mRNA_P-wetherbeei_contig1957.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1957.2.1
Unique NamemRNA_P-wetherbeei_contig1957.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1957.2.1 vs. uniprot
Match: D7FNE2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNE2_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 9.940e-16
Identity = 51/119 (42.86%), Postives = 66/119 (55.46%), Query Frame = 1
Query:    7 EEWERDMLTSVTDGIGWLIKSRGVAILPLCQSELLPWVWPLL---AGSGGSEAERSLAMCVCIDILEHCGEGA--TPLAAELTPVLLQAVSEESSAI---QQAAVYGLGVAAEKGGIHF 339
            E+ E ++L SV D  GW+IK R  A LP  ++ + P V  LL   A +    + RS  +C+ ID+LEHCGEG   +   A L P LLQ    +  A    +QA  YGLGVAAE GG  F
Sbjct:  806 EDGEEELLVSVVDATGWMIKGRKEAFLPAFEAVMRPLVLQLLDPAAPAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDF 924          
BLAST of mRNA_P-wetherbeei_contig1957.2.1 vs. uniprot
Match: A0A835ZDS9_9STRA (Armadillo-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDS9_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 1.870e-15
Identity = 50/121 (41.32%), Postives = 69/121 (57.02%), Query Frame = 1
Query:    7 EEWERDMLTSVTDGIGWLIKSRGVAILPLCQSELLPWVWPLL-----AGSGGSE-------AERSLAMCVCIDILEHCGEGATPLAAELTPVLLQAVSEESSA-IQQAAVYGLGVAAEKGG 330
            +EWE DMLTS TDG+GW++K+R  A L L ++  LP +  L      AG            + R+LA+C CID+ EHCG  A   A  L      A+++ ++A ++QAA YGLGV A  GG
Sbjct: 1097 DEWEYDMLTSCTDGLGWIVKARRGAALALYEAHALPTMGALASPPPQAGXXXXXXXXXTPASHRALALCSCIDVAEHCGGAAQRHAPALLAAARAALADGAAADLRQAAAYGLGVLAAHGG 1217          
BLAST of mRNA_P-wetherbeei_contig1957.2.1 vs. uniprot
Match: A0A6H5JBE6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE6_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 6.120e-15
Identity = 50/119 (42.02%), Postives = 65/119 (54.62%), Query Frame = 1
Query:    7 EEWERDMLTSVTDGIGWLIKSRGVAILPLCQSELLPWVWPLL---AGSGGSEAERSLAMCVCIDILEHCGEGA--TPLAAELTPVLLQAVSEESSAI---QQAAVYGLGVAAEKGGIHF 339
            E+ E ++L SV D  GW+IK R    LP  ++ + P V  LL   A +    + RS  +C+ ID+LEHCGEG   +   A L P LLQ    +  A    +QA  YGLGVAAE GG  F
Sbjct:  284 EDGEEELLVSVVDATGWMIKGRKETFLPAFEAVMRPLVVQLLDPAAVAAVPPSHRSFGLCMAIDVLEHCGEGGRNSVFQAPLLPALLQGARGDDPAAASTRQACAYGLGVAAELGGQDF 402          
BLAST of mRNA_P-wetherbeei_contig1957.2.1 vs. uniprot
Match: A0A8J5XMA5_DIALT (TOG domain-containing protein n=4 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XMA5_DIALT)

