mRNA_P-wetherbeei_contig19591.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19591.1.1
Unique NamemRNA_P-wetherbeei_contig19591.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig19591.1.1 vs. uniprot
Match: UPI001BA63DA8 (16S rRNA (guanine(527)-N(7))-methyltransferase RsmG n=9 Tax=Bradyrhizobium TaxID=374 RepID=UPI001BA63DA8)

HSP 1 Score: 410 bits (1053), Expect = 5.280e-144
Identity = 204/223 (91.48%), Postives = 214/223 (95.96%), Query Frame = 1 
Query:   22 MTPPADKAAALALTPVSRETEARLDRYVDLLREWQAKTNLVAPSTLPNIWTRHISDSLQLLSLAPSARKWVDLGSGGGFPGVVLACALAETPDANIQLVERNAKKAAFLREAIRVTSAPGTVHLADIGDIVDRIAGPVDCVTARALAPLHQLIGFAEPLVGKGAKALFLKGQDVEAELTEATKYWNIRPQLHSSRTGGHGWIVELDRIERRNQSAMGTGYERD 690
            M+  +DK AALALTPVSRETEARLDRYVDLLREWQAKTNLVAPSTLP++WTRHI+DSLQLLSLAP+A +WVDLGSGGGFPGVVLACALAETP ANIQLVERNAKKAAFLREAIRVTSA GTVHLADIGDIVDRIAGPVDCVTARALAPLHQLIGFAEPL+GKGAKALFLKGQDVEAELTEATKYWNI+PQLHSSRTGG GWIVELDRIERR  SAMGTGY+RD
Sbjct:    1 MSSTSDKTAALALTPVSRETEARLDRYVDLLREWQAKTNLVAPSTLPHLWTRHIADSLQLLSLAPTATRWVDLGSGGGFPGVVLACALAETPGANIQLVERNAKKAAFLREAIRVTSAAGTVHLADIGDIVDRIAGPVDCVTARALAPLHQLIGFAEPLIGKGAKALFLKGQDVEAELTEATKYWNIKPQLHSSRTGGQGWIVELDRIERRKISAMGTGYDRD 223
[Close]
BLAST of mRNA_P-wetherbeei_contig19591.1.1 vs. uniprot
Match: A0A525IDH1_BRASZ (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Bradyrhizobium sp. TaxID=376 RepID=A0A525IDH1_BRASZ)

HSP 1 Score: 382 bits (982), Expect = 3.880e-133
Identity = 188/221 (85.07%), Postives = 200/221 (90.50%), Query Frame = 1 
Query:   16 KPMTPPADKAAALALTPVSRETEARLDRYVDLLREWQAKTNLVAPSTLPNIWTRHISDSLQLLSLAPSARKWVDLGSGGGFPGVVLACALAETPDANIQLVERNAKKAAFLREAIRVTSAPGTVHLADIGDIVDRIAGPVDCVTARALAPLHQLIGFAEPLVGKGAKALFLKGQDVEAELTEATKYWNIRPQLHSSRTGGHGWIVELDRIERRNQSAMGTG 678
            K  T P+DKA ALALTPVSRETEARLDRYVDLLREWQAKTNLVAPSTLPN+WTRHISDSLQLL++APSAR W D GSGGGFPGVVLACALAETP A + L+ERNAKKAAFLREA+R+T +PG +HLADIGD VDRI GPVDCVTARA+APLHQLIG AEPLV KGAKALFLKGQDVEAELTEATKYWNI+P LHSSRTGGHGWIVELDRIERRN SA   G
Sbjct:    3 KESTSPSDKAVALALTPVSRETEARLDRYVDLLREWQAKTNLVAPSTLPNLWTRHISDSLQLLTIAPSARIWADFGSGGGFPGVVLACALAETPGAMVHLIERNAKKAAFLREALRITQSPGVIHLADIGDSVDRITGPVDCVTARAVAPLHQLIGLAEPLVKKGAKALFLKGQDVEAELTEATKYWNIKPHLHSSRTGGHGWIVELDRIERRNPSAPDQG 223
[Close]
BLAST of mRNA_P-wetherbeei_contig19591.1.1 vs. uniprot
Match: A0A1M5YQB3_9BRAD (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5YQB3_9BRAD)

