mRNA_P-wetherbeei_contig1956.3.3 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1956.3.3
Unique NamemRNA_P-wetherbeei_contig1956.3.3
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig1956.3.3 vs. uniprot
Match: D7FQA3_ECTSI (Cysteine proteinase Cathepsin F (ISS) n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQA3_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 3.660e-75
Identity = 145/267 (54.31%), Postives = 184/267 (68.91%), Query Frame = 1
Query:    1 IFVISGLKLKTSDAQAATSGPGRAGFLFGVVTILFLTSLTGFVAVRIPFGVPEFSYGLAVFRTVPTTLSSGVTLVALAGGNDALALLLTVATNVLGVATVPFLLRAVLSGGVADVHIDAVVLLGKLIVTVLVPILLGKAARERLPGAAGWARRRKVPLSLTSSAMLIMVFWLSLSESSEDVKRVAPADLLAVRQRAAIASAISLSGGLAGL----CCYGLKLPPREMKAVVIMGSEKAPPIALTILSYLAALGNAGLMAVPCIIGQV 789
            IF+ISGL LKT D + A S  GR G+++GVV IL +T   GFVA  IPF V EFSYGL+VF  VPTTLSSGVTLV  AGGNDALALLLTV TN+LGV TVPF ++ V++ G  D  ID V LL KLI++VLVP+++GK  RE +PGA    +R KV LSLTSSAMLIMV W +LS + +++  VA   +L+V     IAS I L      +    C Y LKL  RE KAVV+M S+K  P+++T++ +L  +G  GLM +PCI+G +
Sbjct:   61 IFIISGLTLKTDDIKEALSKEGRWGYIYGVVAILGITGAVGFVAAEIPFDVDEFSYGLSVFCVVPTTLSSGVTLVMNAGGNDALALLLTVTTNLLGVVTVPFYVKGVVNAG-EDASIDPVGLLVKLIISVLVPLVVGKVIREAVPGAKARVKRFKVRLSLTSSAMLIMVVWQTLSRAQDNLTSVAFTQILSV-----IASGIGLHLVYLSINYPICKYILKLKRREFKAVVLMSSQKTLPVSVTVIGFLGNVGQEGLMTIPCIVGHM 321          
BLAST of mRNA_P-wetherbeei_contig1956.3.3 vs. uniprot
Match: A0A836CLX8_9STRA (Cysteine proteinase cathepsin F n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX8_9STRA)

HSP 1 Score: 217 bits (552), Expect = 3.080e-65
Identity = 127/266 (47.74%), Postives = 173/266 (65.04%), Query Frame = 1
Query:    1 IFVISGLKLKTSDAQAATSGPGRAGFLFGVVTILFLTSLTGFVAVRIPFGVPEFSYGLAVFRTVPTTLSSGVTLVALAGGNDALALLLTVATNVLGVATVPFLLRAVL---SGGVADVHIDAVVLLGKLIVTVLVPILLGKAARERLPGAAGWARRRKVPLSLTSSAMLIMVFWLSLSESSEDVKRVAPADLLAVRQRAAIASAISLSGGLAGLCCYGLKLPPREMKAVVIMGSEKAPPIALTILSYLAALGNAGLMAVPCIIGQV 789
            IF+ISGL LKT D + A S  GRAG ++G++ IL +T + GF+ +R+P   PEF+YGL VF  VPTTL+SGV++V  AGGN ALALLLTV TN+  V T PF L A+    S G     ID V LL KLIVTVLVP++ GK  R+ +PG  G+  R+KV L + ++ ML ++ WL++S+++ED+     AD+  V         I LS     +  + LKLP  E KAV IM S+K  P+++TI+SYL ALG+ G M +PCI+G +
