTCEQCRKRGMPCAYSRRRKSGPRLFAGKAKPPGAR
RRQPRPRHLGPRAAAAAAAAAAAAAVAPAAALAGSAG*
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mRNA from alignment at P-wetherbeei_contig1960:782..1560-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1960.1.1 ID=mRNA_P-wetherbeei_contig1960.1.1|Name=mRNA_P-wetherbeei_contig1960.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=779bp|location=Sequence derived from alignment at P-wetherbeei_contig1960:782..1560- (Phaeothamnion wetherbeei SAG_119_79)
GACTTTTGCGTACGCCAGAAGCGCGGCTGCGACGGCGGCCATCCGACGTG
TGAGCAATGTCGAAAGCGCGGCATGCCCTGTGCTTACTCGCGCCGGCGCA
AGTCCGGTCCCCGGCTCTTTGCCGGCAAGGCCAAGCCGGTTTCTAACTTT
TGCCCGGTCCATGACGCGCCCCCGCCGCCACCGGGCCCCAAAAAGCGCGG
ACGGAAGCCCATGTGCCGCTGCCCCGGCGCGCCGGCGGCGGGTGCCGCGG
CGGCAGCCACTGCGGCGGCAGCCGCCGGCCACGACGGCGCGGCGGCCGGA
GAACTCATGGCGGACGCCGCCAGAGCGTGCCCCAGCCGCTTCGGGCGGGC
GCTCTCCACGCGGAGCAGCGCGGCGCATCGCCCCGTGGCATATGCGGAGT
CTGAAGGCGAAAGCGACGGCGATGATGACGGCGATGTCAGCAGCGTCGCC
ACCGGGGATGACGAGGGCTCTTACTATGACGCGGCGGCTCATCGGGCGGC
GGCGCTTTCGCCGCCCTCCGATTACACGACCAGCGCGAGCGACTATGAGA
GCGACGCCGAGGAGCCCCCCTCGAAGAAGCGGTTCACGAGGCGCCCCGCT
CCCCGCACCGGCGCGGTCCTCCCGCGTGTCGTAGCGTTCCCGGCCGTTCC
GAGCCTGGGGCGCGGCGCCGCCAGCCGCGACCGCGCCATCTCGGGCCTCG
TGCGGCCGCAGCCGCCGCAGCCGCCGCTGCCGCTGCCGCCGTCGCACCTG
CGGCAGCCCTCGCTGGGTCGGCTGGGTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1960:782..1560-

>mRNA_P-wetherbeei_contig1960.1.1 ID=mRNA_P-wetherbeei_contig1960.1.1|Name=mRNA_P-wetherbeei_contig1960.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=264bp|location=Sequence derived from alignment at P-wetherbeei_contig1960:782..1560- (Phaeothamnion wetherbeei SAG_119_79)
GACTTTTGCGTACGCCAGAAGCGCGGCTGCGACGGCGGCCATCCGACGTG
TGAGCAATGTCGAAAGCGCGGCATGCCCTGTGCTTACTCGCGCCGGCGCA
AGTCCGGTCCCCGGCTCTTTGCCGGCAAGGCCAAGCCGCCTGGGGCGCGG
CGCCGCCAGCCGCGACCGCGCCATCTCGGGCCTCGTGCGGCCGCAGCCGC
CGCAGCCGCCGCTGCCGCTGCCGCCGTCGCACCTGCGGCAGCCCTCGCTG
GGTCGGCTGGGTAG
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