mRNA_P-wetherbeei_contig19521.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19521.1.1
Unique NamemRNA_P-wetherbeei_contig19521.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19521.1.1 vs. uniprot
Match: A0A7C4XXA8_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C4XXA8_9HYPH)

HSP 1 Score: 99.0 bits (245), Expect = 1.600e-22
Identity = 59/147 (40.14%), Postives = 80/147 (54.42%), Query Frame = 1
Query:    1 GKPALEGGYPAFNMSHSQSKCLIAIGWPGPLGIDLELPRTVQLGPVRQALIVAAGLGLDSDALESARQPDCRPEVPFLRAWTRLEALAKARGDGIGHLLTTLGITASGVKELTAGEVGARADTLIASSGLQIADIALPDASIGAIAA 441
            GKP+L      F++SH+    LIA+   GP+G+DLE  RTV +   R++ I AA   +   A +    P        L AWTRLEA AKARG GIG LLT LG+   G + ++       A  L+A  G+ +AD+ LP    GA+AA
Sbjct:   80 GKPSLADTGIEFSVSHAGQNALIALSGNGPVGVDLECWRTVHIHEPRRSQIAAAAAAIARRAEDGRPTPGELDRAQLLSAWTRLEAWAKARGSGIGVLLTDLGLLGPGSRRVSPEAAAESARRLVALEGVAVADLCLPIGLFGAVAA 226          
BLAST of mRNA_P-wetherbeei_contig19521.1.1 vs. uniprot
Match: A0A7C2QX34_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobiales bacterium TaxID=1909294 RepID=A0A7C2QX34_9HYPH)

HSP 1 Score: 99.4 bits (246), Expect = 1.700e-22
Identity = 60/148 (40.54%), Postives = 87/148 (58.78%), Query Frame = 1
Query:    1 GKPALEGGYPAFNMSHSQSKCLIAIGWPGP--LGIDLELPRTVQLGPVRQALIVAAGLGLDSDALESARQPDCRPEVPFLRAWTRLEALAKARGDGIGHLLTTLGITASGVKELTAGEVGARADTLIASSGLQIADIALPDASIGAIA 438
            GKP L GG  AF++SH+    LIA+  PG   +G+D+E  R + +   R+   VA G+GL       A   D   + P L+AW RLEA AKARGDG+G +L+ LG+  +G +     ++ A A  L  S+GL+++D+ALP    GA+A
Sbjct:   97 GKPRLAGGAVAFSLSHAGGLALIALV-PGDRAVGVDVEARRPLAMSARRRTETVAVGVGL-----AGAPAGDPAEDAPVLQAWCRLEAFAKARGDGVGSVLSRLGLREAGARTRPPWQIEAAAQRLARSAGLRVSDVALPAGLFGAVA 238          
BLAST of mRNA_P-wetherbeei_contig19521.1.1 vs. uniprot
Match: UPI001AEDA127 (phosphopantetheinyl transferase n=1 Tax=Hyphomicrobium methylovorum TaxID=84 RepID=UPI001AEDA127)

HSP 1 Score: 93.2 bits (230), Expect = 2.490e-20
Identity = 61/154 (39.61%), Postives = 87/154 (56.49%), Query Frame = 1
Query:    1 GKPALEGGYPAFNMSHSQSKCLIAIGWPGPLGIDLELPRTVQLGPVRQALIVAAGLGLDS--DALESARQPDCRPEVPFLRAWTRLEALAKARGDGIGHLLTTLGITA--SGVKELTAGEVGARADTLIASSGLQIADIALPDASIGAIAAAGL 450
            G+P L  G P FN+SHS    LIA+   G +GID+E  RT+ +   R+  +V A   +D+  DAL+ A   D       LRAW RLEA+AKA G GIG +LT  G+ A  +GV+ +         D  +AS  L++ D+++P+  + AIAA  L
Sbjct:   94 GRPELPAGMPVFNVSHSGGVALIAVAQSGAVGIDIEGARTLSMSLERRQRLVTAAAAIDAACDALDPASDDD------VLRAWVRLEAVAKALGSGIGRMLTAHGVIAQSTGVRGM---------DDRVAS--LRVGDLSVPEGYVAAIAATAL 230          
BLAST of mRNA_P-wetherbeei_contig19521.1.1 vs. uniprot
Match: D8JWJ4_HYPDA (Phosphopantetheinyl transferase-like protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIMB 11706 / TK 0415) TaxID=582899 RepID=D8JWJ4_HYPDA)