HSP 1 Score: 379 bits (973), Expect = 1.090e-131
Identity = 189/215 (87.91%), Postives = 199/215 (92.56%), Query Frame = 1 
Query:   34 ADKAAALALTPVSRETEARLDRYVDLLREWQAKTNLVAPSTLPNIWTRHISDSLQLLSLAPSARKWVDLGSGGGFPGVVLACALAETPDANIQLVERNAKKAAFLREAIRVTSAPGTVHLADIGDIVDRIAGPVDCVTARALAPLHQLIGFAEPLVGKGAKALFLKGQDVEAELTEATKYWNIRPQLHSSRTGGHGWIVELDRIERRNQSAMGTG 678
            ADKAAALALTPVSRE EARLDRYVDLLREWQAKTNLVAPSTLP++WTRHISDSLQLL+LAPSA+ W DLGSGGGFPGVVLACALAE P A I LVERNAKKAAFLREA+RVT+APGTVHLADIGD VDR+ GPVDCVTARA+APLHQLIGFAEPLV +GAKALF KGQDVEAELTEATKYWNIRP LHSSRTGGHGWIVELD+IERRN SA   G
Sbjct:   14 ADKAAALALTPVSREIEARLDRYVDLLREWQAKTNLVAPSTLPSLWTRHISDSLQLLALAPSAKIWADLGSGGGFPGVVLACALAEAPGAMIHLVERNAKKAAFLREALRVTNAPGTVHLADIGDSVDRLRGPVDCVTARAVAPLHQLIGFAEPLVRRGAKALFPKGQDVEAELTEATKYWNIRPNLHSSRTGGHGWIVELDQIERRNSSAAAHG 228
[Close]
BLAST of mRNA_P-wetherbeei_contig19591.1.1 vs. uniprot
Match: A0A1H0HS54_9BRAD (Ribosomal RNA small subunit methyltransferase G n=3 Tax=Bradyrhizobiaceae TaxID=41294 RepID=A0A1H0HS54_9BRAD)

HSP 1 Score: 379 bits (972), Expect = 1.340e-131
Identity = 190/216 (87.96%), Postives = 200/216 (92.59%), Query Frame = 1 
Query:   31 PADKAAALALTPVSRETEARLDRYVDLLREWQAKTNLVAPSTLPNIWTRHISDSLQLLSLAPSARKWVDLGSGGGFPGVVLACALAETPDANIQLVERNAKKAAFLREAIRVTSAPGTVHLADIGDIVDRIAGPVDCVTARALAPLHQLIGFAEPLVGKGAKALFLKGQDVEAELTEATKYWNIRPQLHSSRTGGHGWIVELDRIERRNQSAMGTG 678
            P+DKAAALALTPVSRETEARLDRYVDLL EWQAKTNLVAPSTLPN+WTRHISDSLQLLSLAPSA+ WVDLGSGGGFPGVVLACALAE   ANI L+ERNAKKAAFLREAIRVTSA GTVHLADIGD VDRIAGP+DC+TARALAPLHQLIGFAEP+V KGAKALFLKGQDVEAELTEATKYWNI P+LHSSRT G+GWIVELD+IERR  SA   G
Sbjct:   11 PSDKAAALALTPVSRETEARLDRYVDLLVEWQAKTNLVAPSTLPNLWTRHISDSLQLLSLAPSAKTWVDLGSGGGFPGVVLACALAEVLGANIHLIERNAKKAAFLREAIRVTSAAGTVHLADIGDSVDRIAGPIDCITARALAPLHQLIGFAEPVVRKGAKALFLKGQDVEAELTEATKYWNIEPRLHSSRTSGNGWIVELDQIERRMTSATADG 226
[Close]
BLAST of mRNA_P-wetherbeei_contig19591.1.1 vs. uniprot
Match: UPI001C02606B (16S rRNA (guanine(527)-N(7))-methyltransferase RsmG n=3 Tax=unclassified Bradyrhizobium TaxID=2631580 RepID=UPI001C02606B)

