mRNA_P-wetherbeei_contig19555.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19555.1.1
Unique NamemRNA_P-wetherbeei_contig19555.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19555.1.1 vs. uniprot
Match: A0A7X9AH86_9BURK (DEAD/DEAH box helicase n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X9AH86_9BURK)

HSP 1 Score: 469 bits (1207), Expect = 7.710e-162
Identity = 239/378 (63.23%), Postives = 287/378 (75.93%), Query Frame = 1
Query:    1 IEDNCQRVAEDNELVQDGARFTLTEHQTRAIAEVGERLQNGEVKLLLKAPTGSGKTEVFFRSAVNQVLSSGKHVVIMVPTRDLARQQANYFEERLQGTDLEIIQMHAGIPPRTRRNQLDDFGQGNVKVVVGSAMMLKGAAHRRLLDDAGLLIVDDVNAFDEDEDLVNLRGLRCPILYVTATPEAVGKFLGREGVLTNPVLITQTPFDSPPTVLHEVRGEWNENIFKQMDRAMDMLKHHVEVGSRIYLISKTRARVPIMAQYVLDRLGVPVSILHGEMADSIEHKKRQRKTKGGPVTASMGGNVTEDRVSMMKQFRENSPAVLVATNLVGSGLDVPMADLVVVTDADHFGAAEIEQLMGRVGRREKASDAVLIKGTAAS 1134
            IE+N QRVAE  ELVQ G  F LT HQ  AIAEV  RL  G+ ++LLKAPTGSGKTEV  R AV +VL +G+HVV++ PTRDLARQQ  YF +RL GT LE +QMHAGIPPR R+  L+    G V   +GSAM+L+   +R LL+ A L+IVDDVNAFDEDEDL +LRGL  P+L+ +ATPEAV +FL REG     V +T  PFDSPPT  HEV   WNENIF Q+D  MD+L+ H+E GSRIY+IS+TRARVPI+A+Y+ DR+GVPVS+LHGEMADS+EH++R R   G      +     EDRVSMM+QFREN PA++VATNLVGSGLD+PMAD+V+VTDADHFG AEIEQL+GRVGRRE+ SD VLI GT  S
Sbjct:   10 IEENVQRVAEQGELVQPGQTFALTRHQEYAIAEVDSRLTEGKDRILLKAPTGSGKTEVSLRVAVQRVLDTGRHVVMLAPTRDLARQQHMYFADRLAGTGLECVQMHAGIPPRDRQRSLEQLMAGKVSFAIGSAMLLQQRKYRNLLETASLVIVDDVNAFDEDEDLAHLRGLAAPVLFTSATPEAVERFLKREGAWRETVTMTDMPFDSPPTRRHEVPASWNENIFTQIDLGMDILRRHIEAGSRIYVISRTRARVPILARYIEDRVGVPVSMLHGEMADSLEHRRRSR---GNSADMPL-----EDRVSMMRQFRENKPAIMVATNLVGSGLDIPMADMVLVTDADHFGEAEIEQLVGRVGRRERESDCVLITGTTTS 379          
BLAST of mRNA_P-wetherbeei_contig19555.1.1 vs. uniprot
Match: A0A355UV81_9CYAN (Uncharacterized protein n=1 Tax=Cyanobacteria bacterium UBA8530 TaxID=2055790 RepID=A0A355UV81_9CYAN)

HSP 1 Score: 304 bits (779), Expect = 2.500e-97
Identity = 170/384 (44.27%), Postives = 244/384 (63.54%), Query Frame = 1
Query:    1 IEDNCQRVAEDNELVQDGARFTLTEHQTRAIAEVGERLQNGEVKLLLKAPTGSGKTEVFFRSAVNQVLSSGKHVVIMVPTRDLARQQANYFEERLQGTDLEIIQMHAGIPPRTRRNQLDDFGQGNVKVVVGSAMMLKGAAHRRLLDDAGLLIVDDVNAFDEDEDLVNLRGLRCPILYVTATPEAVGKFLGREGVLTNPVLITQTPFDSPPTVLHEVRGEWNENIFKQMDRAMDMLKHHVEVGSRIYLISKTRARVPIMAQYVLDRLGVPVSILHGEMADSIEHKKRQRKTKGGPVTASMGGNVTEDRVSMMKQFRENSPAVLVATNLVGSGLDVPMADLVVVTDADHFGAAEIEQLMGRVGRREKASDAVLIKGTAASAPRGQM 1152
            +++N Q  AE + LV  G  + LT+ Q +AI E+G   +      LL APTGSGKT+V  R AV +V+ + + V+I+VPTRDLARQ   YF +RL+ T L   ++H GI    R+  L  FG+G   + V S+++L       LL    LL+VDDVNA+D ++ L  L+ L  P+L+ TATPE V  FL  + +  + V +   PF++PPT +H ++    E    Q++RA  +++ H++   RI++IS+TRA VP +   + D  G+PV++LHGEMADS +  KR  K  G    ++        R+ MM++FR++ PA+LV+TNLVG+GLDVP ADLVVVTDAD FG AE+EQL+GRVGRR + SDA LI G  A+AP+ Q+