HSP 1 Score: 75.1 bits (183), Expect = 1.960e-13
Identity = 46/110 (41.82%), Postives = 66/110 (60.00%), Query Frame = 1
Query:   16 ERDMLTSVTDGIGWLIKSRGVAILPLCQSELLPWVWPLLAGSGGSEAERSLAMCVCIDILEHCGE--GATPLAAELTPVLLQAVSEESSAIQQAAVYGLGVAAEKGGIHF 339
            E  +L+ + + IG  +K+     L L  S +LP V  LLA    S ++R+ AMCV  DI+EHC    G+ P     TPVL+Q  ++ES++++QAAVYGLGV A+  G  F
Sbjct:  853 EETLLSQIVECIGQGLKAYHSPFLALLSSSILPRVQALLAPER-SASDRTAAMCVFDDIIEHCSADGGSAPFVTLGTPVLIQYATDESASVRQAAVYGLGVLAQHAGAAF 961          
BLAST of mRNA_P-wetherbeei_contig1957.2.1 vs. uniprot
Match: D8LD05_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD05_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 3.620e-13
Identity = 47/117 (40.17%), Postives = 63/117 (53.85%), Query Frame = 1
Query:   16 ERDMLTSVTDGIGWLIKSRGVAILPLCQSELLPWVWPLLAGSGGSEA-----ERSLAMCVCIDILEHCGEGA--TPLAAELTPVLLQAVSEE--SSAIQQAAVYGLGVAAEKGGIHF 339
            E +ML SV D  GW+I+ R  A LP  ++ L P V PLL  +  + A      RS A+ + ID+LE  GEG         L P LLQ   E+  +++ +Q   YGLGVAA+ GG  F
Sbjct:  582 EEEMLVSVADATGWMIRGRKAAFLPTFEAVLRPLVLPLLDSTAAAAAALPSSHRSFALSIAIDVLELAGEGGRRAVFPEPLLPALLQGCREDELAASARQVCAYGLGVAADFGGPEF 698          
BLAST of mRNA_P-wetherbeei_contig1957.2.1 vs. uniprot
Match: A0A453B8A5_AEGTS (Uncharacterized protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453B8A5_AEGTS)

HSP 1 Score: 72.0 bits (175), Expect = 1.590e-12
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    1 EDEEWERDMLTSVTDGIGWLIKSRGVAILPLCQSELLPWVWPLLAGSGGSEAERSLAMCVCIDILEHCGEGATPLAAELTPVLLQAVSEESSAIQQAAVYGLGVAAEKGGIHF 339
            E+ E E ++   V + +G LIK+   + LP    EL  +V P+L G   +  ER +A+C+  DI E C E A        P LL+A ++++S ++QAAVYGLGV AE GG+ F
Sbjct:   72 EENEQEEEVFDQVGECLGTLIKTFKASFLPFFD-ELSVYVTPML-GKDKTAEERRIAICIFDDIAEQCRESALKYYDTYVPFLLEASNDDNSDVRQAAVYGLGVCAEFGGLTF 182          
BLAST of mRNA_P-wetherbeei_contig1957.2.1 vs. uniprot
Match: A0A453B898_AEGTS (Uncharacterized protein n=4 Tax=Triticinae TaxID=1648030 RepID=A0A453B898_AEGTS)

HSP 1 Score: 72.0 bits (175), Expect = 2.270e-12
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    1 EDEEWERDMLTSVTDGIGWLIKSRGVAILPLCQSELLPWVWPLLAGSGGSEAERSLAMCVCIDILEHCGEGATPLAAELTPVLLQAVSEESSAIQQAAVYGLGVAAEKGGIHF 339
            E+ E E ++   V + +G LIK+   + LP    EL  +V P+L G   +  ER +A+C+  DI E C E A        P LL+A ++++S ++QAAVYGLGV AE GG+ F
Sbjct:  429 EENEQEEEVFDQVGECLGTLIKTFKASFLPFFD-ELSVYVTPML-GKDKTAEERRIAICIFDDIAEQCRESALKYYDTYVPFLLEASNDDNSDVRQAAVYGLGVCAEFGGLTF 539          
BLAST of mRNA_P-wetherbeei_contig1957.2.1 vs. uniprot
Match: A0A446KT14_TRITD (TOG domain-containing protein n=4 Tax=Poaceae TaxID=4479 RepID=A0A446KT14_TRITD)

HSP 1 Score: 72.0 bits (175), Expect = 2.310e-12
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    1 EDEEWERDMLTSVTDGIGWLIKSRGVAILPLCQSELLPWVWPLLAGSGGSEAERSLAMCVCIDILEHCGEGATPLAAELTPVLLQAVSEESSAIQQAAVYGLGVAAEKGGIHF 339
            E+ E E ++   V + +G LIK+   + LP    EL  +V P+L G   +  ER +A+C+  DI E C E A        P LL+A ++++S ++QAAVYGLGV AE GG+ F
Sbjct:  571 EENEQEEEVFDQVGECLGTLIKTFKASFLPFFD-ELSVYVTPML-GKDKTAEERRIAICIFDDIAEQCRESALKYYDTYVPFLLEASNDDNSDVRQAAVYGLGVCAEFGGLTF 681          
BLAST of mRNA_P-wetherbeei_contig1957.2.1 vs. uniprot
Match: M8A4Y3_TRIUA (Importin-5 n=1 Tax=Triticum urartu TaxID=4572 RepID=M8A4Y3_TRIUA)