HSP 1 Score: 375 bits (962), Expect = 5.540e-130
Identity = 185/214 (86.45%), Postives = 197/214 (92.06%), Query Frame = 1 
Query:   37 DKAAALALTPVSRETEARLDRYVDLLREWQAKTNLVAPSTLPNIWTRHISDSLQLLSLAPSARKWVDLGSGGGFPGVVLACALAETPDANIQLVERNAKKAAFLREAIRVTSAPGTVHLADIGDIVDRIAGPVDCVTARALAPLHQLIGFAEPLVGKGAKALFLKGQDVEAELTEATKYWNIRPQLHSSRTGGHGWIVELDRIERRNQSAMGTG 678
            DKAAALALTPVSRETEARLDRYVDLL EWQAKTNLVAPSTLP++WTRHI+DSLQLL++APSA+ W DLGSGGGFPGVVLACALA TP A + LVERNAKKAAFLREA+RVT+APG VHL+DIGD VDRI GPVDCVTARA+APLHQLIGFAEPLV KGAKALFLKGQDVEAELTEATKYWNI+PQLHSSRTGGHGWIVELD IERR Q A   G
Sbjct:   17 DKAAALALTPVSRETEARLDRYVDLLLEWQAKTNLVAPSTLPSLWTRHIADSLQLLTIAPSAKTWADLGSGGGFPGVVLACALAGTPGAMVHLVERNAKKAAFLREALRVTNAPGQVHLSDIGDSVDRITGPVDCVTARAVAPLHQLIGFAEPLVKKGAKALFLKGQDVEAELTEATKYWNIKPQLHSSRTGGHGWIVELDNIERRRQPATAHG 230
[Close]
BLAST of mRNA_P-wetherbeei_contig19591.1.1 vs. uniprot
Match: A0A0D7P0Z2_9BRAD (Ribosomal RNA small subunit methyltransferase G n=5 Tax=Bradyrhizobium TaxID=374 RepID=A0A0D7P0Z2_9BRAD)

HSP 1 Score: 374 bits (960), Expect = 7.300e-130
Identity = 188/207 (90.82%), Postives = 195/207 (94.20%), Query Frame = 1 
Query:   34 ADKAAALALTPVSRETEARLDRYVDLLREWQAKTNLVAPSTLPNIWTRHISDSLQLLSLAPSARKWVDLGSGGGFPGVVLACALAETPDANIQLVERNAKKAAFLREAIRVTSAPGTVHLADIGDIVDRIAGPVDCVTARALAPLHQLIGFAEPLVGKGAKALFLKGQDVEAELTEATKYWNIRPQLHSSRTGGHGWIVELDRIERR 654
            ADKAAALALTPVSRETEARLDRYV LL EWQAKTNLVAPSTLPN+WTRHISDSLQLLSLAPSA+ WVDLGSGGGFPGVVLACALAETPDA+I LVER AKKAAFLREAIRVT+APGTVHLADIGD VDRIAG +DCVTARALAPLHQLIGFAEP V KGAKALFLKGQDV+AELTEATKYWNI P+LHSSRTGGHGWIVEL  IERR
Sbjct:   15 ADKAAALALTPVSRETEARLDRYVALLLEWQAKTNLVAPSTLPNLWTRHISDSLQLLSLAPSAKAWVDLGSGGGFPGVVLACALAETPDASIHLVERTAKKAAFLREAIRVTAAPGTVHLADIGDSVDRIAGSIDCVTARALAPLHQLIGFAEPWVRKGAKALFLKGQDVDAELTEATKYWNIEPKLHSSRTGGHGWIVELGSIERR 221
[Close]
BLAST of mRNA_P-wetherbeei_contig19591.1.1 vs. uniprot
Match: UPI001C4A01F7 (16S rRNA (guanine(527)-N(7))-methyltransferase RsmG n=1 Tax=Bradyrhizobium sp. dw_411 TaxID=2720082 RepID=UPI001C4A01F7)

HSP 1 Score: 374 bits (960), Expect = 1.080e-129
Identity = 186/218 (85.32%), Postives = 200/218 (91.74%), Query Frame = 1 
Query:    1 STEQAKPMTPPADKAAALALTPVSRETEARLDRYVDLLREWQAKTNLVAPSTLPNIWTRHISDSLQLLSLAPSARKWVDLGSGGGFPGVVLACALAETPDANIQLVERNAKKAAFLREAIRVTSAPGTVHLADIGDIVDRIAGPVDCVTARALAPLHQLIGFAEPLVGKGAKALFLKGQDVEAELTEATKYWNIRPQLHSSRTGGHGWIVELDRIERR 654
            ++ Q +   P +DKAAALALTPVSRETEARLDRYV+LL EWQAKTNLVAPSTLPN+WTRHISDSLQLL+LAPSA+ W DLGSGGGFPGVVLACALAE PDA I LVERNAKKAAFLREA+RVT++PGT+H ADIGD VDRI G VDCVTARALAPLHQLIGFAEPLV +GAKALFLKGQDVEAELTEATKYWNI+PQLHSSRTGGHGWIVELD IERR
Sbjct:    4 ASSQTRSPIPGSDKAAALALTPVSRETEARLDRYVELLLEWQAKTNLVAPSTLPNLWTRHISDSLQLLTLAPSAKAWADLGSGGGFPGVVLACALAEIPDARIHLVERNAKKAAFLREALRVTNSPGTIHPADIGDSVDRIVGKVDCVTARALAPLHQLIGFAEPLVKQGAKALFLKGQDVEAELTEATKYWNIKPQLHSSRTGGHGWIVELDHIERR 221
[Close]
BLAST of mRNA_P-wetherbeei_contig19591.1.1 vs. uniprot
Match: A0A1M5J591_9BRAD (Ribosomal RNA small subunit methyltransferase G n=1 Tax=Bradyrhizobium erythrophlei TaxID=1437360 RepID=A0A1M5J591_9BRAD)