Sbjct:   11 LKENEQAAAEKDGLVPTGESYQLTKDQEKAILELGGFFEREAGNALLVAPTGSGKTQVLLRIAVCEVMRTRRPVIILVPTRDLARQHLRYFSDRLKNTPLYTAEIHGGIAAPVRKELLASFGRGRHHIGVASSLILTDPHWEPLLKGVALLVVDDVNAYDPEDALRRLKSLSIPMLFSTATPEPVEGFLKLKNI-QHRVSMESMPFEAPPTTIHTLKARAGERPTAQVERARKLIEKHIKSEGRIFVISRTRAEVPFLTYALRDAYGIPVAMLHGEMADSRDMAKRLEKFGGKRPPST--------RIYMMRRFRDSLPAILVSTNLVGAGLDVPAADLVVVTDADSFGQAELEQLIGRVGRRNRQSDACLIVG--ATAPKKQL 383          
BLAST of mRNA_P-wetherbeei_contig19555.1.1 vs. uniprot
Match: A0A661JWI6_9DELT (Transcription-repair-coupling factor n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661JWI6_9DELT)

HSP 1 Score: 124 bits (310), Expect = 4.460e-27
Identity = 100/372 (26.88%), Postives = 175/372 (47.04%), Query Frame = 1
Query:   31 DNELVQD---GARFTLTEHQTRAIAEVGERLQNG-EVKLLLKAPTGSGKTEVFFRSAVNQVLSSGKHVVIMVPTRDLARQQANYFEERLQGTDLEIIQMHAGIPPRTRRNQLDDFGQGNVKVVVGSAMMLKGAAHRRLLDDAGLLIVDDVNAFD--EDEDLVNLRGLRCPILYVTATPEAVGKFLGREGVLTNPVLITQTPFDSPPTVLHEVR---GEWNENIFKQMDRAMDMLKHHVEVGSRIYLISKTRARVPIMAQYVLDRL-GVPVSILHGEMADSIEHKKRQRKTKGGPVTASMGGNVTEDRVSMMKQFRENSPAVLVATNLVGSGLDVPMADLVVVTDADHFGAAEIEQLMGRVGRREKASDAVLI 1116
            D ELV+D   G  +  T+ Q + I +V + + +   +  L+    G GKTEV  R++   V+  GK V I+VPT  LA Q    F ER     + +  + + +  R+ R+ ++D G+G V +++G+  +L   + R    D GLL+VD+ + F     E +  +R     +L ++ATP      +   G+    V+      ++PP     +      ++++I KQ       ++  +  G +++ +      +  MAQYV   + G  V + HG+M                         +  D   +M +F +    VLV + ++GSGLD+P A+ ++V  AD FG A++ QL GRVGR +    A+L+
Sbjct:  589 DEELVRDFASGFIYNETDDQLKTIEQVYDDMSSSMPMDRLVCGDVGYGKTEVALRASFVAVMQ-GKQVAILVPTTILAHQHLMTFRERFNAWPVRVEALTSSMGSRSNRSLIEDVGKGRVDILIGTHALL---SERLRFKDLGLLVVDEEHRFGVRHKERIKKMRS-EVDVLTLSATPIPRTLHMAISGIRDLSVI------ETPPAERKSIETTIARFDDDIIKQA------IEREISRGGQVFFVHNRVFNIDSMAQYVRQLVPGARVGVAHGQM-------------------------LRNDLNRVMSRFIDRDINVLVCSAIIGSGLDIPNANTIIVNRADRFGMADLYQLRGRVGRSKLKGYALLL 918          
BLAST of mRNA_P-wetherbeei_contig19555.1.1 vs. uniprot
Match: R6I9V4_9FIRM (Transcription-repair-coupling factor n=6 Tax=Phascolarctobacterium faecium TaxID=33025 RepID=R6I9V4_9FIRM)

HSP 1 Score: 114 bits (286), Expect = 5.700e-24
Identity = 103/370 (27.84%), Postives = 180/370 (48.65%), Query Frame = 1
Query:   25 AEDNELVQD-GARFTLTE--HQTRAIAEVGERLQNGE-VKLLLKAPTGSGKTEVFFRSAVNQVLSSGKHVVIMVPTRDLARQQANYFEERLQGTDLEIIQMHAGIPPRTRRNQLDDFGQGNVKVVVGSAMMLKGAAHRRLLDDAGLLIVDDVNAFD-EDEDLVNLRGLRCPILYVTATPEAVGKFLGREGVLTNPVLITQTPFDSPPTVLHEVRGEWNENIFKQMDRAMDMLKHHVEVGSRIYLISKTRARVPIMAQYVLDRL-GVPVSILHGEMADSIEHKKRQRKTKGGPVTASMGGNVTEDRVSMMKQFRENSPAVLVATNLVGSGLDVPMADLVVVTDADHFGAAEIEQLMGRVGRREKASDAVLI 1116