Sbjct:   40 IFIISGLTLKTDDIRMAISKQGRAGTIYGIIAILGITPILGFLTIRLPLAQPEFAYGLTVFCAVPTTLASGVSMVTQAGGNGALALLLTVVTNLTAVVTTPFWLSAMFKSKSQGTNGATIDPVSLLQKLIVTVLVPLVFGKLLRDLVPGCKGFVTRQKVKLGVCNNIMLTLIVWLTISDAAEDLLSTPFADIAVVIACGIAVHVIYLSLNWP-MGKFALKLPLPEFKAVTIMASQKTLPLSVTIISYLTALGSTGFMTLPCIVGHM 304          
BLAST of mRNA_P-wetherbeei_contig1956.3.3 vs. uniprot
Match: A0A836CJ89_9STRA (Cysteine proteinase cathepsin F n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ89_9STRA)

HSP 1 Score: 194 bits (492), Expect = 1.540e-56
Identity = 117/262 (44.66%), Postives = 168/262 (64.12%), Query Frame = 1
Query:    1 IFVISGLKLKTSDAQAATSGPGRAGFLFGVVTILFLTSLTGFVAVRIPFGVPEFSYGLAVFRTVPTTLSSGVTLVALAGGNDALALLLTVATNVLGVATVPFLLRAVLSGGVADVHIDAVVLLGKLIVTVLVPILLGKAARERLPGAAGWARRRKVPLSLTSSAMLIMVFWLSLSESSEDVKRVAPADLLAVRQRAAIASAISLSGGLAGLCCYGLKLPPREMKAVVIMGSEKAPPIALTILSYLAALGNAGLMAVPCIIGQ 786
            +F+ISGL LK++D +AA S  G  GF+ G+V IL +T L+GFVAVR+PF   EF+YGLA+F  VPTT++ GV +   AGGN ALAL+LTV +N+LGV   PF L+A  SG   DV IDA+ LL  L++TVL P+L+G+A R  +P       R K  L L SS  L ++ W ++S S+ED+  V+   ++A+   + I     L         Y L+L   E+KAVVIM SEK  P+A+ ++++L  +G+ GL+++P I+ Q
Sbjct:   35 VFLISGLNLKSADIRAAVSREGSLGFIVGMVLILGVTPLSGFVAVRLPFAEKEFAYGLAIFCGVPTTIAVGVAMTTAAGGNAALALMLTVFSNLLGVLITPFWLQAFFSG--QDVAIDALDLLVNLLITVLAPLLVGQAIRFLVPPVRTLVTRHKTALKLISSTSLALIVWQTVSRSAEDILAVSGGSIVAIIAASLIMHVAYLVVSFV-TARYLLRLGDAELKAVVIMSSEKTLPVAIAVIAFLTNVGSEGLLSIPPIVSQ 293          
BLAST of mRNA_P-wetherbeei_contig1956.3.3 vs. uniprot
Match: A4RT86_OSTLU (BASS family transporter: sodium ion/bile acid (Fragment) n=1 Tax=Ostreococcus lucimarinus (strain CCE9901) TaxID=436017 RepID=A4RT86_OSTLU)

HSP 1 Score: 188 bits (478), Expect = 7.910e-55
Identity = 125/277 (45.13%), Postives = 172/277 (62.09%), Query Frame = 1
Query:    1 IFVISGLKLKTSD-AQAATSGPGRAGFLFGVVTILFLTSLTGFVAVRIPFGVPEFSYGLAVFRTVPTTLSSGVTLVALAGGNDALALLLTVATNVLGVATVPFLLRAVLSGG-----------VADVHIDAVVLLGKLIVTVLVPILLGKAARERLPGAAGWARRRKVPLSLTSSAMLIMVFWLSLSESSEDVKRVAPADLLAVRQRAAIASAISLSGGLAGLCCYGLKLPPREMKAVVIMGSEKAPPIALTILSYLA--ALGNAGLMAVPCIIGQV 789
            IFVISG  LKT +  QA  +G G  G+  G V IL LT L GF+ VR+P+   EF YGLA+F  VPTTL+SGVTLV  A GN ALAL+LTV+TN++GV TVPF   AV++ G             D+   AV LL KL+ T+L+PI+LGK ARE +P  A +A  RK  L+LT+++ LI+V W+S+S+S++++       + AV   A +   + L+   A     GL  P R   A V+M S+K  P+A+TI+SYL     G+ GL+A+PCI+  +
