mRNA_P-wetherbeei_contig19593.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19593.1.1
Unique NamemRNA_P-wetherbeei_contig19593.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19593.1.1 vs. uniprot
Match: A0A7X6NYK0_9ACTN (Methyltransferase domain-containing protein n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7X6NYK0_9ACTN)

HSP 1 Score: 179 bits (453), Expect = 3.900e-54
Identity = 88/166 (53.01%), Postives = 107/166 (64.46%), Query Frame = 1
Query:    1 PMSFDAAYAAADDPWSFTSSAYEMDKYALTISSLARERYARCFEPACSIGALTRRLAERADEVVACDGSPIAVDRARARLADAPHVELVAAAIPEWWPTGTFDLIVLSELGYYWDSAGWSDIVGRCAQSLSADGEVIAVHWLGSSADHVQNGRTVHQELLAVFGPS 498
            P +F++AYA + DPW F  S YE  +Y LT+++L R RY RCFEP CSIG LT RLAE ADEV+ CD SP AV  A  RLA    V +   ++P+WWP GTFDL+V SELGYYWD      +V R    L  +  V+AVHWLG S DH+ +G  VH  L   FGPS
Sbjct:    5 PSTFESAYARSGDPWDFDGSPYEQRRYDLTVAALPRTRYRRCFEPGCSIGVLTERLAEVADEVIGCDPSPSAVASASERLAAHGAVTIEVGSLPQWWPEGTFDLLVFSELGYYWDLGELDSLVERLHTLLRPEAHVVAVHWLGESPDHLLSGEQVHDVLRRRFGPS 170          
BLAST of mRNA_P-wetherbeei_contig19593.1.1 vs. uniprot
Match: A0A317LTP1_9ACTN (Nodulation protein S (NodS) n=4 Tax=unclassified Nocardiopsis TaxID=2649073 RepID=A0A317LTP1_9ACTN)

HSP 1 Score: 174 bits (441), Expect = 3.400e-52
Identity = 96/171 (56.14%), Postives = 115/171 (67.25%), Query Frame = 1
Query:   10 FDAAYAAADDPWSFTSSAYEMDKYALTISSLARERYARCFEPACSIGALTRRLAERADEVVACDGSPIAVDRARARLADAPHVELVAAAIPEWWPTGTFDLIVLSELGYYWDSAGWSDIVGRCAQSLSADGEVIAVHWLGSSADHVQNGRTVHQELLAV--FGPSDLHIER 516
            FD+ YA A DPW F S  YE  K ALTI+SL RERYAR FEP C+IG LT+ LAER DEV+A +  P A  RAR  L  A HVE+V AA+PE WP G FDL+VLSEL YY+D    + +  R A+SL+ DG VIAVHW     DHV++G  VH+ L AV   G + LH+ER
Sbjct:    8 FDSMYAGAADPWGFRSRWYEARKRALTIASLPRERYARAFEPGCAIGVLTKALAERCDEVLAWEVVPEAASRARRDLTGADHVEVVHAAVPEEWPEGDFDLVVLSELLYYFDDTDLATVFARTARSLAGDGTVIAVHWRHPVDDHVRSGDDVHRALDAVPGLGRTVLHVER 178          
BLAST of mRNA_P-wetherbeei_contig19593.1.1 vs. uniprot
Match: UPI001748CCDC (methyltransferase domain-containing protein n=1 Tax=Nocardiopsis terrae TaxID=372655 RepID=UPI001748CCDC)

