mRNA_P-wetherbeei_contig1951.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1951.2.1
Unique NamemRNA_P-wetherbeei_contig1951.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
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BLAST of mRNA_P-wetherbeei_contig1951.2.1 vs. uniprot
Match: A0A835YWB7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWB7_9STRA)

HSP 1 Score: 160 bits (406), Expect = 6.120e-37
Identity = 95/225 (42.22%), Postives = 123/225 (54.67%), Query Frame = 1 
Query: 1585 LEQRIRRAVARQGGFGTLLGSERSLLQLETGSGXXXXXXXXXEDDRLGFTVIGLSEIAFDYSLPRQRWVHLAVVAGAGATXXXXXXXDGCMVLDVFEDGRPVARAALTGALTPSLPQRDVGGRVDAAHCLLQELRVWRGQRSKRELRHGMRELLKPEAVGDGLAAYYTLEEGRGRLVRDATDQRYRARLHGARLQWLSSQAAAAGCEPPTPSWRERYICPVELRR 2259
            L  RI++A+      GTL GSE +LL L+ G           E  R+G   IG  E   +++ PR+RWVHLAV A   A             L++F+DGR V R  L  +  P+LP    GG    A CLLQE+R W  QR  +EL H M +LL   A  DGL  Y+T EEG G    D T QR RA + GA + W +S+A   G +PPTPSW+ER++C VE+RR
Sbjct:  812 LNARIKQALHCTSCQGTLAGSEGTLLGLQVG-----------EQGRVGVVTIGRREFVLNHACPRERWVHLAVTASETA-------------LELFQDGRSVDRLPLDASDVPALPMGHFGGTRGTAACLLQEIRYWAVQRGPKELEHSMHQLLPDNATHDGLLGYWTFEEGEGVYTFDVTAQRPRAVMAGAAVAWAASEAQERG-DPPTPSWQERHVCAVEMRR 1011
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BLAST of mRNA_P-wetherbeei_contig1951.2.1 vs. uniprot
Match: A0A1V9Z949_9STRA (TRAF-type domain-containing protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z949_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.410e-11
Identity = 58/170 (34.12%), Postives = 83/170 (48.82%), Query Frame = 1 
Query: 1750 EIAFDYSLPRQRWVHLAVVAGAGATXXXXXXXDGCMVLDVFEDGRPVARAALTGALTPSLPQRDVGGRVDAAHCLLQELRVWRGQRSKRELRHGMRELLKPEAVGDGLAAYYTLEEGRGRLVRDATDQRYRARLHGARLQWLSSQAAAAGCEPPTPSWRERYICPVELRR 2259
            ++ F   +PR+RWVH+A  A A +             + V  DG PV      G     LP   VG +  +    LQE+R W   R+  E++  MR+ L    +   L AY+TLEEG G  V D + +  RA LH A     ++       +PPTPS+R+R++CPV  RR
Sbjct:  653 KVRFKADVPRERWVHVAFNATAES-------------VQVLIDGLPVDERP--GEF--HLPMELVGAKEKSFRGHLQEVRYWSVNRTTAEIQAAMRDTL---TLTPPLRAYWTLEEGMGAFVDDVSGRVPRAPLHHATWSHYTAANLQRLGDPPTPSYRQRHMCPVVTRR 802
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BLAST of mRNA_P-wetherbeei_contig1951.2.1 vs. uniprot
Match: T0QHI1_SAPDV (TRAF-type domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QHI1_SAPDV)

HSP 1 Score: 73.9 bits (180), Expect = 8.610e-10