Sbjct:   47 IFVISGATLKTEEITQALKAGRGALGY--GWVAILGLTPLLGFILVRVPYKPIEFRYGLALFCCVPTTLTSGVTLVRNAKGNVALALMLTVSTNLIGVFTVPFYFNAVVASGPREMASAVNGAANDMSTQAVKLLVKLLFTILLPIVLGKVAREMIPAVAAFANARKAELTLTNNSCLIIVVWMSISKSAKELIDTNVGTIFAVLFAAVLVHVVFLAINYAATHALGLSGPERV--ACVMMSSQKTLPVAMTIISYLPEDVFGSGGLIAIPCIVCHI 319          
BLAST of mRNA_P-wetherbeei_contig1956.3.3 vs. uniprot
Match: A0A6H5KQQ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQQ7_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 5.450e-54
Identity = 121/239 (50.63%), Postives = 147/239 (61.51%), Query Frame = 1
Query:    1 IFVISGLKLKTSDAQAATSGPGRAGFLFGVVTILFLTSLTGFVAVRIPFGVPEFSYGLAVFRTVPTTLSSGVTLVA-----------------------------------LAGGNDALALLLTVATNVLGVATVPFLLRAVLSGGVADVHIDAVVLLGKLIVTVLVPILLGKAARERLPGAAGWARRRKVPLSLTSSAMLIMVFWLSLSESSEDVKRVAPADLLAVRQRAAIASAISL 612
            IF+ISGL LKT D + A S  GR G+++GVV IL +T   GFVA  IPF V EFSYGL+VF  VPTTLSSGVTLV                                     AGGNDALALLLTV TN+LGV TVPF ++ V++ G  D  ID V LL KLI++VLVP+++GK  RE +PGA  W +R KV LSLTSSAMLIMV W +LS + +++  VA   +L+V     IAS I L
Sbjct:   61 IFIISGLTLKTDDIKEALSKEGRWGYIYGVVAILGITGAVGFVAAEIPFDVDEFSYGLSVFCVVPTTLSSGVTLVMNHHLLRSVEWFSLHGVSRCFVAFFTSCAPPFTLSPQAGGNDALALLLTVTTNLLGVVTVPFYVKGVVNAG-DDASIDPVGLLVKLIISVLVPLVVGKVIREAVPGAKAWVKRFKVRLSLTSSAMLIMVVWQTLSRAQDNLTSVAFTQILSV-----IASGIGL 293          
BLAST of mRNA_P-wetherbeei_contig1956.3.3 vs. uniprot
Match: A0A061RZ11_9CHLO (Cysteine proteinase cathepsin f n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RZ11_9CHLO)

HSP 1 Score: 183 bits (464), Expect = 1.440e-51
Identity = 118/272 (43.38%), Postives = 162/272 (59.56%), Query Frame = 1
Query:    1 IFVISGLKLKTSDAQAATSGPGRAGFLFGVVTILFLTSLTGFVAVRIPFGVPEFSYGLAVFRTVPTTLSSGVTLVALAGGNDALALLLTVATNVLGVATVPFLLRAVL-----SGGVADVHIDAVVLLGKLIVTVLVPILLGKAARERLPGAAGWARRRKVPLSLTSSAMLIMVFWLSLSESSEDVKRVAPADLLAVRQRAAIASAISLSG---GLAGLCCYGLKLPPREMKAVVIMGSEKAPPIALTILSYLAA-LGNAGLMAVPCIIGQV 789
            IF++SGL LKTS+  AA        + +G++ ILFLT   G   ++IPF  P F  G AVF +VPTTL+SGVTLV  A GN ALAL+LTV TNVLGV T P +L   L     S     +  D   L+ KL+ T+L P + GK  RE     + W    K  LSLT++++LI + W+++S S  DV    PA+++ +    AIA  I+L      L G  C+ L+L P E KA  I+GS+K  P+++T+LS+L   LGN GL+ +PCIIG +