HSP 1 Score: 372 bits (954), Expect = 8.540e-129
Identity = 182/217 (83.87%), Postives = 197/217 (90.78%), Query Frame = 1 
Query:   28 PPADKAAALALTPVSRETEARLDRYVDLLREWQAKTNLVAPSTLPNIWTRHISDSLQLLSLAPSARKWVDLGSGGGFPGVVLACALAETPDANIQLVERNAKKAAFLREAIRVTSAPGTVHLADIGDIVDRIAGPVDCVTARALAPLHQLIGFAEPLVGKGAKALFLKGQDVEAELTEATKYWNIRPQLHSSRTGGHGWIVELDRIERRNQSAMGTG 678
            P ADKA AL LTPVSRETEARLDRY+DLLREWQAKTNLV+PSTLP +WTRH++DSLQLL++APSA  WVDLGSGGGFPGVVLACALAETP A + LVERNAKKAAFLREA+R+T +PGTVHLADIGD VDRI GPVDC+TARA+APLHQLIGFAEPLV +GAKALFLKGQDVEAELTEATKYW I P LHSSRTGGHGWIVELDRIERR+ SA   G
Sbjct:   12 PTADKAEALKLTPVSRETEARLDRYLDLLREWQAKTNLVSPSTLPKLWTRHVADSLQLLTIAPSAGFWVDLGSGGGFPGVVLACALAETPSAMVHLVERNAKKAAFLREALRITHSPGTVHLADIGDCVDRITGPVDCITARAVAPLHQLIGFAEPLVKRGAKALFLKGQDVEAELTEATKYWKIDPHLHSSRTGGHGWIVELDRIERRSPSAKAYG 228
[Close]
BLAST of mRNA_P-wetherbeei_contig19591.1.1 vs. uniprot
Match: UPI00167D0FCB (16S rRNA (guanine(527)-N(7))-methyltransferase RsmG n=4 Tax=Bradyrhizobium TaxID=374 RepID=UPI00167D0FCB)

HSP 1 Score: 370 bits (951), Expect = 2.530e-128
Identity = 185/216 (85.65%), Postives = 196/216 (90.74%), Query Frame = 1 
Query:   31 PADKAAALALTPVSRETEARLDRYVDLLREWQAKTNLVAPSTLPNIWTRHISDSLQLLSLAPSARKWVDLGSGGGFPGVVLACALAETPDANIQLVERNAKKAAFLREAIRVTSAPGTVHLADIGDIVDRIAGPVDCVTARALAPLHQLIGFAEPLVGKGAKALFLKGQDVEAELTEATKYWNIRPQLHSSRTGGHGWIVELDRIERRNQSAMGTG 678
            P+DK AALALTPVSRETEARLDRYVDLL EWQAKTNLVAPSTLPN+WTRHI+DSLQLLSLAP+A+ WVD GSGGGFPGVVLACALAETP AN+ LVERNAKKAAFLREA+RVTSA  TVHLA IGD VDRI   VDCVTARALAPLHQL+GFAEP V +GAKALFLKGQDVEAELTEATKYW I P+LHSSRTGGHGWIVELDRIERRN SA+  G
Sbjct:   14 PSDKTAALALTPVSRETEARLDRYVDLLVEWQAKTNLVAPSTLPNLWTRHIADSLQLLSLAPTAKAWVDFGSGGGFPGVVLACALAETPGANVHLVERNAKKAAFLREAVRVTSAAATVHLAGIGDSVDRIGSRVDCVTARALAPLHQLVGFAEPFVKEGAKALFLKGQDVEAELTEATKYWIIEPRLHSSRTGGHGWIVELDRIERRNPSAITYG 229
[Close]
BLAST of mRNA_P-wetherbeei_contig19591.1.1 vs. uniprot
Match: A0A0R3MAI8_9BRAD (Ribosomal RNA small subunit methyltransferase G n=4 Tax=Bradyrhizobium TaxID=374 RepID=A0A0R3MAI8_9BRAD)