Identity = 57/167 (34.13%), Postives = 76/167 (45.51%), Query Frame = 1 
Query: 1759 FDYSLPRQRWVHLAVVAGAGATXXXXXXXDGCMVLDVFEDGRPVARAALTGALTPSLPQRDVGGRVDAAHCLLQELRVWRGQRSKRELRHGMRELLKPEAVGDGLAAYYTLEEGRGRLVRDATDQRYRARLHGARLQWLSSQAAAAGCEPPTPSWRERYICPVELRR 2259
            F   LPR+RWVH+A+ A A +        DG +V     D RP          T  LP   +G    A    LQE+R W   R+  EL   MR  L   A+   L AY+TLEEG G  V D +    R  +        +        +PPTPS+R+R++C V +RR
Sbjct:  635 FKAELPRERWVHMALNASATSVQLVL---DGAVV-----DERPG---------TFHLPMETLGASEKAFRGHLQEVRYWSTTRTPSELLASMRTTL---ALAPTLLAYWTLEEGMGPFVEDVSGHLPRVPIFNTSWSHYTMATLQRLGDPPTPSFRQRHMCAVVVRR 781
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BLAST of mRNA_P-wetherbeei_contig1951.2.1 vs. uniprot
Match: A0A067CRD2_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CRD2_SAPPC)

HSP 1 Score: 62.4 bits (150), Expect = 3.150e-6
Identity = 50/167 (29.94%), Postives = 73/167 (43.71%), Query Frame = 1 
Query: 1759 FDYSLPRQRWVHLAVVAGAGATXXXXXXXDGCMVLDVFEDGRPVARAALTGALTPSLPQRDVGGRVDAAHCLLQELRVWRGQRSKRELRHGMRELLKPEAVGDGLAAYYTLEEGRGRLVRDATDQRYRARLHGARLQWLSSQAAAAGCEPPTPSWRERYICPVELRR 2259
            F   LPR+RWVH+A+ A A +        DG +V     D RP          T  LP   +G    +    LQE+R W   R+  E+   +   L    +   L  Y+TLEEG G  + D +    R           ++       +PPTPS+R+R++C V +RR
Sbjct:  639 FKAELPRERWVHMALNASATSVQLVL---DGSVV-----DERPG---------TFHLPMETLGATEKSFRGHLQEVRYWTTTRTPSEISASIGTTLN---LVPTLQGYWTLEEGMGPFIEDVSGHLPRGPAFNTYWSHYTTATLQRLGDPPTPSFRQRHMCAVVVRR 785
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1951.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YWB7_9STRA6.120e-3742.22Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1V9Z949_9STRA1.410e-1134.12TRAF-type domain-containing protein n=1 Tax=Achlya... [more]
T0QHI1_SAPDV8.610e-1034.13TRAF-type domain-containing protein n=1 Tax=Saprol... [more]
A0A067CRD2_SAPPC3.150e-629.94Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1951contigP-wetherbeei_contig1951:3807..6396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G1R9
PFAMsLaminin_G_3,zf-TRAF
Model size2262
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.49e-51
EggNOG OGs2AISC@1|root,2RZ5E@2759|Eukaryota
Ec32 ortholog descriptionTRAF-like
Ec32 orthologEc-14_003730.1
DescriptionTRAF-type zinc finger
Cds size2259
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186174.880693-CDS-P-wetherbeei_contig1951:3808..39321683186174.880693-CDS-P-wetherbeei_contig1951:3808..3932Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1951 3809..3932 -