Sbjct:  110 IFIVSGLTLKTSEVTAAIKA--WLAYTYGIIAILFLTPFAGLAILQIPFEEPAFGVGFAVFCSVPTTLTSGVTLVNQAAGNGALALMLTVTTNVLGVFTTPLMLALNLRVSGMSAETGTITFDTGALIVKLVATILAPTVFGKLVRESHHSVSDWVAGHKTLLSLTNNSLLICIVWMTIS-SGRDVIVAQPAEMIFL----AIAVGIALHAVLLALNGAACWLLRLAPPERKAAHILGSQKTLPVSITVLSFLPPRLGNIGLLTIPCIIGHL 374          
BLAST of mRNA_P-wetherbeei_contig1956.3.3 vs. uniprot
Match: C1E9H5_MICCC (Bile Acid:Na+ symporter family n=2 Tax=Micromonas TaxID=38832 RepID=C1E9H5_MICCC)

HSP 1 Score: 181 bits (458), Expect = 4.800e-51
Identity = 118/273 (43.22%), Postives = 169/273 (61.90%), Query Frame = 1
Query:    1 IFVISGLKLKTSDAQAATSGPGRAGFLFGVVTILFLTSLTGFVAVRIPFGVPEFSYGLAVFRTVPTTLSSGVTLVALAGGNDALALLLTVATNVLGVATVPFLLRAVL-------SGGV-ADVHIDAVVLLGKLIVTVLVPILLGKAARERLPGAAGWARRRKVPLSLTSSAMLIMVFWLSLSESSEDVKRVAPADLLAVRQRAAIASAISLSGGLAGLCCYGLKLPPREMKAVVIMGSEKAPPIALTILSYL--AALGNAGLMAVPCIIGQV 789
            IF ISGL LKT+D + A   P  A   +G++TIL +T + GFV V+IPF   EF YGLA+F  VPTTL+SGVTLV  A GN  +AL+LTV TNVLGV TVPF+L AVL       SGG   D+   A  LL KLI+++++P+ +GKA RE +  A  +  + K  L LT+++ LI + W+S+S S   + R +  ++  +     +     L+     +    +K+P  E +AV++M S+K  P+A+TI++YL  A  G  GL+A+PCI+G V
Sbjct:   68 IFFISGLTLKTADIKKALGQP--AALAYGIITILLVTPMMGFVVVQIPFEPVEFRYGLALFACVPTTLTSGVTLVTSALGNGVMALMLTVTTNVLGVFTVPFILNAVLLSAPGGDSGGTDTDMAETAAKLLLKLIISIIIPMGVGKATREFVEQAPSFTTKYKTELGLTNNSCLIAIVWMSISNSRGKLVRESALNIFVIVVAGVLLHLFFLTMNWV-MTTAVMKIPEAERRAVLLMTSQKTLPVAVTIIAYLDEARWGAQGLIAIPCIVGHV 337          
BLAST of mRNA_P-wetherbeei_contig1956.3.3 vs. uniprot
Match: A0A383W7R8_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W7R8_TETOB)

HSP 1 Score: 179 bits (454), Expect = 2.420e-50
Identity = 122/266 (45.86%), Postives = 169/266 (63.53%), Query Frame = 1
Query:    1 IFVISGLKLKTSDAQAATSGPGRAGFLFGVVTILFLTSLTGFVAVRIPFGVPEFSYGLAVFRTVPTTLSSGVTLVALAGGNDALALLLTVATNVLGVATVPFLLRAVLS-GGVADVHIDAVVLLGKLIVTVLVPILLGKAARERLPGAAGWARRRKVPLSLTSSAMLIMVFWLSLSESSEDV-KRVAPADLLAVRQRAAIASAISLSGGLAGLCCYGLKLPPREMKAVVIMGSEKAPPIALTILSYLA-ALGNAGLMAVPCIIGQV 789
            +F+ISGL LK+ D +A        G L+G++ IL +T   GF  + IPF  PEF+ GLA+F  VPTTL  GV L A + GN ALALLLTVATN+LG+ TVP+ LR VLS G V+ V ++   L+ KLI+TVLVP ++GK AR+       +  R K PLSL S+  L  + W +LS + + + ++   A LL V   + +   + L  GL  +  Y L+LP RE  AVVIM S+K+ P+A+T++SYL  +L   GLMA+PCI+GQ+