HSP 1 Score: 368 bits (945), Expect = 2.080e-127
Identity = 183/214 (85.51%), Postives = 192/214 (89.72%), Query Frame = 1 
Query:   37 DKAAALALTPVSRETEARLDRYVDLLREWQAKTNLVAPSTLPNIWTRHISDSLQLLSLAPSARKWVDLGSGGGFPGVVLACALAETPDANIQLVERNAKKAAFLREAIRVTSAPGTVHLADIGDIVDRIAGPVDCVTARALAPLHQLIGFAEPLVGKGAKALFLKGQDVEAELTEATKYWNIRPQLHSSRTGGHGWIVELDRIERRNQSAMGTG 678
            DKA  LALTPVS ETEARLDRYV LL EWQ KTNLVAPSTLPN+WTRH+SDSLQLLSL PSA+ WVDLGSGGGFPGVVLACALAETP AN+ LVERNAKKAAFLREA+RVTSA  TVHLA IGDIVDRI   VDCVTARALAPLHQL+GFAEP V  GAKALFLKGQDVEAELTEATKYWNI+P+LHSSRTGGHGWIVELDRIERRN SA+  G
Sbjct:   16 DKATGLALTPVSSETEARLDRYVALLLEWQIKTNLVAPSTLPNLWTRHVSDSLQLLSLVPSAKTWVDLGSGGGFPGVVLACALAETPGANVHLVERNAKKAAFLREAVRVTSASATVHLAGIGDIVDRIGSRVDCVTARALAPLHQLVGFAEPFVSSGAKALFLKGQDVEAELTEATKYWNIQPRLHSSRTGGHGWIVELDRIERRNPSAITHG 229
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19591.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001BA63DA85.280e-14491.4816S rRNA (guanine(527)-N(7))-methyltransferase Rsm... [more]
A0A525IDH1_BRASZ3.880e-13385.07Ribosomal RNA small subunit methyltransferase G n=... [more]
A0A1M5YQB3_9BRAD1.090e-13187.91Ribosomal RNA small subunit methyltransferase G n=... [more]
A0A1H0HS54_9BRAD1.340e-13187.96Ribosomal RNA small subunit methyltransferase G n=... [more]
UPI001C02606B5.540e-13086.4516S rRNA (guanine(527)-N(7))-methyltransferase Rsm... [more]
A0A0D7P0Z2_9BRAD7.300e-13090.82Ribosomal RNA small subunit methyltransferase G n=... [more]
UPI001C4A01F71.080e-12985.3216S rRNA (guanine(527)-N(7))-methyltransferase Rsm... [more]
A0A1M5J591_9BRAD8.540e-12983.87Ribosomal RNA small subunit methyltransferase G n=... [more]
UPI00167D0FCB2.530e-12885.6516S rRNA (guanine(527)-N(7))-methyltransferase Rsm... [more]
A0A0R3MAI8_9BRAD2.080e-12785.51Ribosomal RNA small subunit methyltransferase G n=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19591contigP-wetherbeei_contig19591:99..791 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog1038859.AXAU01000008_gene1961
Preferred namersmG
PFAMsGidB
Model size693
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K03501
Hectar predicted targeting categoryother localisation
GOsGO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016435,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0036265,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0070043,GO:0070475,GO:0070476,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
Exons1
Evalue3.14e-129
EggNOG OGsCOG0357@1|root,COG0357@2|Bacteria,1MY0K@1224|Proteobacteria,2U9T9@28211|Alphaproteobacteria,3JQQP@41294|Bradyrhizobiaceae
EC2.1.1.170
DescriptionSpecifically methylates the N7 position of guanine in position 527 of 16S rRNA
Cds size672
COG categoryJ
BRITEko00000,ko01000,ko03009,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.732859-CDS-P-wetherbeei_contig19591:98..7701683186176.732859-CDS-P-wetherbeei_contig19591:98..770Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19591 99..770 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.742237-UTR-P-wetherbeei_contig19591:770..7911683186176.742237-UTR-P-wetherbeei_contig19591:770..791Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19591 771..791 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19591.1.1prot_P-wetherbeei_contig19591.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19591 99..770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19591.1.1