            AED E  +D   RF   E   Q +AIAE+   ++  E +  LL    G GKTEV  R+A   V+  GK V +MVPT  LA+Q    F+ER+Q   +++  +     PR ++  L+D   G V V++G+  +L+      L  D GLL++D+   F    ++ +        +L ++ATP  + + L    V    + + ++P +    V   V  E+N  + K+       L+  +  G RIY +      +  +A  +   + G+ + I HG+M++                      ++ ED    M  F E S  VL++T+++ +GLDVP+A+ +++  A++FG +++ Q+ GRVGR  + + A  +
Sbjct:  534 AEDTEWQRDFEERFPYEETPDQLKAIAEIKADMEKPEPMDRLLCGDVGYGKTEVAIRAAFKAVMD-GKQVAVMVPTTVLAQQHFMTFKERMQPFGVKVEMVSRFCTPREQKRILNDLENGQVDVLIGTHRLLQQDV---LFPDLGLLVIDEEQRFGVAQKEKIKRWKTGVDVLTLSATP--IPRTLHLALVNGRDMSVIESPPEERLPVETYV-AEYNPGMIKEA------LEREMRRGGRIYYVHNRVLGLENIAADLRSLVPGINIRIAHGQMSE----------------------DMLEDA---MIAFYEGSCDVLLSTSIIENGLDVPLANTIIIDGAENFGLSQLYQMRGRVGRSSRLAYAYFV 865          
BLAST of mRNA_P-wetherbeei_contig19555.1.1 vs. uniprot
Match: A0A1G1WR00_9BACT (Uncharacterized protein n=1 Tax=Candidatus Woykebacteria bacterium RIFCSPHIGHO2_12_FULL_45_10 TaxID=1802603 RepID=A0A1G1WR00_9BACT)

HSP 1 Score: 114 bits (284), Expect = 6.740e-24
Identity = 99/366 (27.05%), Postives = 170/366 (46.45%), Query Frame = 1
Query:   43 VQDGARFTLTEHQTRAIAEVGERLQNGE-VKLLLKAPTGSGKTEVFFRSAVNQVLSSGKHVVIMVPTRDLARQQANYFEERLQGTDLEIIQMHAGIPPRTRRNQLDDFGQGNVKVVVGSAMMLKGAAHRRLLDDAGLLIVDDVNAFD-EDEDLVNLRGLRCPILYVTATPEAVGKFLGREGVLTNPVLITQTPFDSPPTVLHEVR---GEWNENIFKQMDRAMDMLKHHVEVGSRIYLISKTRARVPIMAQYVLDRLGVP---VSILHGEMADSIEHKKRQRKTKGGPVTASMGGNVTEDRVSMMKQFRENSPAVLVATNLVGSGLDVPMADLVVVTDADHFGAAEIEQLMGRVGRREKASDAVLI 1116
            ++D   F  T  Q +A+AE+ + L++   +  LL    G GKTEV  R+A  Q  + G+ V I+VPT  LA Q  + F +RL+   +++  +   +  R ++  +D    G+V +V+G+  +L      + L   GL IVD+ + F  E ++          IL ++ATP      + R   +    +   +P  +PP     +R   GE++E      ++    +   ++ G ++Y +     ++ I   Y +  L VP   V+  HG M D+   K                          M +F E    VLV T ++GSGLD+P  + +++ D+ +FG A++ QL GRVGR E+ + A L 
Sbjct:  218 LEDSFEFQETADQIKAVAEIKKDLESSRPMDRLLIGDVGFGKTEVAIRAAF-QAAADGRQVAILVPTTILAEQHYHLFRDRLKSFPVKVEILSRFVDERLQKVVVDGLKNGSVDIVIGTHRLLSKDIEFKNL---GLAIVDEEHRFGVEAKEKFKKMRQDIDILSLSATP------IPRTLQMALAKIRQVSPLTTPPDNRQPIRTSIGEFDE------EKVGQAINDEIKRGGQVYYVYNHIPKI-INKAYKIQNL-VPKAKVAFAHGRMGDAELEKT-------------------------MNEFYEGKTDVLVCTTIIGSGLDMPNVNTIIIEDSQNFGLADLYQLRGRVGRSEREAYAFLF 540          
BLAST of mRNA_P-wetherbeei_contig19555.1.1 vs. uniprot
Match: T0HFM8_9SPHN (ATP-dependent DNA helicase RecG n=3 Tax=Sphingobium TaxID=165695 RepID=T0HFM8_9SPHN)