Sbjct:  128 VFLISGLTLKSDDFRALLKH--WVGVLYGLIAILAITPCLGFAMLAIPFQPPEFATGLALFCVVPTTLGVGVALTAASKGNQALALLLTVATNLLGIVTVPYELRLVLSTGSVSTVSVEPGSLVVKLILTVLVPSVIGKLARDLFKPVQRFVTRFKTPLSLFSTLNLACIVWQTLSGARQTLLQQPFVAVLLVVVASSLLHVVMLLFNGL--VVRYLLRLPFREAVAVVIMSSQKSAPVAVTVISYLTPSLTQQGLMAIPCILGQL 389          
BLAST of mRNA_P-wetherbeei_contig1956.3.3 vs. uniprot
Match: A0A1Y5HY24_OSTTA (Cysteine proteinase cathepsin F n=2 Tax=Ostreococcus tauri TaxID=70448 RepID=A0A1Y5HY24_OSTTA)

HSP 1 Score: 181 bits (460), Expect = 1.680e-48
Identity = 118/276 (42.75%), Postives = 171/276 (61.96%), Query Frame = 1
Query:    1 IFVISGLKLKTSDAQAATSGPGRAGFLFGVVTILFLTSLTGFVAVRIPFGVPEFSYGLAVFRTVPTTLSSGVTLVALAGGNDALALLLTVATNVLGVATVPFLLRAVLSGGVA-----------DVHIDAVVLLGKLIVTVLVPILLGKAARERLPGAAGWARRRKVPLSLTSSAMLIMVFWLSLSESSEDVKRVAPADLLAVRQRAAIASAISLSGGLAGLCCYGLKLPPREMKAVVIMGSEKAPPIALTILSYLA--ALGNAGLMAVPCIIGQV 789
            IF+ISG  LKT +  +A +  GR  +++G V+IL LT + GF+AV +P+   E+ YGLA+F  VPTTL+SGVTLV  A GN ALA++LTV+TN++GV TVPF   AV++ G A           ++   A+ LL KLI T+LVPI+ GK ARE  P  +  A + K  L+LT+++ LI+V W+S+S+SS ++K      + AV     +   + L     G   +G+  P R   A V+M S+K  P+A+TI+SYL     G+ GL+AVPCI+  +
Sbjct:  625 IFIISGATLKTEEISSALAS-GRRAYVYGAVSILGLTPVLGFLAVWLPYKPREYRYGLALFCCVPTTLTSGVTLVRNAKGNVALAMMLTVSTNLIGVFTVPFYYNAVVASGPALSGAVERSLTSEMTKQAIKLLVKLIFTILVPIVFGKLARESWPALSAAATKYKQELTLTNNSCLIIVVWMSISKSSSELKSTDAGTIFAVMFAGIVLHLVMLGINYVGTHAFGICGPERV--ASVMMSSQKTLPVAMTIISYLPEDVFGSPGLIAVPCIVCHI 897          
BLAST of mRNA_P-wetherbeei_contig1956.3.3 vs. uniprot
Match: A0A835VX41_CHLIN (Uncharacterized protein n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A835VX41_CHLIN)

HSP 1 Score: 172 bits (437), Expect = 6.460e-48
Identity = 117/270 (43.33%), Postives = 160/270 (59.26%), Query Frame = 1
Query:    1 IFVISGLKLKTSDAQAATSGPGRAGFLFGVVTILFLTSLTGFVAVRIPFGVPEFSYGLAVFRTVPTTLSSGVTLVALAGGNDALALLLTVATNVLGVATVPFLLRAVL------SGGVADVHIDAVVLLGKLIVTVLVPILLGKAARERLPGAAGWARRRKVPLSLTSSAMLIMVFWLSLSESSEDVKRVAPADLLAVRQRAAIASAISLSGGLAGLCCYGLKLPPREMKAVVIMGSEKAPPIALTILSYLAAL-GNAGLMAVPCIIGQV 789