HSP 1 Score: 164 bits (415), Expect = 2.940e-48
Identity = 84/158 (53.16%), Postives = 109/158 (68.99%), Query Frame = 1
Query:   10 FDAAYAAADDPWSFTSSAYEMDKYALTISSLARERYARCFEPACSIGALTRRLAERADEVVACDGSPIAVDRARARLADAPHVELVAAAIPEWWPTGTFDLIVLSELGYYWDSAGWSDIVGRCAQSLSADGEVIAVHWLGSSADHVQNGRTVHQELLA 483
            F+A YA ++DPW F +  YE  K +LT++ L RERY R FEP  SIG LTR LA+R D ++A +G+P AV RARA LADAPHVE+V A +PE WP G FDL+VLSEL YY+D      ++ R A SL+  G ++AVHW    ADHV++G  VH+ + A
Sbjct:    8 FEALYAGSEDPWGFRTRWYERRKRSLTLACLPRERYVRAFEPGSSIGVLTRGLADRCDSLLAWEGAPEAVARARADLADAPHVEVVRARVPERWPRGAFDLVVLSELLYYFDDGDLGVLLDRTADSLAGGGTLVAVHWRHPVADHVRSGDEVHRAVAA 165          
BLAST of mRNA_P-wetherbeei_contig19593.1.1 vs. uniprot
Match: A0A840W2X8_9ACTN (SAM-dependent methyltransferase n=2 Tax=Nocardiopsis metallicus TaxID=179819 RepID=A0A840W2X8_9ACTN)

HSP 1 Score: 164 bits (414), Expect = 4.160e-48
Identity = 82/154 (53.25%), Postives = 105/154 (68.18%), Query Frame = 1
Query:   10 FDAAYAAADDPWSFTSSAYEMDKYALTISSLARERYARCFEPACSIGALTRRLAERADEVVACDGSPIAVDRARARLADAPHVELVAAAIPEWWPTGTFDLIVLSELGYYWDSAGWSDIVGRCAQSLSADGEVIAVHWLGSSADHVQNGRTVHQ 471
            FDA YA + DPW F +  YE  K  LT+SSL RERYAR FEP C+IG LTR LA R DE++A +G+P A  RARA LAD PHVE+  A +P+ WP G FDL+VLSEL YY+D      ++ +   SL+A+G ++AVHW     DHV++G  VH+
Sbjct:    8 FDAVYAGSQDPWGFRTRWYEQRKRDLTLSSLPRERYARAFEPGCAIGVLTRGLAARCDEILAWEGAPEAAARARADLADLPHVEVTRARVPDAWPQGAFDLVVLSELLYYFDDRDLETLLKQTVDSLAAEGTLVAVHWRHPVEDHVRSGDDVHR 161          
BLAST of mRNA_P-wetherbeei_contig19593.1.1 vs. uniprot
Match: UPI00034DDECD (methyltransferase domain-containing protein n=1 Tax=Nocardiopsis valliformis TaxID=239974 RepID=UPI00034DDECD)

HSP 1 Score: 158 bits (399), Expect = 8.460e-46
Identity = 82/158 (51.90%), Postives = 104/158 (65.82%), Query Frame = 1
Query:   10 FDAAYAAADDPWSFTSSAYEMDKYALTISSLARERYARCFEPACSIGALTRRLAERADEVVACDGSPIAVDRARARLADAPHVELVAAAIPEWWPTGTFDLIVLSELGYYWDSAGWSDIVGRCAQSLSADGEVIAVHWLGSSADHVQNGRTVHQELLA 483
            FDA YA + DPW F S  YE  K +LT++ L RERYAR FEP C+IG LTR LA+R DE++A +G+P A  RARA LAD  HVE+  A +P  WP G FDL+VLSEL YY+D      ++ R   SL A G ++AVHW     DHV++G  VH+ + A
Sbjct:    8 FDAMYAGSSDPWGFRSRWYERRKRSLTLAGLPRERYARAFEPGCAIGVLTRGLADRCDELLAWEGAPEAAARARADLADLLHVEVAQARVPGRWPRGAFDLVVLSELLYYFDDRDLDTLLERSLDSLGAGGTLVAVHWRHPVDDHVRSGDDVHRVIAA 165          
BLAST of mRNA_P-wetherbeei_contig19593.1.1 vs. uniprot
Match: A0A7W0QG56_9ACTN (Methyltransferase domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W0QG56_9ACTN)