HSP 1 Score: 114 bits (284), Expect = 7.950e-24
Identity = 100/367 (27.25%), Postives = 162/367 (44.14%), Query Frame = 1
Query:   61 FTLTEHQTRAIAEV-GERLQNGEVKLLLKAPTGSGKTEVFFRSAVNQVLSSGKHVVIMVPTRDLARQQANYFEERLQGTDLEIIQMHAGIPPRTRRNQLDDFGQGNVKVVVGSAMMLKGAAHRRLLDDAGLLIVDDVNAFDEDEDLVNL-RGLRCP-ILYVTATPEAVGKFLGREGVLTNPVLITQTPFDSPPTVLHEVRGEWNENIFKQMDRAMDMLKHHVEVGSRIYLI--------SKTRARVPIMAQYVLDRLGVPVSILHGEMADSIEHKKRQRKTKGGPVTASMGGNVTEDRVSMMKQFRENSPAVLVATNLVGSGLDVPMADLVVVTDADHFGAAEIEQLMGRVGRREKASDAVLIKGTA 1128
            F  T  Q RAI E+ G+  Q+  +  LL+   GSGKT V   + +N V  +G    ++ PT  LARQ      +   G  +EI  +      + R   L     G++ ++VG+  + + A   + L   GL ++D+ + F   + ++   +  R P +L +TATP      L   G +    L    P   P   L             ++D  +D L  HVE G + Y +        +  +A     A+ +  R G  V ++HG M               GP           ++ + M+ F  N   +LVAT ++  G+DVP + L+++  AD FG A++ QL GRVGR +K S  +L++G A
Sbjct:  257 FAPTGAQRRAIGEIEGDMAQSTPMLRLLQGDVGSGKTLVALMALLNAV-EAGMQGAMLAPTEILARQHHETLRKMTSGLPIEIAILTGREKGKVREATLMGLADGSIDILVGTHAIFQEAVRYKAL---GLAVIDEQHRFGVAQRMMLANKAERAPHLLVMTATPIPRTLTLTYYGEMDVSRLDEMPPGRQPIQTLVMAAS--------RLDEVVDALARHVESGGQAYWVCPLVEESETSDQAAAEARAESLRLRFGDRVGLVHGRMK--------------GP-----------EKDAAMEAFAGNRTQILVATTVIEVGVDVPNSSLIIIEGADRFGLAQLHQLRGRVGRGDKPSTCLLLRGNA 586          
BLAST of mRNA_P-wetherbeei_contig19555.1.1 vs. uniprot
Match: A0A847GH51_9BACT (Transcription-repair-coupling factor n=1 Tax=Candidatus Hydrogenedens sp. TaxID=2654184 RepID=A0A847GH51_9BACT)

HSP 1 Score: 114 bits (284), Expect = 1.030e-23
Identity = 101/361 (27.98%), Postives = 170/361 (47.09%), Query Frame = 1
Query:   46 QDGARFTLTEHQTRAIAEVGERLQNGE-VKLLLKAPTGSGKTEVFFRSAVNQVLSSGKHVVIMVPTRDLARQQANYFEERLQGTDLEIIQMHAGIPPRTRRNQLDDFGQGNVKVVVGSAMMLKGAAHRRLLDDAGLLIVDDVNAFD--EDEDLVNLRGLRCPILYVTATPEAVGKFLGREGVLTNPVLITQTPFDSPPTVLHEVRGEWNENIFKQ-MDRAMDMLKHHVEVGSRIYLISKTRARVPIMAQYVLDRLGVPVSILHGEMADSIEHKKRQRKTKGGPVTASMGGNVTEDRVSMMKQFRENSPAVLVATNLVGSGLDVPMADLVVVTDADHFGAAEIEQLMGRVGRREKASDAVLI 1116
            +D   +  T  Q RAIAEV   +++   +  LL    G GKTEV  R+A   V+  GK VV++ PT  LA+Q  N F ERL    + +  ++    PR ++  +     G V +V+G+  +L      +   D GL+++D+   F     E L  +R     +L ++ATP      +   GV    V+ T  P D  P  +H     W++N+ ++ ++R +        + +R+  I K    V    Q ++ R  + +   HG+M    +H+                    ED   +M  F   +  +LV T ++GSG+D+P A+ ++V  ADHFG +++ Q+ GRVGR +  + A L+
Sbjct:  539 EDAFEYEETPDQARAIAEVKRDMESPRPMDRLLCGDVGYGKTEVALRAAFKSVMD-GKQVVLLAPTTVLAQQHFNTFRERLADYPVRLDLLNRFRTPRQQKETISRLKAGEVDIVIGTHRLLSKDVGFK---DLGLVVIDEEQRFGVAHKERLKQMRN-HVDVLTMSATPIPRTLHMSLIGVRDMSVINT-APNDRLP--IHTCIEAWDQNLLREAVERELGRQGQVFFLHNRVQTIEK----VATFLQKMVPRARIGIG--HGQME---KHE-------------------LED---VMAAFINRALDILVCTTIIGSGIDIPNANTIIVDRADHFGLSQLYQIRGRVGRYKHRAFAYLL 860          