HSP 1 Score: 86.7 bits (213), Expect = 5.700e-18
Identity = 48/104 (46.15%), Postives = 64/104 (61.54%), Query Frame = 1
Query:    1 GKPALEGGYPAFNMSHSQSKCLIAIGWPGPLGIDLELPRTVQLGPVRQALIVAAGLGLDSDALESARQPDCRPEVPFLRAWTRLEALAKARGDGIGHLLTTLGI 312
            G+P+L  G P FN+SH+ S  LIA+    P+G+D+E  RT+ +   R+  IVAA     +D L S    +   +V  LRAW RLEA+AKARG GIG LLT  G+
Sbjct:   81 GRPSLGDGLPHFNVSHTASVALIAVCQMSPVGVDVECQRTLSMSSERRRRIVAA-----ADDLASVGALNPESDVDVLRAWVRLEAIAKARGSGIGVLLTEEGV 179          
BLAST of mRNA_P-wetherbeei_contig19521.1.1 vs. uniprot
Match: A0A1Q3JQI7_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium 64-6 TaxID=1895710 RepID=A0A1Q3JQI7_9PROT)

HSP 1 Score: 84.7 bits (208), Expect = 9.720e-18
Identity = 51/108 (47.22%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    1 GKPALEGGYPAFNMSHSQSKCLIAIGWPGPLGIDLELPRTVQLGPVRQALIVAAGLGLDSDALESARQPDCRPEVPFLRAWTRLEALAKARGDGIGHLLTTLGITASG 324
            GKP + G    F++SHS    +IA+   G +GID+E+ R V+L   R+ LI  AG     +AL  A       EV FL AWTRLEA+ K RG GIG LL TLGI A G
Sbjct:   16 GKPRVSGWNGEFSLSHSAGLAVIAVRNQGRVGIDVEVRRPVRLSAERRHLIEIAGAAAHPEALLLADDA----EVRFLTAWTRLEAIGKMRGTGIGALLETLGIVARG 119          
BLAST of mRNA_P-wetherbeei_contig19521.1.1 vs. uniprot
Match: A0A1E4CSN4_9HYPH (Uncharacterized protein n=2 Tax=unclassified Hyphomicrobium TaxID=2619925 RepID=A0A1E4CSN4_9HYPH)

HSP 1 Score: 85.1 bits (209), Expect = 2.710e-17
Identity = 51/108 (47.22%), Postives = 63/108 (58.33%), Query Frame = 1
Query:    1 GKPALEGGYPAFNMSHSQSKCLIAIGWPGPLGIDLELPRTVQLGPVRQALIVAAGLGLDSDALESARQPDCRPEVPFLRAWTRLEALAKARGDGIGHLLTTLGITASG 324
            GKP + G    F++SHS    +IA+   G +GID+E+ R V+L   R+ LI  AG     +AL  A       EV FL AWTRLEA+ K RG GIG LL TLGI A G
Sbjct:   85 GKPRVSGWNGEFSLSHSAGLAVIAVRNQGRVGIDVEVRRPVRLSAERRHLIEIAGAAAHPEALLPADDA----EVGFLTAWTRLEAIGKMRGTGIGALLETLGIVARG 188          
BLAST of mRNA_P-wetherbeei_contig19521.1.1 vs. uniprot
Match: A0A218PQ23_9HYPH (Phosphopantetheinyl transferase-like protein n=1 Tax=Hyphomicrobium sp. GJ21 TaxID=113574 RepID=A0A218PQ23_9HYPH)

HSP 1 Score: 82.8 bits (203), Expect = 1.660e-16
Identity = 52/116 (44.83%), Postives = 68/116 (58.62%), Query Frame = 1
Query:    1 GKPALEGGYPAFNMSHSQSKCLIAIGWPGPLGIDLELPRTVQLGPVRQALIVAAGLGLDSDALESARQPDCRPEVPFLRAWTRLEALAKARGDGIGHLLTTLGITASGVKELTAGE 348
            G+P+L  G P FN+SH+    LIA+     +G+D+E PRT+ +   R+  IV A   L   A   A  P+   +V  LRAW RLEA+AKARG GIG LLT  G+   G  E +AGE
Sbjct:   81 GRPSLGYGLPHFNVSHAAGVALIAVCRSLSVGVDIECPRTLSMSSERRRRIVTAAADL---AAIGALNPES--DVDVLRAWVRLEAIAKARGSGIGVLLTEEGVI--GGAERSAGE 189          
BLAST of mRNA_P-wetherbeei_contig19521.1.1 vs. uniprot
Match: N0BBS9_9HYPH (Phosphopantetheinyl transferase-like protein n=2 Tax=Hyphomicrobium denitrificans TaxID=53399 RepID=N0BBS9_9HYPH)