HSP 1 Score: 72.0 bits (175), Expect = 2.360e-12
Identity = 45/113 (39.82%), Postives = 66/113 (58.41%), Query Frame = 1
Query:    1 EDEEWERDMLTSVTDGIGWLIKSRGVAILPLCQSELLPWVWPLLAGSGGSEAERSLAMCVCIDILEHCGEGATPLAAELTPVLLQAVSEESSAIQQAAVYGLGVAAEKGGIHF 339
            E+ E E ++   V + +G LIK+   + LP    EL  +V P+L G   +  ER +A+C+  DI E C E A        P LL+A ++++S ++QAAVYGLGV AE GG+ F
Sbjct:  849 EENEQEEEVFDQVGECLGTLIKTFKASFLPFFD-ELSVYVTPML-GKDKTAEERRIAICIFDDIAEQCRESALKYYDTYVPFLLEASNDDNSDVRQAAVYGLGVCAEFGGLTF 959          
BLAST of mRNA_P-wetherbeei_contig1957.2.1 vs. uniprot
Match: A0A5B7BA72_DAVIN (Putative importin-5-like (Fragment) n=2 Tax=asterids TaxID=71274 RepID=A0A5B7BA72_DAVIN)

HSP 1 Score: 72.0 bits (175), Expect = 2.360e-12
Identity = 43/113 (38.05%), Postives = 65/113 (57.52%), Query Frame = 1
Query:    1 EDEEWERDMLTSVTDGIGWLIKSRGVAILPLCQSELLPWVWPLLAGSGGSEAERSLAMCVCIDILEHCGEGATPLAAELTPVLLQAVSEESSAIQQAAVYGLGVAAEKGGIHF 339
            E+ E E ++   V D +G LIK+   + LP    EL  ++ P+  G   +  ER +A+C+  D+ EHC E A        P LL+A ++E+  ++QAAVYG+GV AE GG+ F
Sbjct:  883 EENEQEEELFDQVGDCLGTLIKTFKASFLPFFD-ELSSYLTPMW-GKDKTAEERRIAICIFDDVAEHCREAALKYYDTYLPFLLEACNDETPDVRQAAVYGIGVCAEFGGVVF 993          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1957.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNE2_ECTSI9.940e-1642.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZDS9_9STRA1.870e-1541.32Armadillo-type protein n=1 Tax=Tribonema minus Tax... [more]
A0A6H5JBE6_9PHAE6.120e-1542.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J5XMA5_DIALT1.960e-1341.82TOG domain-containing protein n=4 Tax=Diacronema l... [more]
D8LD05_ECTSI3.620e-1340.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A453B8A5_AEGTS1.590e-1239.82Uncharacterized protein n=2 Tax=Aegilops tauschii ... [more]
A0A453B898_AEGTS2.270e-1239.82Uncharacterized protein n=4 Tax=Triticinae TaxID=1... [more]
A0A446KT14_TRITD2.310e-1239.82TOG domain-containing protein n=4 Tax=Poaceae TaxI... [more]
M8A4Y3_TRIUA2.360e-1239.82Importin-5 n=1 Tax=Triticum urartu TaxID=4572 RepI... [more]
A0A5B7BA72_DAVIN2.360e-1238.05Putative importin-5-like (Fragment) n=2 Tax=asteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1957contigP-wetherbeei_contig1957:4790..5369 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FNE2
Model size339
Max annot lvl2759|Eukaryota
KEGG koko:K20195,ko:K20221,ko:K20222
KEGG TC1.I.1
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.98e-15
EggNOG OGsKOG2171@1|root,KOG2171@2759|Eukaryota
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-01_001780.1
Descriptionribosomal protein import into nucleus
Cds size315
COG categoryS
BRITEko00000,ko00001,ko03009,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.3693156-UTR-P-wetherbeei_contig1957:4789..48131683186176.3693156-UTR-P-wetherbeei_contig1957:4789..4813Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1957 4790..4813 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.3788586-CDS-P-wetherbeei_contig1957:4813..49341683186176.3788586-CDS-P-wetherbeei_contig1957:4813..4934Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1957 4814..4934 +
1683186176.3890789-CDS-P-wetherbeei_contig1957:4988..50981683186176.3890789-CDS-P-wetherbeei_contig1957:4988..5098Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1957 4989..5098 +
1683186176.397122-CDS-P-wetherbeei_contig1957:5285..53691683186176.397122-CDS-P-wetherbeei_contig1957:5285..5369Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1957 5286..5369 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1957.2.1prot_P-wetherbeei_contig1957.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1957 4814..5369 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1957.2.1

