mRNA_P-wetherbeei_contig1958.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1958.2.1
Unique NamemRNA_P-wetherbeei_contig1958.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1958.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1958contigP-wetherbeei_contig1958:3608..4345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size739
Hectar predicted targeting categoryother localisation
Exons1
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.4966674-CDS-P-wetherbeei_contig1958:3607..40121683186176.4966674-CDS-P-wetherbeei_contig1958:3607..4012Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1958 3608..4012 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.5051746-UTR-P-wetherbeei_contig1958:4012..43451683186176.5051746-UTR-P-wetherbeei_contig1958:4012..4345Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1958 4013..4345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1958.2.1prot_P-wetherbeei_contig1958.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1958 3608..4012 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1958.2.1

>prot_P-wetherbeei_contig1958.2.1 ID=prot_P-wetherbeei_contig1958.2.1|Name=mRNA_P-wetherbeei_contig1958.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=135bp
SCKGAFRARLQCAGASFRVPPCTSLGPFFRPSANHGQGGGINRSKSTCVE
ASRRKGGTARPSARPATSFEDPHPGAPRRKEKVEQVNPKLKERDFGPVQV
GGEETAVLATATATTATTRWCTGETVEGFLPRPS*
back to top

mRNA from alignment at P-wetherbeei_contig1958:3608..4345+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1958.2.1 ID=mRNA_P-wetherbeei_contig1958.2.1|Name=mRNA_P-wetherbeei_contig1958.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=738bp|location=Sequence derived from alignment at P-wetherbeei_contig1958:3608..4345+ (Phaeothamnion wetherbeei SAG_119_79)
TCATGCAAAGGAGCTTTCAGGGCCCGCTTGCAGTGCGCTGGTGCCTCTTT
TCGAGTTCCTCCTTGCACTTCCCTTGGCCCTTTTTTTCGTCCCTCAGCTA
ATCATGGGCAAGGCGGAGGCATCAATCGCTCAAAATCAACATGCGTCGAG
GCGTCTCGTCGCAAAGGCGGTACCGCGCGACCCTCAGCGCGGCCGGCCAC
CTCCTTTGAAGATCCGCATCCAGGAGCCCCGCGGCGAAAGGAGAAGGTGG
AGCAGGTGAACCCAAAATTGAAAGAGAGAGATTTTGGTCCAGTACAAGTG
GGTGGAGAGGAAACAGCTGTTCTTGCAACTGCAACTGCGACAACAGCAAC
GACGCGTTGGTGCACTGGGGAAACAGTTGAGGGATTCCTACCACGTCCAT
CATGACTTTCAAGGATGCACGGTCGGCGTCTCCGCAAAAGGCGACGCCGC
TGCTCGAGTTTTATGAGCCCTCTGTCGAGGGCGTCGACGAAACGAAGCGG
GAGCGCCTCGTCTTTTATGTGGGAATCAATCCTCTGGTAATGAGAGAAGG
GCAGGAAGGAAGGAAGAGAATAAAGATGCCTACTTTCTGCTAGCGAATGT
GGGTTTGCTCCAGTTTTTGCCACGTGATGTTCCCAGAATCACGCGATAGG
ATGCGCATTGGACTAGCTTCGAAAGCAACATGTTGTTTTCGCTGAGATTA
GGGAAGAGCTGAATTGGAACGGCGGATCGCAGCGATAA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1958:3608..4345+

>mRNA_P-wetherbeei_contig1958.2.1 ID=mRNA_P-wetherbeei_contig1958.2.1|Name=mRNA_P-wetherbeei_contig1958.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=405bp|location=Sequence derived from alignment at P-wetherbeei_contig1958:3608..4345+ (Phaeothamnion wetherbeei SAG_119_79)
TCATGCAAAGGAGCTTTCAGGGCCCGCTTGCAGTGCGCTGGTGCCTCTTT
TCGAGTTCCTCCTTGCACTTCCCTTGGCCCTTTTTTTCGTCCCTCAGCTA
ATCATGGGCAAGGCGGAGGCATCAATCGCTCAAAATCAACATGCGTCGAG
GCGTCTCGTCGCAAAGGCGGTACCGCGCGACCCTCAGCGCGGCCGGCCAC
CTCCTTTGAAGATCCGCATCCAGGAGCCCCGCGGCGAAAGGAGAAGGTGG
AGCAGGTGAACCCAAAATTGAAAGAGAGAGATTTTGGTCCAGTACAAGTG
GGTGGAGAGGAAACAGCTGTTCTTGCAACTGCAACTGCGACAACAGCAAC
GACGCGTTGGTGCACTGGGGAAACAGTTGAGGGATTCCTACCACGTCCAT
CATGA
back to top