1683186174.8911247-CDS-P-wetherbeei_contig1951:4261..63961683186174.8911247-CDS-P-wetherbeei_contig1951:4261..6396Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1951 4262..6396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1951.2.1prot_P-wetherbeei_contig1951.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1951 3809..6396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1951.2.1

>prot_P-wetherbeei_contig1951.2.1 ID=prot_P-wetherbeei_contig1951.2.1|Name=mRNA_P-wetherbeei_contig1951.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=753bp
AHERVGDLLVPRPCLGFGGGEAYVDIGAADIEPPWTVEAWLWRPALAETA
REKVRAALTYRLRYREAADALREAESRVALLKPQLQQANEAETERLKVAR
QAATRRAVLAAAKNGAEDNGNGGAGGAAGGKDDSLIGPASSVARDGTGDG
AAAGAGAATAASGGAKKSQHTAMDRVTDALIAAATARDDAKVAMAVAAVR
LEAAAAAALREVRQLWDLVLSGGAPELERLALCTTPWYAEEERQEEGEEE
ENGEGEAVATVDDYAAANAGGNGGAASNQQGSAGGFPVAEESTAAAAEKA
AAGTAGKEEGAATGGRATSRGKAPKAKTSGRTTEASAEEGRIASGDESGS
AATPKKPSLMNVVAAEAATAEKSATAAATAFWTEWESLTGAELAVRFDNM
AAETVPRLLREVSECVGVTLGTGAVSGLAYRALSSGTSLLSPLAGTAGGA
DADSAAATSAATGDATGVEAPEASGTDPAGSSAAATTAAPAAVTETAAPA
PVTPKHVSRKAARKALRQVERARAFGEPLEQRIRRAVARQGGFGTLLGSE
RSLLQLETGSGGGDGGGGGGEDDRLGFTVIGLSEIAFDYSLPRQRWVHLA
VVAGAGATAGNGGGGDGCMVLDVFEDGRPVARAALTGALTPSLPQRDVGG
RVDAAHCLLQELRVWRGQRSKRELRHGMRELLKPEAVGDGLAAYYTLEEG
RGRLVRDATDQRYRARLHGARLQWLSSQAAAAGCEPPTPSWRERYICPVE
LRR
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mRNA from alignment at P-wetherbeei_contig1951:3807..6396-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1951.2.1 ID=mRNA_P-wetherbeei_contig1951.2.1|Name=mRNA_P-wetherbeei_contig1951.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=2590bp|location=Sequence derived from alignment at P-wetherbeei_contig1951:3807..6396- (Phaeothamnion wetherbeei SAG_119_79)
GCGCACGAGCGGGTCGGCGATCTGCTGGTGCCGCGGCCCTGCCTCGGGTT
TGGCGGTGGCGAGGCGTACGTGGACATCGGCGCCGCCGACATAGAGCCGC
CGTGGACGGTCGAGGCGTGGTTGTGGCGGCCGGCGCTGGCCGAGACCGCC
CGGGAGAAGGTGCGGGCGGCGCTGACGTACCGCCTCAGGTACCGAGAGGC
GGCGGACGCGCTGCGGGAGGCAGAAAGTCGCGTCGCGCTGTTAAAGCCGC
AGCTGCAGCAGGCGAACGAGGCCGAGACGGAACGATTAAAGGTGGCGCGG
CAGGCGGCAACGCGCCGGGCGGTGCTGGCGGCCGCCAAAAACGGAGCCGA
AGATAATGGCAATGGCGGTGCTGGCGGCGCTGCGGGCGGCAAAGACGACA
GCTTGATTGGCCCAGCTTCCTCGGTTGCCCGCGATGGCACCGGTGACGGC
GCTGCCGCTGGAGCGGGTGCCGCTACTGCAGCCAGTGGAGGAGCCAAGAA
GAGCCAGCACACGGCGATGGACCGCGTGACGGACGCGCTCATCGCGGCGG