>prot_P-wetherbeei_contig19591.1.1 ID=prot_P-wetherbeei_contig19591.1.1|Name=mRNA_P-wetherbeei_contig19591.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=224bp
MTPPADKAAALALTPVSRETEARLDRYVDLLREWQAKTNLVAPSTLPNIW
TRHISDSLQLLSLAPSARKWVDLGSGGGFPGVVLACALAETPDANIQLVE
RNAKKAAFLREAIRVTSAPGTVHLADIGDIVDRIAGPVDCVTARALAPLH
QLIGFAEPLVGKGAKALFLKGQDVEAELTEATKYWNIRPQLHSSRTGGHG
WIVELDRIERRNQSAMGTGYERD*
back to top

mRNA from alignment at P-wetherbeei_contig19591:99..791-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19591.1.1 ID=mRNA_P-wetherbeei_contig19591.1.1|Name=mRNA_P-wetherbeei_contig19591.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=693bp|location=Sequence derived from alignment at P-wetherbeei_contig19591:99..791- (Phaeothamnion wetherbeei SAG_119_79)
TCGACCGAGCAAGCAAAGCCCATGACCCCTCCCGCCGACAAAGCCGCAGC
CCTCGCCCTCACCCCCGTTTCACGTGAAACGGAGGCGCGGCTGGATCGCT
ATGTCGATCTGCTCCGCGAATGGCAGGCGAAAACCAACCTTGTGGCGCCA
TCGACGCTTCCAAATATCTGGACCCGCCATATCTCGGATTCGCTACAGCT
TCTCAGCCTGGCCCCGTCTGCCAGGAAGTGGGTCGACCTCGGCAGTGGCG
GTGGCTTTCCGGGTGTGGTGCTGGCCTGCGCTTTGGCGGAAACGCCGGAC
GCCAATATTCAGCTCGTGGAACGCAACGCCAAGAAGGCCGCGTTCCTGCG
CGAGGCGATCCGCGTGACATCAGCACCGGGTACCGTACACCTCGCTGACA
TCGGGGATATCGTGGATAGAATCGCTGGCCCCGTCGATTGCGTCACTGCA
CGGGCACTGGCTCCGCTACATCAGCTAATCGGTTTTGCGGAACCGCTGGT
AGGAAAGGGCGCCAAGGCGCTGTTTCTCAAGGGCCAAGATGTAGAGGCTG
AATTGACCGAAGCCACTAAATATTGGAATATTAGACCGCAACTTCATTCC
AGCCGCACCGGCGGACACGGCTGGATCGTCGAACTCGACCGTATCGAGCG
ACGCAATCAATCCGCGATGGGCACCGGGTATGAACGTGATTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig19591:99..791-

>mRNA_P-wetherbeei_contig19591.1.1 ID=mRNA_P-wetherbeei_contig19591.1.1|Name=mRNA_P-wetherbeei_contig19591.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=672bp|location=Sequence derived from alignment at P-wetherbeei_contig19591:99..791- (Phaeothamnion wetherbeei SAG_119_79)
ATGACCCCTCCCGCCGACAAAGCCGCAGCCCTCGCCCTCACCCCCGTTTC
ACGTGAAACGGAGGCGCGGCTGGATCGCTATGTCGATCTGCTCCGCGAAT
GGCAGGCGAAAACCAACCTTGTGGCGCCATCGACGCTTCCAAATATCTGG
ACCCGCCATATCTCGGATTCGCTACAGCTTCTCAGCCTGGCCCCGTCTGC
CAGGAAGTGGGTCGACCTCGGCAGTGGCGGTGGCTTTCCGGGTGTGGTGC
TGGCCTGCGCTTTGGCGGAAACGCCGGACGCCAATATTCAGCTCGTGGAA
CGCAACGCCAAGAAGGCCGCGTTCCTGCGCGAGGCGATCCGCGTGACATC
AGCACCGGGTACCGTACACCTCGCTGACATCGGGGATATCGTGGATAGAA
TCGCTGGCCCCGTCGATTGCGTCACTGCACGGGCACTGGCTCCGCTACAT
CAGCTAATCGGTTTTGCGGAACCGCTGGTAGGAAAGGGCGCCAAGGCGCT
GTTTCTCAAGGGCCAAGATGTAGAGGCTGAATTGACCGAAGCCACTAAAT
ATTGGAATATTAGACCGCAACTTCATTCCAGCCGCACCGGCGGACACGGC
TGGATCGTCGAACTCGACCGTATCGAGCGACGCAATCAATCCGCGATGGG
CACCGGGTATGAACGTGATTGA
back to top