mRNA_P-wetherbeei_contig19511.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19511.1.1
Unique NamemRNA_P-wetherbeei_contig19511.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19511.1.1 vs. uniprot
Match: A0A7X8XJ65_9BURK (Ribosomal-processing cysteine protease Prp n=1 Tax=Burkholderiales bacterium TaxID=1891238 RepID=A0A7X8XJ65_9BURK)

HSP 1 Score: 70.5 bits (171), Expect = 1.600e-13
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 1
Query:    1 MIDIRLKRD-KGRVVALECSGHAGFDDGNGLDLVCAAVSALTGALGMGLAEKASPPLQVAVGDGRFKVDLRKQPASEEA---YFLLGVIASSLEMLTRNYPGFVQLK 309
            MI + ++RD +GR+  L CSGHA FD   G+D+VCA VSAL GAL +GL +    P+ ++ GD R  V +  +   E A     LL     +L+ +  NY G ++++
Sbjct:    1 MIQVGVRRDLRGRIRHLSCSGHARFDPEGGVDVVCAGVSALMGALAIGLTQVVGAPVSLSAGDARLLVRVPARMPEELAGPVQVLLETTVLALQEIQENYQGSLKIR 107          
BLAST of mRNA_P-wetherbeei_contig19511.1.1 vs. uniprot
Match: W6RW96_9CLOT (Uncharacterized protein n=2 Tax=Clostridium bornimense TaxID=1216932 RepID=W6RW96_9CLOT)

HSP 1 Score: 50.1 bits (118), Expect = 1.280e-5
Identity = 33/104 (31.73%), Postives = 53/104 (50.96%), Query Frame = 1
Query:    1 MIDIRLKRDKGRVVALECSGHAGFDDGNGLDLVCAAVSALTGALGMGLAEKASPPLQVAVGDGRFKVDLRK--QPASEEAYFLLGVIASSLEMLTRNYPGFVQL 306
            MI I  ++   ++++   SGHAGFD+ +G D+VC+AVS L+GA+  G+ E           DG   + L        E+   L+  +  SL+ L  NY  +V +
Sbjct:    1 MIKIDFQKHCDKLISFNISGHAGFDE-SGRDIVCSAVSVLSGAVINGVTEILKIDAPYDFSDGHMSISLSSLSDEEIEKCQVLMETMLVSLKSLEVNYKDYVNV 103          
BLAST of mRNA_P-wetherbeei_contig19511.1.1 vs. uniprot
Match: UPI001C029225 (ribosomal-processing cysteine protease Prp n=1 Tax=Coprococcus catus TaxID=116085 RepID=UPI001C029225)

HSP 1 Score: 48.1 bits (113), Expect = 5.430e-5
Identity = 31/102 (30.39%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    1 MIDIRLKRDKGRVVALECSGHAGFDDGNGLDLVCAAVSALTGALGMGLAEKASPPLQVAVGDGRFKVDLRKQPASEEAYFLLGVIASSLEMLTRNYPGFVQL 306
            MIDI +++D+     L  SGHAG+   +G D++CAAV+AL+G L   + +     ++  V  G   VD++ +  SE+A  L+      + ++   +PG++++
Sbjct:    1 MIDITVRKDR-----LTVSGHAGYA-ASGEDIICAAVTALSGTLVKSIEDLTDDKIEYDVQPGW--VDIKYRDLSEKAKALVDSFFIGICLVADEFPGYIRI 94          
BLAST of mRNA_P-wetherbeei_contig19511.1.1 vs. uniprot
Match: A0A851I1R1_9FUSO (Ribosomal-processing cysteine protease Prp n=1 Tax=Leptotrichia sp. oral taxon 223 TaxID=712363 RepID=A0A851I1R1_9FUSO)

HSP 1 Score: 48.5 bits (114), Expect = 6.110e-5
Identity = 35/110 (31.82%), Postives = 59/110 (53.64%), Query Frame = 1
Query:    1 MIDIRLKRDKGRVVALECSGHAGFDDGNGLDLVCAAVSALTGALGMGLAE--KASPPLQVAVGDGRFKVDLRKQPAS----EEAYFLLGVIASSLEMLTRNYPGFVQLKD 312
            MI+I+++R K +++  E  GHA F +  G D++CAAVS+       GL E  +    L+    DG    DL+    +    E+A  L+  + S L+ + ++Y  FV+LK+
Sbjct:    1 MINIKIQRQKDKIIYFEIEGHADFSE-YGEDVICAAVSSAGQITVNGLIETLELKKKLKFTEEDGYIVCDLKNSGLTDDELEKADILVESMYSYLKEVAKSYSDFVKLKE 109          
BLAST of mRNA_P-wetherbeei_contig19511.1.1 vs. uniprot
Match: A0A6I4VYM2_9BACL (Ribosomal-processing cysteine protease Prp n=3 Tax=Shimazuella TaxID=471798 RepID=A0A6I4VYM2_9BACL)