CGACGGCCCGCGACGACGCCAAGGTTGCCATGGCGGTGGCGGCGGTGCGG
CTTGAAGCGGCGGCGGCGGCGGCGCTCCGCGAAGTCCGCCAGCTTTGGGA
CCTCGTTCTGAGCGGCGGGGCGCCGGAGCTGGAACGGTTGGCGCTGTGCA
CGACACCGTGGTACGCGGAGGAAGAAAGGCAGGAGGAGGGAGAGGAGGAG
GAAAACGGCGAGGGCGAGGCAGTTGCTACGGTGGACGACTACGCGGCGGC
AAATGCTGGCGGGAATGGCGGCGCAGCCTCAAACCAGCAGGGCAGTGCGG
GTGGTTTTCCCGTTGCTGAGGAGAGCACTGCGGCGGCGGCGGAAAAGGCT
GCCGCCGGCACTGCCGGCAAGGAAGAAGGAGCAGCAACAGGAGGAAGAGC
CACCAGCAGGGGAAAGGCTCCCAAGGCGAAGACTTCTGGCAGAACGACAG
AAGCTTCTGCAGAGGAGGGCAGAATTGCCAGCGGTGACGAAAGTGGCAGT
GCTGCAACGCCCAAAAAACCCAGCCTGATGAACGTCGTCGCCGCCGAGGC
TGCCACCGCAGAAAAGTCGGCAACGGCGGCCGCAACTGCATTCTGGACGG
AGTGGGAGTCGCTGACGGGCGCCGAGCTGGCAGTTCGTTTCGACAACATG
GCGGCCGAAACGGTGCCGCGTCTGCTTCGGGAAGTGAGCGAGTGCGTCGG
CGTGACGTTGGGCACGGGTGCTGTTTCGGGATTAGCCTACCGTGCACTGT
CATCAGGAACATCTCTGCTCTCTCCATTGGCTGGAACTGCTGGCGGCGCC
GACGCCGACTCTGCCGCTGCGACAAGCGCCGCAACAGGAGACGCCACGGG
CGTGGAGGCTCCCGAAGCTTCTGGAACGGATCCAGCAGGTTCATCAGCGG
CAGCGACGACGGCAGCGCCGGCGGCGGTAACTGAAACGGCGGCGCCGGCG
CCGGTGACGCCGAAGCACGTCTCGCGCAAGGCGGCACGCAAGGCGCTGCG
GCAGGTGGAGCGCGCCAGGGCTTTCGGCGAGCCGCTGGAGCAGCGCATCC
GCCGCGCCGTCGCCAGGCAGGGCGGCTTCGGGACGCTTCTGGGCTCGGAG
CGGTCGCTCCTACAGCTCGAAACCGGCAGTGGCGGCGGCGACGGCGGCGG
CGGCGGCGGCGAGGACGACCGGTTGGGCTTTACAGTGATCGGCCTCAGCG
AGATCGCATTTGATTACAGCCTGCCGCGGCAGCGCTGGGTTCATCTCGCC
GTCGTCGCCGGCGCCGGCGCGACAGCGGGCAACGGCGGCGGCGGCGACGG
GTGCATGGTGCTGGACGTGTTCGAGGACGGGCGGCCTGTGGCGCGCGCCG
CCCTCACGGGTGCACTGACGCCATCGCTGCCGCAGCGCGACGTCGGCGGG
CGCGTCGACGCGGCGCACTGCCTGCTGCAGGAGCTGCGGGTGTGGCGGGG
CCAGCGGAGCAAACGGGAGCTGCGGCACGGCATGCGGGAGCTCTTGAAGC
CCGAGGCGGTCGGCGATGGGCTGGCGGCGTACTACACGCTGGAGGAAGGC
CGCGGCCGCCTCGTTCGGGACGCCACGGATCAGAGGTGAGCGGAGCGGAG
GGTGGAGGGGGGCAAGCTAAGCATGGTTGTACATTTTCAGCAGCGGCCAG
AGAGGTGGGGACTTTTGCATGTTTCACAGCCATATTCGTTTTCAGGGCAG
CAGCGGCGAGGGACAATTGTCACGGTGGTGACGAAGCGGCTGCGACTTCA
ATTGGATGACGGTCTGAGCGCACTGACTCTACTTTTCCTGCCAACAGCTG
GCCATCCGTCTCATGGCTGATCCTTTGCTCTCTCTCACCTCCCCTTCTTT
TCTTCTGAAATGGTACCAACCCAATGAACGTTTTTCATAATGTCGCGCGC
CTTTTCCGCCGCAGGTACCGGGCGCGCCTGCACGGCGCGCGCCTGCAGTG
GCTGTCCAGCCAGGCGGCCGCCGCAGGCTGCGAGCCCCCGACGCCGTCGT
GGCGCGAGCGTTACATCTGCCCCGTCGAGCTCCGCCGCGC
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Coding sequence (CDS) from alignment at P-wetherbeei_contig1951:3807..6396-

>mRNA_P-wetherbeei_contig1951.2.1 ID=mRNA_P-wetherbeei_contig1951.2.1|Name=mRNA_P-wetherbeei_contig1951.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=2259bp|location=Sequence derived from alignment at P-wetherbeei_contig1951:3807..6396- (Phaeothamnion wetherbeei SAG_119_79)