BLAST of mRNA_P-wetherbeei_contig19555.1.1 vs. uniprot
Match: A0A843RJI0_9PROT (Transcription-repair-coupling factor n=1 Tax=Kiloniellaceae bacterium TaxID=2480820 RepID=A0A843RJI0_9PROT)

HSP 1 Score: 114 bits (284), Expect = 1.060e-23
Identity = 108/353 (30.59%), Postives = 165/353 (46.74%), Query Frame = 1
Query:   61 FTLTEHQTRAIAEVGERLQNGE-VKLLLKAPTGSGKTEVFFRSAVNQVLSSGKHVVIMVPTRDLARQQANYFEERLQGTDLEIIQMHAGIPPRTRRNQLDDFGQGNVKVVVGSAMMLKGAAHRRLLDDAGLLIVDDVNAFDEDEDLVNLRGLR--CPILYVTATPEAVGKFLGREGVLTNPVLITQTPFDSPPTVLHEVRG---EWNENIFKQMDRAMDMLKHHVEVGSRIYLISKTRARVPIMAQYVLDRLG-----VPVSILHGEMADSIEHKKRQRKTKGGPVTASMGGNVTEDRVSMMKQFRENSPAVLVATNLVGSGLDVPMADLVVVTDADHFGAAEIEQLMGRVGR 1086
            F  TE Q RAI +    L  G  +  L+    G GKTEV  R+A   V+S GK V ++VPT  LARQ    F+ER  G  + I Q+   +  +      D+  +G V++VVG+  +L  +   +   D GLLIVD+   F   +    L+ LR    +L +TATP      L   GV    ++ T      PP     VR     ++  I ++      +L+ H   G   Y+      RV  +A+ + +RLG     V V++ HG+MA ++  +                         +M  F +    VL++TN+V SGLD+P A+ +++  AD FG A++ QL GR+GR
Sbjct:  619 FPETEDQLRAIEDTLADLVAGRPMDRLVCGDVGFGKTEVALRAAFLAVMS-GKQVAVVVPTTLLARQHFRTFKERFSGLPVRIAQLSRLVGSKETAQAKDELARGRVEIVVGTHALLSKSISFK---DLGLLIVDEEQHFGVKQK-ERLKALREDVHVLTLTATPIPRTLQLAMSGVKEMSLIAT------PPVDRLAVRTFVLPYDPVIVREA-----ILREHYRGGQIFYVCP----RVADIAE-MQERLGRLVPEVKVAVAHGQMASTLLEE-------------------------VMTDFYDRKYDVLLSTNIVESGLDIPTANTIILHRADMFGLAQLYQLRGRIGR 925          
BLAST of mRNA_P-wetherbeei_contig19555.1.1 vs. uniprot
Match: UPI0018B00588 (DEAD/DEAH box helicase n=1 Tax=Microvirga sp. BT290 TaxID=2791024 RepID=UPI0018B00588)

HSP 1 Score: 113 bits (283), Expect = 1.360e-23
Identity = 103/346 (29.77%), Postives = 155/346 (44.80%), Query Frame = 1
Query:   61 FTLTEHQTRAIAEVGERLQNGE-VKLLLKAPTGSGKTEVFFRSAVNQVLSSGKHVVIMVPTRDLARQQANYFEERLQGTDLEIIQMHAGIPPRTRRNQLDDFGQGNVKVVVGS-AMMLKGAAHRRLLDDAGLLIVDDVNAFDEDEDLVNLRGL--RCPILYVTATPEAVGKFLGREGVLTNPVLITQTPFDSPPTVLHEVRGEWNENIFKQMDRAMDMLKHHVEVGSRIYLISKTRARVPIMAQYVLDRLGVPVSILHGEMADSIEHKKRQRKTKGGPVTASMGGNVTEDRVSMMKQFRENSPAVLVATNLVGSGLDVPMADLVVVTDADHFGAAEIEQLMGRVGR 1086
            F+ T  Q RAI EV E L +G  +  L+    G GKTEV  R+A    LS GK V ++ PT  LARQ    F+ RL G  LE+  +   +     R   +    G+V++V+G+ A+  KG   +    D GL+I+D+   F   +    LR +  R  IL +TATP          G+    V+ T      PP     +R    E  F        +++     G    + S+     P+  Q       + V + HG+M  +                       T+D   +M +F +    +L+ATN++ SGLDVP A+ ++V  AD FG +++ QL GRVGR