            +F+ISGL+L T D +AA S        +G+V IL LT L G+    +P    EF+ GLAVF   PTTL  GV L A  GGN+ALALLLTVATN L V T+P  L+ +L      + G   ++++   LL KL  TVLVP  LGKAARE LPGAA +A+  +  LS+ S+A L  V W +LS S+ D+    P   LA    AA+   +        +  + L+ P RE  AV IM S+K+ P+A+T++SYL++     GLMA+P ++GQ+
Sbjct:   76 VFLISGLQLDTKDMRAALSARNLPALAYGLVAILALTPLLGYALRELPLEPKEFATGLAVFSVAPTTLGVGVALTAACGGNEALALLLTVATNALAVFTMPPELQLLLPPAAEGAAGAGALNVNVYDLLTKLAATVLVPFALGKAAREYLPGAAAFAKAHRTRLSMFSTAALAFVVWQTLS-SARDLLLEQPPGALAAMVAAALGMHLFYLVANFAVVWHVLRPPLREAIAVGIMASQKSAPVAVTVISYLSSNPAQQGLMALPAVVGQM 344          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1956.3.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQA3_ECTSI3.660e-7554.31Cysteine proteinase Cathepsin F (ISS) n=2 Tax=Ecto... [more]
A0A836CLX8_9STRA3.080e-6547.74Cysteine proteinase cathepsin F n=1 Tax=Tribonema ... [more]
A0A836CJ89_9STRA1.540e-5644.66Cysteine proteinase cathepsin F n=1 Tax=Tribonema ... [more]
A4RT86_OSTLU7.910e-5545.13BASS family transporter: sodium ion/bile acid (Fra... [more]
A0A6H5KQQ7_9PHAE5.450e-5450.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A061RZ11_9CHLO1.440e-5143.38Cysteine proteinase cathepsin f n=1 Tax=Tetraselmi... [more]
C1E9H5_MICCC4.800e-5143.22Bile Acid:Na+ symporter family n=2 Tax=Micromonas ... [more]
A0A383W7R8_TETOB2.420e-5045.86Uncharacterized protein n=1 Tax=Tetradesmus obliqu... [more]
A0A1Y5HY24_OSTTA1.680e-4842.75Cysteine proteinase cathepsin F n=2 Tax=Ostreococc... [more]
A0A835VX41_CHLIN6.460e-4843.33Uncharacterized protein n=1 Tax=Chlamydomonas ince... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1956contigP-wetherbeei_contig1956:4402..6209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQA3
PFAMsSBF_like
Model size790
Max annot lvl2759|Eukaryota
KEGG koko:K14347
KEGG TC2.A.93.1
Hectar predicted targeting categorysignal anchor
Exons3
Evalue6.01e-76
EggNOG OGsCOG0385@1|root,KOG4821@2759|Eukaryota
Descriptionsymporter activity
Cds size789
COG categoryJ
BRITEko00000,ko02000,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186176.0319877-CDS-P-wetherbeei_contig1956:4401..45511683186176.0319877-CDS-P-wetherbeei_contig1956:4401..4551Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1956 4402..4551 -