HSP 1 Score: 154 bits (389), Expect = 1.980e-44
Identity = 78/157 (49.68%), Postives = 104/157 (66.24%), Query Frame = 1
Query:   10 FDAAYAAADDPWSFTSSAYEMDKYALTISSLARERYARCFEPACSIGALTRRLAERADEVVACDGSPIAVDRARARLADAP----HVELVAAAIPEWWPTGTFDLIVLSELGYYWDSAGWSDIVGRCAQSLSADGEVIAVHWLGSSADHVQNGRTVH 468
            F+A Y    DPW F +S YE  ++ +T++SL   R+ R FEP C+ G LT RL++R DE+VACDGSP  + RAR R+A+A      VEL    IPEWWP+G FDLIVLSE+GYY+D+   S++V R   +L   G ++AVHW G S DH+ +G  VH
Sbjct:    9 FEARYRLDVDPWQFATSEYEQRRFDITVASLPAVRFGRVFEPGCAGGELTVRLSQRCDELVACDGSPTVLRRARQRVAEAADPLCRVELDVGVIPEWWPSGDFDLIVLSEIGYYFDAPALSELVARVEGALVDGGTLLAVHWRGVSEDHLLSGDEVH 165          
BLAST of mRNA_P-wetherbeei_contig19593.1.1 vs. uniprot
Match: A0A1C5A460_9ACTN (Nodulation protein S (NodS) n=4 Tax=Micromonospora TaxID=1873 RepID=A0A1C5A460_9ACTN)

HSP 1 Score: 152 bits (385), Expect = 1.170e-43
Identity = 80/164 (48.78%), Postives = 103/164 (62.80%), Query Frame = 1
Query:   10 FDAAYAAADDPWSFTSSAYEMDKYALTISSLARERYARCFEPACSIGALTRRLAERADEVVACDGSPIAVDRARARLADAPHVELVAAAIPEWWPT---GTFDLIVLSELGYYWDSAGWSDIVGRCAQSLSADGEVIAVHWLGSSADHVQNGRTVHQELLAVFG 492
            FD  YA A+DPW F +  Y+  K+ +T++ L R RY   FEP CS G LTRRLA R D ++A D +  AV  AR RLAD PHV +   ++P+ WP      FDLIVLSELGYY+D AGW  +V R   SL+  G ++AVHW  + A+HV+ G  VH+ L  V G
Sbjct:   11 FDGMYAGAEDPWGFETRWYDQRKHDVTVACLPRRRYRSAFEPGCSTGMLTRRLALRCDRLLAVDIAAAAVASARRRLADQPHVRVERMSVPDEWPAVADDRFDLIVLSELGYYFDDAGWDRLVARTVDSLAPGGTLVAVHWRPAVAEHVRGGDEVHRLLDGVDG 174          
BLAST of mRNA_P-wetherbeei_contig19593.1.1 vs. uniprot
Match: A0A7W1ZAF7_9ACTN (Methyltransferase domain-containing protein n=1 Tax=Acidimicrobiia bacterium TaxID=2080302 RepID=A0A7W1ZAF7_9ACTN)

HSP 1 Score: 151 bits (381), Expect = 2.690e-43
Identity = 74/161 (45.96%), Postives = 98/161 (60.87%), Query Frame = 1
Query:   10 FDAAYAAADDPWSFTSSAYEMDKYALTISSLARERYARCFEPACSIGALTRRLAERADEVVACDGSPIAVDRARARLADAPHVELVAAAIPEWWPTGTFDLIVLSELGYYWDSAGWSDIVGRCAQSLSADGEVIAVHWLGSSADHVQNGRTVHQELLAVFG 492
            F+A Y +  DPW F    YE  +Y +T++++   RY R FEP C+ G LT RLAER D VVA DGSP  V+ AR R A   + EL    +P+ WPTG FDL+VLSE+GYY+D    + +     ++L   G ++ VHWLG SADHV +G  VH  L  + G
Sbjct:    9 FEARYRSDPDPWRFADCEYEQRRYEITMATMPHRRYRRAFEPGCATGELTHRLAERCDSVVAWDGSPTVVEHARRRCAALANAELDVGVVPDDWPTGHFDLVVLSEIGYYFDRCELARLATLAGETLEPGGTLLGVHWLGESADHVLHGDEVHDVLFGLEG 169          
BLAST of mRNA_P-wetherbeei_contig19593.1.1 vs. uniprot
Match: A0A1W5XI38_9ACTN (SAM-dependent methyltransferase n=3 Tax=Streptomyces TaxID=1883 RepID=A0A1W5XI38_9ACTN)