Sbjct:  484 FSETTDQLRAIEEVLEDLASGHPMDRLICGDVGFGKTEVALRAAAAVALS-GKQVAVLAPTTVLARQHVRSFQRRLAGFGLEVAHLSRLVTASEARAVKNGLADGSVRIVIGTHALAAKGVKFK----DLGLVIIDEEQRFGAAQK-AKLRAIASRGHILTLTATPIPRTLQSALVGLQELSVIAT------PPARRQPIRTFLTE--FDPATARQALMRERRRQGQSFVVCSRVEDLDPMREQLARIVPELKVIVAHGQMPPA----------------------ETDD---VMVRFADGEGDILLATNIIESGLDVPRANTMLVWRADRFGLSQLHQLRGRVGR 790          
BLAST of mRNA_P-wetherbeei_contig19555.1.1 vs. uniprot
Match: A0A7U6Y3F5_9PROT (Transcription-repair-coupling factor n=1 Tax=Rhodospirillaceae bacterium LM-1 TaxID=2682548 RepID=A0A7U6Y3F5_9PROT)

HSP 1 Score: 113 bits (283), Expect = 1.420e-23
Identity = 107/358 (29.89%), Postives = 164/358 (45.81%), Query Frame = 1
Query:   61 FTLTEHQTRAIAEVGERLQNGE-VKLLLKAPTGSGKTEVFFRSAVNQVLSSGKHVVIMVPTRDLARQQANYFEERLQGTDLEIIQMHAGIPPRTRRNQLDDFGQGNVKVVVGS-AMMLKGAAHRRLLDDAGLLIVDDVNAFD--EDEDLVNLRGLRCPILYVTATPEAVGKFLGREGVLTNPVLITQTPFDSPPTVLHEVRGEWNENIFKQMDRAM---DMLKHHVEVGSRIYLISKTRARVPIMAQYVLDRLGVPVSILHGEMADSIEHKKRQRKTKGGPVTASMGGNVTEDRVSMMKQFRENSPAVLVATNLVGSGLDVPMADLVVVTDADHFGAAEIEQLMGRVGRREKASDAVL 1113
            +  TE Q  A+A+V E    G  +  L+    G GKTEV  R+A    +S G+ V ++VPT  LARQ    F ER +G  + + Q+   +P +       D  +G V+++VG+ A++ K  + +    D GLLIVD+   F     E L  LR     +L +TATP      L   GV    V+ T      PP     VR        +  D  +    +L+ H   G   Y+        P +A   +DRL   +  L  E+  ++ H               +  +  ED   +M +F +    +L+ATN+V SGLD+P  + +++  AD FG A++ QL GRVGR ++   A L
Sbjct:  603 YAETEDQLAAVADVIEDFAKGRPMDRLICGDVGFGKTEVALRAAFVAAMS-GRQVAVVVPTTLLARQHYRTFTERFKGLPVRVEQLSRLVPAKQATQNKKDLAEGKVEIIVGTHALLAKSISFK----DLGLLIVDEEQHFGVAHKERLKQLRA-DVHVLTLTATPIPRTLQLALTGVREMSVIAT------PPVDRLAVR-----TFVQPFDSVLIREALLREHFRGGQSFYVC-------PRVAD--IDRLVDQLKTLVPELKLAVAH-------------GQLAPSAIED---VMTRFGDGEQDILLATNIVESGLDMPRVNTLIIHRADMFGLAQLYQLRGRVGRSKQRGYAYL 918          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19555.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7X9AH86_9BURK7.710e-16263.23DEAD/DEAH box helicase n=1 Tax=Burkholderiales bac... [more]
A0A355UV81_9CYAN2.500e-9744.27Uncharacterized protein n=1 Tax=Cyanobacteria bact... [more]
A0A661JWI6_9DELT4.460e-2726.88Transcription-repair-coupling factor n=1 Tax=Delta... [more]
R6I9V4_9FIRM5.700e-2427.84Transcription-repair-coupling factor n=6 Tax=Phasc... [more]
A0A1G1WR00_9BACT6.740e-2427.05Uncharacterized protein n=1 Tax=Candidatus Woykeba... [more]
T0HFM8_9SPHN7.950e-2427.25ATP-dependent DNA helicase RecG n=3 Tax=Sphingobiu... [more]
A0A847GH51_9BACT1.030e-2327.98Transcription-repair-coupling factor n=1 Tax=Candi... [more]