1683186176.043392-CDS-P-wetherbeei_contig1956:5266..57161683186176.043392-CDS-P-wetherbeei_contig1956:5266..5716Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1956 5267..5716 -
1683186176.0550065-CDS-P-wetherbeei_contig1956:6020..62091683186176.0550065-CDS-P-wetherbeei_contig1956:6020..6209Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1956 6021..6209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1956.3.3prot_P-wetherbeei_contig1956.3.3Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1956 4402..6209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1956.3.3

>prot_P-wetherbeei_contig1956.3.3 ID=prot_P-wetherbeei_contig1956.3.3|Name=mRNA_P-wetherbeei_contig1956.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=263bp
IFVISGLKLKTSDAQAATSGPGRAGFLFGVVTILFLTSLTGFVAVRIPFG
VPEFSYGLAVFRTVPTTLSSGVTLVALAGGNDALALLLTVATNVLGVATV
PFLLRAVLSGGVADVHIDAVVLLGKLIVTVLVPILLGKAARERLPGAAGW
ARRRKVPLSLTSSAMLIMVFWLSLSESSEDVKRVAPADLLAVRQRAAIAS
AISLSGGLAGLCCYGLKLPPREMKAVVIMGSEKAPPIALTILSYLAALGN
AGLMAVPCIIGQV
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mRNA from alignment at P-wetherbeei_contig1956:4402..6209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1956.3.3 ID=mRNA_P-wetherbeei_contig1956.3.3|Name=mRNA_P-wetherbeei_contig1956.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1808bp|location=Sequence derived from alignment at P-wetherbeei_contig1956:4402..6209- (Phaeothamnion wetherbeei SAG_119_79)
ATATTCGTGATCAGCGGCCTGAAGCTCAAGACGTCCGACGCACAGGCCGC CACGAGCGGCCCGGGGCGGGCGGGCTTCCTCTTTGGCGTCGTCACTATCC TTTTTTTGACCTCGCTCACAGGCTTCGTGGCCGTGCGGATACCCTTTGGA GTCCCCGAGTTCAGCTACGGCCTCGCCGTCTTCCGCACCGTAAGTCCGTA GGAATTTAAGGACGGGGAGCCTCGTTCTGGCCACTTTGGAATGAACACGG AGCTGACGACGCCGACCACCGATCATCATGTGCTACGTCTGTGACGTCGC GTGTTATCCTTTTGGCTTCTCTCGCAACTGGCTCTTTTTATTCCTTTTTC TTGCTTATCCATGCCTATGATCCACCGCCCATTCTTGCTTATCTATGCCC TGACTCTACCGTCCATTCTTGTCTTTCCATGGCCTGAATTTACCGTCCGT TCTTACCTGTTCTTGCTACAATTTGCCCGTGCCCGTCCGTCAGGTGCCCA CGACGCTTTCGAGTGGCGTGACGCTCGTGGCGCTCGCCGGCGGCAACGAC GCGCTAGCGCTGCTGCTGACCGTGGCTACAAACGTGCTCGGCGTCGCCAC AGTCCCGTTCCTCCTACGCGCCGTTCTCAGCGGCGGCGTTGCCGACGTTC ACATCGACGCCGTGGTGCTCCTCGGCAAACTGATCGTCACCGTTCTTGTG CCCATTCTGCTCGGCAAGGCGGCGAGGGAGCGGCTGCCGGGCGCCGCCGG CTGGGCGCGGCGACGCAAGGTGCCGCTGTCGCTGACGTCTTCGGCGATGC