GCGCACGAGCGGGTCGGCGATCTGCTGGTGCCGCGGCCCTGCCTCGGGTT
TGGCGGTGGCGAGGCGTACGTGGACATCGGCGCCGCCGACATAGAGCCGC
CGTGGACGGTCGAGGCGTGGTTGTGGCGGCCGGCGCTGGCCGAGACCGCC
CGGGAGAAGGTGCGGGCGGCGCTGACGTACCGCCTCAGGTACCGAGAGGC
GGCGGACGCGCTGCGGGAGGCAGAAAGTCGCGTCGCGCTGTTAAAGCCGC
AGCTGCAGCAGGCGAACGAGGCCGAGACGGAACGATTAAAGGTGGCGCGG
CAGGCGGCAACGCGCCGGGCGGTGCTGGCGGCCGCCAAAAACGGAGCCGA
AGATAATGGCAATGGCGGTGCTGGCGGCGCTGCGGGCGGCAAAGACGACA
GCTTGATTGGCCCAGCTTCCTCGGTTGCCCGCGATGGCACCGGTGACGGC
GCTGCCGCTGGAGCGGGTGCCGCTACTGCAGCCAGTGGAGGAGCCAAGAA
GAGCCAGCACACGGCGATGGACCGCGTGACGGACGCGCTCATCGCGGCGG
CGACGGCCCGCGACGACGCCAAGGTTGCCATGGCGGTGGCGGCGGTGCGG
CTTGAAGCGGCGGCGGCGGCGGCGCTCCGCGAAGTCCGCCAGCTTTGGGA
CCTCGTTCTGAGCGGCGGGGCGCCGGAGCTGGAACGGTTGGCGCTGTGCA
CGACACCGTGGTACGCGGAGGAAGAAAGGCAGGAGGAGGGAGAGGAGGAG
GAAAACGGCGAGGGCGAGGCAGTTGCTACGGTGGACGACTACGCGGCGGC
AAATGCTGGCGGGAATGGCGGCGCAGCCTCAAACCAGCAGGGCAGTGCGG
GTGGTTTTCCCGTTGCTGAGGAGAGCACTGCGGCGGCGGCGGAAAAGGCT
GCCGCCGGCACTGCCGGCAAGGAAGAAGGAGCAGCAACAGGAGGAAGAGC
CACCAGCAGGGGAAAGGCTCCCAAGGCGAAGACTTCTGGCAGAACGACAG
AAGCTTCTGCAGAGGAGGGCAGAATTGCCAGCGGTGACGAAAGTGGCAGT
GCTGCAACGCCCAAAAAACCCAGCCTGATGAACGTCGTCGCCGCCGAGGC
TGCCACCGCAGAAAAGTCGGCAACGGCGGCCGCAACTGCATTCTGGACGG
AGTGGGAGTCGCTGACGGGCGCCGAGCTGGCAGTTCGTTTCGACAACATG
GCGGCCGAAACGGTGCCGCGTCTGCTTCGGGAAGTGAGCGAGTGCGTCGG
CGTGACGTTGGGCACGGGTGCTGTTTCGGGATTAGCCTACCGTGCACTGT
CATCAGGAACATCTCTGCTCTCTCCATTGGCTGGAACTGCTGGCGGCGCC
GACGCCGACTCTGCCGCTGCGACAAGCGCCGCAACAGGAGACGCCACGGG
CGTGGAGGCTCCCGAAGCTTCTGGAACGGATCCAGCAGGTTCATCAGCGG
CAGCGACGACGGCAGCGCCGGCGGCGGTAACTGAAACGGCGGCGCCGGCG
CCGGTGACGCCGAAGCACGTCTCGCGCAAGGCGGCACGCAAGGCGCTGCG
GCAGGTGGAGCGCGCCAGGGCTTTCGGCGAGCCGCTGGAGCAGCGCATCC
GCCGCGCCGTCGCCAGGCAGGGCGGCTTCGGGACGCTTCTGGGCTCGGAG
CGGTCGCTCCTACAGCTCGAAACCGGCAGTGGCGGCGGCGACGGCGGCGG
CGGCGGCGGCGAGGACGACCGGTTGGGCTTTACAGTGATCGGCCTCAGCG
AGATCGCATTTGATTACAGCCTGCCGCGGCAGCGCTGGGTTCATCTCGCC
GTCGTCGCCGGCGCCGGCGCGACAGCGGGCAACGGCGGCGGCGGCGACGG
GTGCATGGTGCTGGACGTGTTCGAGGACGGGCGGCCTGTGGCGCGCGCCG
CCCTCACGGGTGCACTGACGCCATCGCTGCCGCAGCGCGACGTCGGCGGG
CGCGTCGACGCGGCGCACTGCCTGCTGCAGGAGCTGCGGGTGTGGCGGGG
CCAGCGGAGCAAACGGGAGCTGCGGCACGGCATGCGGGAGCTCTTGAAGC
CCGAGGCGGTCGGCGATGGGCTGGCGGCGTACTACACGCTGGAGGAAGGC
CGCGGCCGCCTCGTTCGGGACGCCACGGATCAGAGGTACCGGGCGCGCCT
GCACGGCGCGCGCCTGCAGTGGCTGTCCAGCCAGGCGGCCGCCGCAGGCT
GCGAGCCCCCGACGCCGTCGTGGCGCGAGCGTTACATCTGCCCCGTCGAG
CTCCGCCGC
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