HSP 1 Score: 151 bits (381), Expect = 4.310e-43
Identity = 80/159 (50.31%), Postives = 96/159 (60.38%), Query Frame = 1
Query:   10 FDAAYAAADDPWSFTSSAYEMDKYALTISSLARERYARCFEPACSIGALTRRLAERADEVVACDGSPIAVDRARARLADAPHVELVAAAIPEWWPTGTFDLIVLSELGYYWDSAGWSDIVGRCAQSLSADGEVIAVHWLGSSADHVQNGRTVHQELLAV 486
            FDA YA A DPW      YE  KYALT++SL R RY   FEP CS+G LTR LA R D ++A D  P AV  A AR  D PHVE+   A+P+ WP GTFDL+VLSEL YY+D+A   D +GR   SL   G ++ VHW     +H + G  V   L AV
Sbjct:    8 FDAMYATAADPWDLAGRWYEQRKYALTLASLPRPRYRAAFEPGCSVGVLTRLLAARCDHLLAADRVPAAVTAATARTRDLPHVEVRRLAVPDAWPDGTFDLVVLSELLYYFDAATLRDTLGRTLDSLEPGGTLVTVHWNHPVREHCRTGPEVASALAAV 166          
BLAST of mRNA_P-wetherbeei_contig19593.1.1 vs. uniprot
Match: A0A0B5EPZ0_STRA4 (Methyltransferase n=2 Tax=Streptomyces TaxID=1883 RepID=A0A0B5EPZ0_STRA4)

HSP 1 Score: 150 bits (378), Expect = 1.300e-42
Identity = 77/149 (51.68%), Postives = 92/149 (61.74%), Query Frame = 1
Query:   10 FDAAYAAADDPWSFTSSAYEMDKYALTISSLARERYARCFEPACSIGALTRRLAERADEVVACDGSPIAVDRARARLADAPHVELVAAAIPEWWPTGTFDLIVLSELGYYWDSAGWSDIVGRCAQSLSADGEVIAVHWLGSSADHVQNG 456
            FDA YA A DPW      YE  KYALT+++L R RY R FEP CS+G LTR LA+R D V+ACD  P AV+ A AR  D PHV      +P+ WP GTFDL+VLSEL YY+D  G  DI+ R  Q L   G ++ VHW    A+H   G
Sbjct:   10 FDAMYARAADPWDLAGRWYEQRKYALTLAALPRPRYRRAFEPGCSVGVLTRLLADRCDSVLACDRVPRAVEEAAARNRDLPHVRTEHLVVPKQWPKGTFDLVVLSELLYYFDEDGLRDILDRTVQGLEPGGTLVTVHWDHPVAEHRLTG 158          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19593.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X6NYK0_9ACTN3.900e-5453.01Methyltransferase domain-containing protein n=1 Ta... [more]
A0A317LTP1_9ACTN3.400e-5256.14Nodulation protein S (NodS) n=4 Tax=unclassified N... [more]
UPI001748CCDC2.940e-4853.16methyltransferase domain-containing protein n=1 Ta... [more]
A0A840W2X8_9ACTN4.160e-4853.25SAM-dependent methyltransferase n=2 Tax=Nocardiops... [more]
UPI00034DDECD8.460e-4651.90methyltransferase domain-containing protein n=1 Ta... [more]
A0A7W0QG56_9ACTN1.980e-4449.68Methyltransferase domain-containing protein n=1 Ta... [more]
A0A1C5A460_9ACTN1.170e-4348.78Nodulation protein S (NodS) n=4 Tax=Micromonospora... [more]
A0A7W1ZAF7_9ACTN2.690e-4345.96Methyltransferase domain-containing protein n=1 Ta... [more]
A0A1W5XI38_9ACTN4.310e-4350.31SAM-dependent methyltransferase n=3 Tax=Streptomyc... [more]
A0A0B5EPZ0_STRA41.300e-4251.68Methyltransferase n=2 Tax=Streptomyces TaxID=1883 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19593contigP-wetherbeei_contig19593:29..544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1245475.ANAE01000212_gene1653
PFAMsNodS
Model size516
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.08e-52
EggNOG OGsCOG0500@1|root,COG0500@2|Bacteria,2I2TM@201174|Actinobacteria
DescriptionMethyltransferase type 12
Cds size513
COG categoryQ
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.7972503-UTR-P-wetherbeei_contig19593:28..311683186176.7972503-UTR-P-wetherbeei_contig19593:28..31Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19593 29..31 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.8060055-CDS-P-wetherbeei_contig19593:31..5441683186176.8060055-CDS-P-wetherbeei_contig19593:31..544Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19593 32..544 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19593.1.1prot_P-wetherbeei_contig19593.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19593 32..544 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19593.1.1