TCATCATGGTCTTTTGGCTCAGCCTGAGCGAGTCATCCGAGGACGTGAAA CGCGTCGCCCCCGCCGACTTGCTCGCTGTAAGGCAGCGAGCAGCAATAGC GAGCGCCATTAGTCTATCTGGCGGGTTGGCGGGCTTGTGCTGCGTCGCAT TTCCTTCCGCCCTGCCGTTTGCTGCTCTCACAGTGCTTCGTTCGGGGGCG GCGCGCGAGCGGGCTACCTTGTGTTGCTTCCTACCATTCGGCGCACAGCG CGAGGCTTTCCATCCTCCTTTTGACTACATCGTTTGGCGAGGTCTTCGGG CCGGCGGCCAGAGAGAGACTCGACAAGAAGAAGAGAAAGCAATTACTATG TATCGTTTTCCCGTTCTTAACCATCTTTTCTTGCTGTATGCTTCCTTCCT GCGGGCGGGCAGGTCACCCTGGCGGGCATGGCACTCCACGCGGTTAGCGT GGCCTTTAACTTCGCTGTCGTGCAGGCGAGTGCTTTGTAGCTGCCGTTTT TCTGTCTGACTGATGGCTCCTCATGGAGCGGTGGCTGCGTTGGCGAGGGC GGGCGATGCTGGAAGGGCCCGTTCCCCAGCTGCTGCGTTCTGCTTCTGTG GGCCATCTTCACTCACCTCAAGATATTTGGCCGCCAAAAGTGGAAAGAAA GGGATTCCACACTTGCGCCAGCCGAGCCCTGTGCACACAACCCGCCCTCT GAGGTTTCACCCCAACCGCCGCCGCCGCCTCCGCCGCCACCGCCAACGTT GCCGCCGCCGCCGACGCCACCGCCGCTCCCGTCGCTGTCGGCACCGCCGT CGCCACTGTTGCTGCCGCCGTCCGCCGTCGCCGCCGCCTTGCTCGCTACC CCTCGCAGTACGGTCTCAAGCTGCCACCGCGCGAGATGAAGGCGGTGGTG ATAATGGGGTCTGAGAAGGCGCCGCCCATCGCCCTGACCATCCTGTCCTA CCTCGCCGCCCTCGGCAACGCTGGGCTCATGGCTGTGCCCTGCATCATCG GCCAGGTG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1956:4402..6209-

>mRNA_P-wetherbeei_contig1956.3.3 ID=mRNA_P-wetherbeei_contig1956.3.3|Name=mRNA_P-wetherbeei_contig1956.3.3|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=789bp|location=Sequence derived from alignment at P-wetherbeei_contig1956:4402..6209- (Phaeothamnion wetherbeei SAG_119_79)
ATATTCGTGATCAGCGGCCTGAAGCTCAAGACGTCCGACGCACAGGCCGC
CACGAGCGGCCCGGGGCGGGCGGGCTTCCTCTTTGGCGTCGTCACTATCC
TTTTTTTGACCTCGCTCACAGGCTTCGTGGCCGTGCGGATACCCTTTGGA
GTCCCCGAGTTCAGCTACGGCCTCGCCGTCTTCCGCACCGTGCCCACGAC
GCTTTCGAGTGGCGTGACGCTCGTGGCGCTCGCCGGCGGCAACGACGCGC
TAGCGCTGCTGCTGACCGTGGCTACAAACGTGCTCGGCGTCGCCACAGTC
CCGTTCCTCCTACGCGCCGTTCTCAGCGGCGGCGTTGCCGACGTTCACAT
CGACGCCGTGGTGCTCCTCGGCAAACTGATCGTCACCGTTCTTGTGCCCA
TTCTGCTCGGCAAGGCGGCGAGGGAGCGGCTGCCGGGCGCCGCCGGCTGG
GCGCGGCGACGCAAGGTGCCGCTGTCGCTGACGTCTTCGGCGATGCTCAT
CATGGTCTTTTGGCTCAGCCTGAGCGAGTCATCCGAGGACGTGAAACGCG
TCGCCCCCGCCGACTTGCTCGCTGTAAGGCAGCGAGCAGCAATAGCGAGC
GCCATTAGTCTATCTGGCGGGTTGGCGGGCTTGTGCTGCTACGGTCTCAA
GCTGCCACCGCGCGAGATGAAGGCGGTGGTGATAATGGGGTCTGAGAAGG
CGCCGCCCATCGCCCTGACCATCCTGTCCTACCTCGCCGCCCTCGGCAAC
GCTGGGCTCATGGCTGTGCCCTGCATCATCGGCCAGGTG
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