HSP 1 Score: 81.3 bits (199), Expect = 8.260e-16
Identity = 57/150 (38.00%), Postives = 80/150 (53.33%), Query Frame = 1
Query:    1 GKPALEGGYPAFNMSHSQSKCLIAIGWPGPLGIDLELPRTVQLGPVRQALIVAAGLGLDSDALESARQPDCRPEVPFLRAWTRLEALAKARGDGIGHLLTTLGITASGVKELTAGEVGARADTLIASSGLQIADIALPDASIGAIAAAGL 450
            G+P+L  G+P FN+SH+    LIA+     +G+D+E  R + + P R+  IVAA      D       PD   +V  L AW RLEA+AKARG GIG LLT  G+  S      AGE   ++    A S   + D+ +  + +GA+AA  L
Sbjct:   94 GRPSLSEGFPHFNVSHTADVALIAVCRSSLVGVDIESHRALSISPERRRRIVAAAARFTGDEAN----PD--NDVDVLVAWVRLEAVAKARGAGIGVLLTEQGVIGS------AGEKREKS----AKSSPAVTDLDVGTSYVGAVAADAL 227          
BLAST of mRNA_P-wetherbeei_contig19521.1.1 vs. uniprot
Match: V5SK06_9HYPH (Uncharacterized protein n=1 Tax=Hyphomicrobium nitrativorans NL23 TaxID=1029756 RepID=V5SK06_9HYPH)

HSP 1 Score: 77.0 bits (188), Expect = 2.830e-14
Identity = 42/102 (41.18%), Postives = 61/102 (59.80%), Query Frame = 1
Query:    1 GKPALEGGYPAFNMSHSQSKCLIAIGWPGPLGIDLELPRTVQLGPVRQALIVAAGLGLDSDALESARQPDCRPEVPFLRAWTRLEALAKARGDGIGHLLTTL 306
            GKPAL     +F+++H+ +  LIA+   GP+G+DLE  R V++   R+A I  A + L +    +   PD R    FLRAW R+EA+AKA G G+G +L  L
Sbjct:   78 GKPALACASVSFSLAHTAASALIALSDVGPVGVDLEHARKVKIPAARRAPIERAAVALAAGVPLAEGDPDTR----FLRAWVRIEAVAKATGSGVGPILERL 175          
BLAST of mRNA_P-wetherbeei_contig19521.1.1 vs. uniprot
Match: UPI0012EC5481 (hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii TaxID=48292 RepID=UPI0012EC5481)

HSP 1 Score: 73.9 bits (180), Expect = 4.290e-13
Identity = 43/102 (42.16%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    1 GKPALEGGYPAFNMSHSQSKCLIAIGWPGPLGIDLELPRTVQLGPVRQALIVAAGLGLDSDALESARQPDCRPEVPFLRAWTRLEALAKARGDGIGHLLTTL 306
            GKPAL     +F+++H++   LI  G   PLG+DLEL R V +   R+A I    + L + A       D R    FLRAW R+EA+AKA G+G+G LL  L
Sbjct:   78 GKPALANDGVSFSLAHTKGLALIGTGPGMPLGVDLELMRAVHMPETRRAPIEREAVALAAGAPLGDADADAR----FLRAWVRIEAVAKALGEGVGPLLEHL 175          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19521.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7C4XXA8_9HYPH1.600e-2240.14Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
A0A7C2QX34_9HYPH1.700e-2240.54Uncharacterized protein n=1 Tax=Hyphomicrobiales b... [more]
UPI001AEDA1272.490e-2039.61phosphopantetheinyl transferase n=1 Tax=Hyphomicro... [more]
D8JWJ4_HYPDA5.700e-1846.15Phosphopantetheinyl transferase-like protein n=1 T... [more]
A0A1Q3JQI7_9PROT9.720e-1847.22Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
A0A1E4CSN4_9HYPH2.710e-1747.22Uncharacterized protein n=2 Tax=unclassified Hypho... [more]
A0A218PQ23_9HYPH1.660e-1644.83Phosphopantetheinyl transferase-like protein n=1 T... [more]
N0BBS9_9HYPH8.260e-1638.00Phosphopantetheinyl transferase-like protein n=2 T... [more]
V5SK06_9HYPH2.830e-1441.18Uncharacterized protein n=1 Tax=Hyphomicrobium nit... [more]
UPI0012EC54814.290e-1342.16hypothetical protein n=1 Tax=Hyphomicrobium zavarz... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19521contigP-wetherbeei_contig19521:1..450 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog582899.Hden_1295
Preferred namesfp
PFAMsACPS
Model size450
Max annot lvl2|Bacteria
KEGG rclassRC00002
KEGG koko:K00997,ko:K06133
KEGG ReactionR01625
KEGG Pathwayko00770,map00770
Hectar predicted targeting categoryother localisation
Exons1
Evalue9.35e-19
EggNOG OGsCOG2091@1|root,COG2091@2|Bacteria
EC2.7.8.7
Descriptionlysine biosynthetic process via aminoadipic acid
Cds size450
COG categoryH
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186175.0704796-CDS-P-wetherbeei_contig19521:0..4501683186175.0704796-CDS-P-wetherbeei_contig19521:0..450Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19521 1..450 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19521.1.1prot_P-wetherbeei_contig19521.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19521 1..450 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19521.1.1