>prot_P-wetherbeei_contig19593.1.1 ID=prot_P-wetherbeei_contig19593.1.1|Name=mRNA_P-wetherbeei_contig19593.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=171bp
MSFDAAYAAADDPWSFTSSAYEMDKYALTISSLARERYARCFEPACSIGA
LTRRLAERADEVVACDGSPIAVDRARARLADAPHVELVAAAIPEWWPTGT
FDLIVLSELGYYWDSAGWSDIVGRCAQSLSADGEVIAVHWLGSSADHVQN
GRTVHQELLAVFGPSDLHIER
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mRNA from alignment at P-wetherbeei_contig19593:29..544+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19593.1.1 ID=mRNA_P-wetherbeei_contig19593.1.1|Name=mRNA_P-wetherbeei_contig19593.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=516bp|location=Sequence derived from alignment at P-wetherbeei_contig19593:29..544+ (Phaeothamnion wetherbeei SAG_119_79)
CCGATGAGCTTCGATGCTGCGTACGCGGCAGCGGACGACCCCTGGTCGTT CACGTCGTCGGCGTACGAGATGGACAAGTACGCGCTGACGATCTCGTCGT TGGCCCGCGAGCGGTACGCGCGCTGCTTCGAACCGGCGTGCTCGATCGGC GCCCTGACCCGACGTCTCGCGGAACGCGCTGACGAGGTCGTGGCCTGCGA CGGGTCGCCGATCGCCGTCGACCGCGCCAGGGCGCGGCTGGCCGACGCAC CACACGTGGAGCTCGTCGCCGCCGCGATCCCCGAGTGGTGGCCGACGGGA ACCTTCGATCTCATCGTGCTCTCCGAGCTGGGCTACTACTGGGACAGCGC CGGATGGTCGGACATCGTCGGACGGTGCGCGCAGTCGCTGAGTGCCGACG GCGAGGTCATCGCGGTCCACTGGCTCGGTTCGTCCGCGGACCACGTTCAG AACGGCAGAACGGTCCACCAGGAGCTGCTGGCCGTGTTCGGTCCGTCGGA CCTTCACATCGAGCGT
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19593:29..544+

>mRNA_P-wetherbeei_contig19593.1.1 ID=mRNA_P-wetherbeei_contig19593.1.1|Name=mRNA_P-wetherbeei_contig19593.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=513bp|location=Sequence derived from alignment at P-wetherbeei_contig19593:29..544+ (Phaeothamnion wetherbeei SAG_119_79)
ATGAGCTTCGATGCTGCGTACGCGGCAGCGGACGACCCCTGGTCGTTCAC
GTCGTCGGCGTACGAGATGGACAAGTACGCGCTGACGATCTCGTCGTTGG
CCCGCGAGCGGTACGCGCGCTGCTTCGAACCGGCGTGCTCGATCGGCGCC
CTGACCCGACGTCTCGCGGAACGCGCTGACGAGGTCGTGGCCTGCGACGG
GTCGCCGATCGCCGTCGACCGCGCCAGGGCGCGGCTGGCCGACGCACCAC
ACGTGGAGCTCGTCGCCGCCGCGATCCCCGAGTGGTGGCCGACGGGAACC
TTCGATCTCATCGTGCTCTCCGAGCTGGGCTACTACTGGGACAGCGCCGG
ATGGTCGGACATCGTCGGACGGTGCGCGCAGTCGCTGAGTGCCGACGGCG
AGGTCATCGCGGTCCACTGGCTCGGTTCGTCCGCGGACCACGTTCAGAAC
GGCAGAACGGTCCACCAGGAGCTGCTGGCCGTGTTCGGTCCGTCGGACCT
TCACATCGAGCGT
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