>prot_P-wetherbeei_contig1957.2.1 ID=prot_P-wetherbeei_contig1957.2.1|Name=mRNA_P-wetherbeei_contig1957.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=105bp
MLTSVTDGIGWLIKSRGVAILPLCQSELLPWVWPLLAGSGGSEAERSLAM
CVCIDILEHCGEGATPLAAELTPVLLQAVSEESSAIQQAAVYGLGVAAEK
GGIHF
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mRNA from alignment at P-wetherbeei_contig1957:4790..5369+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1957.2.1 ID=mRNA_P-wetherbeei_contig1957.2.1|Name=mRNA_P-wetherbeei_contig1957.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=580bp|location=Sequence derived from alignment at P-wetherbeei_contig1957:4790..5369+ (Phaeothamnion wetherbeei SAG_119_79)
GAGGACGAGGAGTGGGAACGCGACATGCTGACGTCGGTCACGGACGGCAT CGGGTGGCTCATCAAGTCACGCGGCGTCGCCATTCTGCCGCTCTGCCAGA GCGAGCTGCTGCCGTGGGTCTGGCCGCTCCTGGCGGGCAGCGGCGGTGGC GACGGCGGCGGCGGCACCGGGGGCGGCGGCGGCGAGGCGGCTGGCTCAGG CAGCGAGGCGGAGCGGTCGTTGGCCATGTGCGTGTGCATCGACATCCTGG AGCACTGCGGGGAGGGTGCCACGCCGCTGGCCGCTGAGCTGACTCCAGTG CTGCTTCAGGTGTGGAGGAATGCTCTGCTTCGGTCGGGCGCTGCTTAGCG GGCTTTCAAACTGTACAGATTTAGCGACAAATATTGGCGCTTCACCTCGT TTGCGTCCTCCAGTGCGCGCAATGATTACGACGCAATGCATCCGTCATTG TGCTGCCGCCGTTTGTCGCCGCCCCCGTGGCTTTCAACCTCCGCAGGCAG TGTCAGAAGAAAGCTCCGCCATCCAGCAGGCCGCTGTGTACGGACTCGGC GTGGCGGCGGAGAAGGGAGGCATCCATTTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1957:4790..5369+

>mRNA_P-wetherbeei_contig1957.2.1 ID=mRNA_P-wetherbeei_contig1957.2.1|Name=mRNA_P-wetherbeei_contig1957.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=315bp|location=Sequence derived from alignment at P-wetherbeei_contig1957:4790..5369+ (Phaeothamnion wetherbeei SAG_119_79)
ATGCTGACGTCGGTCACGGACGGCATCGGGTGGCTCATCAAGTCACGCGG
CGTCGCCATTCTGCCGCTCTGCCAGAGCGAGCTGCTGCCGTGGGTCTGGC
CGCTCCTGGCGGGCAGCGGCGGCAGCGAGGCGGAGCGGTCGTTGGCCATG
TGCGTGTGCATCGACATCCTGGAGCACTGCGGGGAGGGTGCCACGCCGCT
GGCCGCTGAGCTGACTCCAGTGCTGCTTCAGGCAGTGTCAGAAGAAAGCT
CCGCCATCCAGCAGGCCGCTGTGTACGGACTCGGCGTGGCGGCGGAGAAG
GGAGGCATCCATTTC
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