A0A843RJI0_9PROT1.060e-2330.59Transcription-repair-coupling factor n=1 Tax=Kilon... [more]
UPI0018B005881.360e-2329.77DEAD/DEAH box helicase n=1 Tax=Microvirga sp. BT29... [more]
A0A7U6Y3F5_9PROT1.420e-2329.89Transcription-repair-coupling factor n=1 Tax=Rhodo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19555contigP-wetherbeei_contig19555:3..1154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1230341.MJ3_02682
Preferred namerecG
PFAMsDEAD,Helicase_C,RecG_wedge
Model size1152
Max annot lvl91061|Bacilli
KEGG koko:K03655
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006725,GO:0006807,GO:0008026,GO:0008150,GO:0008152,GO:0008186,GO:0009987,GO:0010501,GO:0016070,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0070035,GO:0071704,GO:0090304,GO:0140098,GO:1901360
Exons1
Evalue2.92e-30
EggNOG OGsCOG1200@1|root,COG1200@2|Bacteria,1TQ6I@1239|Firmicutes,4HAWN@91061|Bacilli
EC3.6.4.12
DescriptionCritical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
Cds size1152
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186175.9311821-CDS-P-wetherbeei_contig19555:2..11541683186175.9311821-CDS-P-wetherbeei_contig19555:2..1154Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19555 3..1154 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19555.1.1prot_P-wetherbeei_contig19555.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19555 3..1154 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19555.1.1

>prot_P-wetherbeei_contig19555.1.1 ID=prot_P-wetherbeei_contig19555.1.1|Name=mRNA_P-wetherbeei_contig19555.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=384bp
IEDNCQRVAEDNELVQDGARFTLTEHQTRAIAEVGERLQNGEVKLLLKAP
TGSGKTEVFFRSAVNQVLSSGKHVVIMVPTRDLARQQANYFEERLQGTDL
EIIQMHAGIPPRTRRNQLDDFGQGNVKVVVGSAMMLKGAAHRRLLDDAGL
LIVDDVNAFDEDEDLVNLRGLRCPILYVTATPEAVGKFLGREGVLTNPVL
ITQTPFDSPPTVLHEVRGEWNENIFKQMDRAMDMLKHHVEVGSRIYLISK
TRARVPIMAQYVLDRLGVPVSILHGEMADSIEHKKRQRKTKGGPVTASMG
GNVTEDRVSMMKQFRENSPAVLVATNLVGSGLDVPMADLVVVTDADHFGA
AEIEQLMGRVGRREKASDAVLIKGTAASAPRGQM
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mRNA from alignment at P-wetherbeei_contig19555:3..1154+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19555.1.1 ID=mRNA_P-wetherbeei_contig19555.1.1|Name=mRNA_P-wetherbeei_contig19555.