>prot_P-wetherbeei_contig19521.1.1 ID=prot_P-wetherbeei_contig19521.1.1|Name=mRNA_P-wetherbeei_contig19521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=150bp
GKPALEGGYPAFNMSHSQSKCLIAIGWPGPLGIDLELPRTVQLGPVRQAL
IVAAGLGLDSDALESARQPDCRPEVPFLRAWTRLEALAKARGDGIGHLLT
TLGITASGVKELTAGEVGARADTLIASSGLQIADIALPDASIGAIAAAGL
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mRNA from alignment at P-wetherbeei_contig19521:1..450+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19521.1.1 ID=mRNA_P-wetherbeei_contig19521.1.1|Name=mRNA_P-wetherbeei_contig19521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig19521:1..450+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGCCGGCCCTCGAAGGCGGATATCCCGCGTTCAATATGTCCCATAG CCAATCCAAGTGTCTGATCGCAATTGGCTGGCCGGGACCATTGGGAATCG ATCTGGAGCTGCCGCGAACCGTGCAACTCGGTCCGGTTCGCCAAGCCCTG ATCGTAGCGGCGGGACTGGGGCTGGATTCCGATGCGCTCGAAAGCGCAAG ACAACCCGATTGCCGCCCTGAAGTTCCGTTTCTTCGCGCGTGGACGCGCC TGGAGGCCCTCGCCAAGGCCCGCGGCGACGGCATTGGCCACCTTTTGACG ACGCTCGGGATCACCGCCAGCGGGGTCAAGGAATTGACAGCCGGAGAGGT TGGAGCGCGGGCGGATACCCTGATTGCGAGCAGCGGCCTCCAGATTGCCG ATATCGCCCTGCCGGACGCCAGCATCGGCGCAATAGCAGCCGCAGGACTC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19521:1..450+

>mRNA_P-wetherbeei_contig19521.1.1 ID=mRNA_P-wetherbeei_contig19521.1.1|Name=mRNA_P-wetherbeei_contig19521.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=450bp|location=Sequence derived from alignment at P-wetherbeei_contig19521:1..450+ (Phaeothamnion wetherbeei SAG_119_79)
GGCAAGCCGGCCCTCGAAGGCGGATATCCCGCGTTCAATATGTCCCATAG
CCAATCCAAGTGTCTGATCGCAATTGGCTGGCCGGGACCATTGGGAATCG
ATCTGGAGCTGCCGCGAACCGTGCAACTCGGTCCGGTTCGCCAAGCCCTG
ATCGTAGCGGCGGGACTGGGGCTGGATTCCGATGCGCTCGAAAGCGCAAG
ACAACCCGATTGCCGCCCTGAAGTTCCGTTTCTTCGCGCGTGGACGCGCC
TGGAGGCCCTCGCCAAGGCCCGCGGCGACGGCATTGGCCACCTTTTGACG
ACGCTCGGGATCACCGCCAGCGGGGTCAAGGAATTGACAGCCGGAGAGGT
TGGAGCGCGGGCGGATACCCTGATTGCGAGCAGCGGCCTCCAGATTGCCG
ATATCGCCCTGCCGGACGCCAGCATCGGCGCAATAGCAGCCGCAGGACTC
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