mRNA_P-wetherbeei_contig19482.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19482.1.1
Unique NamemRNA_P-wetherbeei_contig19482.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19482.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19482contigP-wetherbeei_contig19482:2..1107 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1106
Hectar predicted targeting categoryother localisation
Exons1
Cds size741
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186173.8121035-UTR-P-wetherbeei_contig19482:1..971683186173.8121035-UTR-P-wetherbeei_contig19482:1..97Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19482 2..97 -
1683186173.8315878-UTR-P-wetherbeei_contig19482:838..11071683186173.8315878-UTR-P-wetherbeei_contig19482:838..1107Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig19482 839..1107 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186173.8216486-CDS-P-wetherbeei_contig19482:97..8381683186173.8216486-CDS-P-wetherbeei_contig19482:97..838Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19482 98..838 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19482.1.1prot_P-wetherbeei_contig19482.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19482 98..838 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19482.1.1

>prot_P-wetherbeei_contig19482.1.1 ID=prot_P-wetherbeei_contig19482.1.1|Name=mRNA_P-wetherbeei_contig19482.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=247bp
MLGTAAKTETATGGGGIRLNAGTVGRTRRVLFVDERVVQNLQIGAATSRT
GRRERLLRYDSKDNKTVRSLLAQRCKLHALIVLEGMEDSQGRRLRRTCRL
RGRSSERPWRSRGVSHGTARPCSVPCSATTWTRTPLERSTRTADSQAEAG
LVRRGGARAHRALANLVLDTKYAPFKNAYYYSRGEPWRIADLWEATQLCH
MEAKQEIAARSGGGASPAYGAIESADTSVKKRGTAASPREWQRMQR*
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mRNA from alignment at P-wetherbeei_contig19482:2..1107-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19482.1.1 ID=mRNA_P-wetherbeei_contig19482.1.1|Name=mRNA_P-wetherbeei_contig19482.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=1106bp|location=Sequence derived from alignment at P-wetherbeei_contig19482:2..1107- (Phaeothamnion wetherbeei SAG_119_79)
TGCGTCCCCACTGAGCCCGCTGATCGGGCTGCCGAGCGTCGCCATGCTGG
CGACGCCAGGGGCGCATTTCGTCGGAGCGGCTACCTCAAGTGCGTCAGTA
CGCATCCCGCCGCGCGACCAGTTGATCATCAACCTAATGGAGGCCGAGGG
AGCGCTGCAGCGAGCGCATAAGGCGCGCGCGCAGAGTATTCGCGCGGAGG
AAGCGATGGCAGCTGATTCGAAAGACGAGCCGTCGCTGGAGCGAGACGAC
GACAGCGTTCCATGCATTCATGCTTGGCACGGCGGCCAAAACCGAAACAG
CGACCGGGGGAGGCGGCATTCGCTTAAATGCCGGCACGGTGGGCCGCACA
AGGCGAGTCCTCTTCGTGGACGAGCGCGTGGTACAGAACCTGCAGATCGG
CGCAGCCACATCGAGAACCGGGCGGCGCGAGCGGCTGCTCCGCTACGACA
GCAAGGACAACAAGACCGTGCGGTCGCTGCTGGCGCAGCGCTGCAAGCTG
CACGCGCTGATAGTGCTCGAGGGCATGGAGGACAGTCAAGGACGACGGCT
ACGGCGCACTTGCCGCCTCAGGGGCCGCAGCAGCGAACGGCCATGGCGAT
CGCGAGGCGTCTCTCATGGCACTGCAAGGCCGTGTTCAGTCCCGTGCTCA
GCAACAACATGGACCCGGACTCCTCTCGAGCGCAGCACACGCACTGCTGA
CAGCCAAGCAGAAGCTGGCCTGGTGCGGCGAGGTGGTGCTAGAGCACATC
GAGCTCTCGCAAACCTTGTCCTTGATACTAAGTACGCGCCCTTCAAGAAC
GCCTATTACTACAGCCGCGGCGAGCCGTGGCGGATCGCCGATCTATGGGA
GGCGACTCAGCTCTGCCACATGGAGGCGAAACAAGAAATTGCTGCGCGCA
GCGGCGGCGGCGCATCTCCCGCATACGGCGCGATCGAGTCGGCGGACACG
AGTGTCAAGAAGCGCGGCACCGCCGCCAGTCCACGAGAGTGGCAGCGAAT
GCAACGGTAGCAGAGTCGGCAGCGGCGGCCGGTTCAGCCGCCGCAGCCGC
CGCAGCCAGGCGAAGGCGCGGTGGCAGCAGAAGCCGCCGGGCGCCAACGG
CGCCGG
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19482:2..1107-

>mRNA_P-wetherbeei_contig19482.1.1 ID=mRNA_P-wetherbeei_contig19482.1.1|Name=mRNA_P-wetherbeei_contig19482.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=741bp|location=Sequence derived from alignment at P-wetherbeei_contig19482:2..1107- (Phaeothamnion wetherbeei SAG_119_79)
ATGCTTGGCACGGCGGCCAAAACCGAAACAGCGACCGGGGGAGGCGGCAT
TCGCTTAAATGCCGGCACGGTGGGCCGCACAAGGCGAGTCCTCTTCGTGG
ACGAGCGCGTGGTACAGAACCTGCAGATCGGCGCAGCCACATCGAGAACC
GGGCGGCGCGAGCGGCTGCTCCGCTACGACAGCAAGGACAACAAGACCGT
GCGGTCGCTGCTGGCGCAGCGCTGCAAGCTGCACGCGCTGATAGTGCTCG
AGGGCATGGAGGACAGTCAAGGACGACGGCTACGGCGCACTTGCCGCCTC
AGGGGCCGCAGCAGCGAACGGCCATGGCGATCGCGAGGCGTCTCTCATGG
CACTGCAAGGCCGTGTTCAGTCCCGTGCTCAGCAACAACATGGACCCGGA
CTCCTCTCGAGCGCAGCACACGCACTGCTGACAGCCAAGCAGAAGCTGGC
CTGGTGCGGCGAGGTGGTGCTAGAGCACATCGAGCTCTCGCAAACCTTGT
CCTTGATACTAAGTACGCGCCCTTCAAGAACGCCTATTACTACAGCCGCG
GCGAGCCGTGGCGGATCGCCGATCTATGGGAGGCGACTCAGCTCTGCCAC
ATGGAGGCGAAACAAGAAATTGCTGCGCGCAGCGGCGGCGGCGCATCTCC
CGCATACGGCGCGATCGAGTCGGCGGACACGAGTGTCAAGAAGCGCGGCA
CCGCCGCCAGTCCACGAGAGTGGCAGCGAATGCAACGGTAG
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