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1152bp|location=Sequence derived from alignment at P-wetherbeei_contig19555:3..1154+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGAAGATAACTGCCAGAGGGTCGCGGAAGACAATGAGCTCGTCCAGGA CGGCGCTCGCTTCACGCTCACCGAACATCAAACGCGTGCCATTGCGGAGG TCGGCGAACGACTTCAAAACGGCGAAGTCAAGCTGCTCTTGAAAGCCCCT ACCGGCTCGGGCAAGACGGAAGTCTTCTTCCGCTCCGCCGTAAATCAAGT TCTCAGCTCCGGTAAGCACGTGGTGATCATGGTTCCCACGCGCGACCTGG CCCGTCAGCAGGCCAATTATTTCGAGGAGCGCCTCCAGGGCACGGACCTC GAAATCATTCAGATGCACGCCGGCATCCCGCCCAGAACGCGCCGCAACCA GCTCGACGATTTCGGCCAGGGCAACGTGAAGGTCGTCGTCGGTAGCGCAA TGATGCTCAAGGGTGCAGCCCATCGCCGTCTGCTCGACGACGCGGGACTC CTCATCGTTGACGACGTCAACGCTTTCGACGAGGACGAAGATCTTGTAAA TCTGCGCGGACTGCGCTGCCCCATCCTGTATGTGACCGCCACTCCCGAAG CGGTCGGCAAGTTCCTGGGCCGCGAAGGCGTCCTCACCAATCCGGTCCTC ATCACCCAGACCCCGTTCGATTCCCCGCCCACCGTGCTTCACGAAGTCCG CGGCGAATGGAACGAAAACATCTTCAAACAGATGGACCGCGCGATGGACA TGCTCAAGCATCACGTCGAAGTCGGCAGCCGTATCTACCTCATCAGCAAG ACGCGCGCCCGCGTTCCCATTATGGCTCAATACGTGCTTGATCGCCTCGG CGTTCCGGTCTCGATTCTGCACGGCGAAATGGCCGACTCCATCGAGCACA AGAAACGCCAGCGCAAAACCAAGGGCGGACCGGTCACGGCTTCCATGGGC GGCAACGTCACCGAGGACCGCGTCTCGATGATGAAGCAGTTCCGCGAGAA CAGCCCGGCCGTTCTGGTCGCGACCAATCTCGTGGGCTCCGGTCTCGACG TTCCGATGGCCGACCTCGTGGTCGTCACCGACGCCGATCACTTCGGCGCC GCCGAAATCGAGCAGCTGATGGGCCGCGTCGGCCGTCGCGAAAAAGCCTC CGACGCTGTCCTCATCAAAGGCACGGCGGCTTCGGCACCCCGCGGCCAGA TG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19555:3..1154+

>mRNA_P-wetherbeei_contig19555.1.1 ID=mRNA_P-wetherbeei_contig19555.1.1|Name=mRNA_P-wetherbeei_contig19555.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=1152bp|location=Sequence derived from alignment at P-wetherbeei_contig19555:3..1154+ (Phaeothamnion wetherbeei SAG_119_79)
ATCGAAGATAACTGCCAGAGGGTCGCGGAAGACAATGAGCTCGTCCAGGA
CGGCGCTCGCTTCACGCTCACCGAACATCAAACGCGTGCCATTGCGGAGG
TCGGCGAACGACTTCAAAACGGCGAAGTCAAGCTGCTCTTGAAAGCCCCT
ACCGGCTCGGGCAAGACGGAAGTCTTCTTCCGCTCCGCCGTAAATCAAGT
TCTCAGCTCCGGTAAGCACGTGGTGATCATGGTTCCCACGCGCGACCTGG
CCCGTCAGCAGGCCAATTATTTCGAGGAGCGCCTCCAGGGCACGGACCTC
GAAATCATTCAGATGCACGCCGGCATCCCGCCCAGAACGCGCCGCAACCA
GCTCGACGATTTCGGCCAGGGCAACGTGAAGGTCGTCGTCGGTAGCGCAA
TGATGCTCAAGGGTGCAGCCCATCGCCGTCTGCTCGACGACGCGGGACTC
CTCATCGTTGACGACGTCAACGCTTTCGACGAGGACGAAGATCTTGTAAA
TCTGCGCGGACTGCGCTGCCCCATCCTGTATGTGACCGCCACTCCCGAAG
CGGTCGGCAAGTTCCTGGGCCGCGAAGGCGTCCTCACCAATCCGGTCCTC
ATCACCCAGACCCCGTTCGATTCCCCGCCCACCGTGCTTCACGAAGTCCG
CGGCGAATGGAACGAAAACATCTTCAAACAGATGGACCGCGCGATGGACA
TGCTCAAGCATCACGTCGAAGTCGGCAGCCGTATCTACCTCATCAGCAAG
ACGCGCGCCCGCGTTCCCATTATGGCTCAATACGTGCTTGATCGCCTCGG
CGTTCCGGTCTCGATTCTGCACGGCGAAATGGCCGACTCCATCGAGCACA
AGAAACGCCAGCGCAAAACCAAGGGCGGACCGGTCACGGCTTCCATGGGC
GGCAACGTCACCGAGGACCGCGTCTCGATGATGAAGCAGTTCCGCGAGAA
CAGCCCGGCCGTTCTGGTCGCGACCAATCTCGTGGGCTCCGGTCTCGACG
TTCCGATGGCCGACCTCGTGGTCGTCACCGACGCCGATCACTTCGGCGCC
GCCGAAATCGAGCAGCTGATGGGCCGCGTCGGCCGTCGCGAAAAAGCCTC
CGACGCTGTCCTCATCAAAGGCACGGCGGCTTCGGCACCCCGCGGCCAGA
TG
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