HSP 1 Score: 48.1 bits (113), Expect = 7.370e-5
Identity = 40/115 (34.78%), Postives = 64/115 (55.65%), Query Frame = 1
Query:    1 MIDIRLKRDKGRVVA-LECSGHAGFDDGNGLDLVCAAVSALTGALGMGLAEKASPPLQVAV---GDGRFKVDLRKQPA---SEEAYFLLGVIASSLEMLTRN----YPGFVQLKD 312
            MI IR+KR++  +V  ++ +GHA F + +G+D+VCAAVSA+T    +G+         V +    DG  KVD R  PA   +EE    LG++  ++++  +     YP +VQ K 
Sbjct:    1 MIRIRVKRNQAELVEQIKVTGHANFAE-HGMDIVCAAVSAVT----IGMVNAMEQITGVTIHQPDDGEGKVDCRV-PADLPTEEVRTQLGLLMRAMDLSLKGIADAYPDYVQYKQ 109          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19511.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A7X8XJ65_9BURK1.600e-1338.32Ribosomal-processing cysteine protease Prp n=1 Tax... [more]
W6RW96_9CLOT1.280e-531.73Uncharacterized protein n=2 Tax=Clostridium bornim... [more]
UPI001C0292255.430e-530.39ribosomal-processing cysteine protease Prp n=1 Tax... [more]
A0A851I1R1_9FUSO6.110e-531.82Ribosomal-processing cysteine protease Prp n=1 Tax... [more]
A0A6I4VYM2_9BACL7.370e-534.78Ribosomal-processing cysteine protease Prp n=3 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19511contigP-wetherbeei_contig19511:145..462 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog879309.HMPREF9199_1259
PFAMsPeptidase_Prp
Model size318
Max annot lvl909932|Negativicutes
KEGG koko:K07584
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.13e-11
EggNOG OGsCOG2868@1|root,COG2868@2|Bacteria,1TU8A@1239|Firmicutes,4H5SB@909932|Negativicutes
DescriptionCysteine protease Prp
Cds size318
COG categoryJ
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186174.924469-CDS-P-wetherbeei_contig19511:144..4621683186174.924469-CDS-P-wetherbeei_contig19511:144..462Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19511 145..462 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19511.1.1prot_P-wetherbeei_contig19511.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19511 145..462 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19511.1.1

>prot_P-wetherbeei_contig19511.1.1 ID=prot_P-wetherbeei_contig19511.1.1|Name=mRNA_P-wetherbeei_contig19511.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=106bp
MIDIRLKRDKGRVVALECSGHAGFDDGNGLDLVCAAVSALTGALGMGLAE
KASPPLQVAVGDGRFKVDLRKQPASEEAYFLLGVIASSLEMLTRNYPGFV
QLKDR*
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mRNA from alignment at P-wetherbeei_contig19511:145..462+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19511.1.1 ID=mRNA_P-wetherbeei_contig19511.1.1|Name=mRNA_P-wetherbeei_contig19511.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig19511:145..462+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGACATTCGTCTGAAGCGAGATAAAGGCCGCGTGGTGGCCCTGGA GTGTTCCGGGCACGCTGGCTTTGACGACGGAAACGGGCTCGACCTTGTGT GTGCTGCCGTTTCCGCTCTGACGGGTGCGTTAGGGATGGGGCTGGCGGAA AAGGCCTCTCCTCCTCTCCAAGTGGCGGTGGGGGATGGGCGCTTCAAGGT GGACCTTCGCAAACAGCCGGCCTCCGAGGAAGCCTATTTTCTCCTGGGCG TCATCGCTTCCAGTTTAGAGATGCTGACCCGCAACTATCCCGGCTTTGTG CAACTGAAGGACCGCTAG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19511:145..462+

>mRNA_P-wetherbeei_contig19511.1.1 ID=mRNA_P-wetherbeei_contig19511.1.1|Name=mRNA_P-wetherbeei_contig19511.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=318bp|location=Sequence derived from alignment at P-wetherbeei_contig19511:145..462+ (Phaeothamnion wetherbeei SAG_119_79)
ATGATCGACATTCGTCTGAAGCGAGATAAAGGCCGCGTGGTGGCCCTGGA
GTGTTCCGGGCACGCTGGCTTTGACGACGGAAACGGGCTCGACCTTGTGT
GTGCTGCCGTTTCCGCTCTGACGGGTGCGTTAGGGATGGGGCTGGCGGAA
AAGGCCTCTCCTCCTCTCCAAGTGGCGGTGGGGGATGGGCGCTTCAAGGT
GGACCTTCGCAAACAGCCGGCCTCCGAGGAAGCCTATTTTCTCCTGGGCG
TCATCGCTTCCAGTTTAGAGATGCTGACCCGCAACTATCCCGGCTTTGTG
CAACTGAAGGACCGCTAG
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