mRNA_P-wetherbeei_contig1948.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1948.2.1
Unique NamemRNA_P-wetherbeei_contig1948.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1948.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1948contigP-wetherbeei_contig1948:1430..2377 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LKP7
PFAMsFAT,FATC,NUC194,PI3_PI4_kinase,SMG1
Model size740
Max annot lvl2759|Eukaryota
KEGG koko:K06642,ko:K07203,ko:K08873
KEGG Pathwayko01521,ko01522,ko03015,ko03450,ko04012,ko04066,ko04072,ko04110,ko04136,ko04138,ko04139,ko04140,ko04150,ko04151,ko04152,ko04211,ko04212,ko04213,ko04218,ko04371,ko04630,ko04659,ko04714,ko04910,ko04919,ko04920,ko04930,ko04931,ko05165,ko05167,ko05200,ko05205,ko05206,ko05210,ko05212,ko05214,ko05215,ko05221,ko05224,ko05225,ko05226,ko05230,ko05231,map01521,map01522,map03015,map03450,map04012,map04066,map04072,map04110,map04136,map04138,map04139,map04140,map04150,map04151,map04152,map04211,map04212,map04213,map04218,map04371,map04630,map04659,map04714,map04910,map04919,map04920,map04930,map04931,map05165,map05167,map05200,map05205,map05206,map05210,map05212,map05214,map05215,map05221,map05224,map05225,map05226,map05230,map05231
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.88e-09
EggNOG OGsCOG5032@1|root,KOG0891@2759|Eukaryota
EC2.7.11.1
Descriptionprotein serine/threonine kinase activity
Cds size573
COG categoryBDLTU
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03032,ko03400,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186173.67113-UTR-P-wetherbeei_contig1948:1429..15891683186173.67113-UTR-P-wetherbeei_contig1948:1429..1589Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1948 1430..1589 +
1683186173.6818643-UTR-P-wetherbeei_contig1948:1799..18041683186173.6818643-UTR-P-wetherbeei_contig1948:1799..1804Phaeothamnion wetherbeei SAG_119_79UTRP-wetherbeei_contig1948 1800..1804 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186173.6908658-CDS-P-wetherbeei_contig1948:1804..23771683186173.6908658-CDS-P-wetherbeei_contig1948:1804..2377Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1948 1805..2377 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1948.2.1prot_P-wetherbeei_contig1948.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1948 1805..2377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1948.2.1

>prot_P-wetherbeei_contig1948.2.1 ID=prot_P-wetherbeei_contig1948.2.1|Name=mRNA_P-wetherbeei_contig1948.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=191bp
MARRGGIAVLPRLLHELANTTEDSGRTVPKSIIRRFADLADRVDPQLPAH
EADAALVASLAFASEDPPDLLRYVQSEPAPKGGQGANQGAAIAAAAQVLK
HLGPGPHATRNAPRIRDACWDIYSKNKSASARAAALKLLRVAVAIRPISL
APAGWPHDRGPAEVADALRRALGNAASKVESTVCGEMFKLM
back to top

mRNA from alignment at P-wetherbeei_contig1948:1430..2377+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1948.2.1 ID=mRNA_P-wetherbeei_contig1948.2.1|Name=mRNA_P-wetherbeei_contig1948.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=948bp|location=Sequence derived from alignment at P-wetherbeei_contig1948:1430..2377+ (Phaeothamnion wetherbeei SAG_119_79)
GAAAAGTGGAAAAATAGGAAACTAACGTGGGAGTTGGCGAAACCCATACA
TTGAACACATTGCCATCGTATTCACTCACGCCGCGTTCTATGCGGCGCTG
AAGCCAAGAGGAACGGAGACTTCAAAGTCTTTGGAATGGACACTCTTCAG
TGACCAACAGGTGTAATGCTTTTCGGCCTGCCTTCAGTGTCCTCTTTCTT
GTGTGTAACCCATTCGTGAAGAAGAGAAGTTGAAGGCTTCCGGTCCCATT
TCTTGCCTCGTCTTCCTTCGCGAGACGAGGCTCTCGTTCTTTCCTGTGCA
GGCCTTGGCTGCCGCCTTAAATGCCGCTACCGTTCGCAACTCACTCGCGC
CCAACAATCCGCACCTGCAGCAATCATGGCGCGCAGAGGAGGCATCGCCG
TCCTGCCGCGGCTGCTCCATGAGCTCGCCAACACCACCGAGGACTCCGGG
CGCACCGTGCCCAAGTCCATCATCCGGCGCTTCGCGGACCTGGCCGACCG
CGTCGACCCGCAGCTCCCAGCGCACGAGGCCGACGCCGCCCTCGTCGCCT
CGCTAGCCTTTGCCAGCGAAGATCCGCCGGACCTGCTGCGCTACGTCCAG
TCCGAGCCCGCCCCGAAGGGCGGCCAGGGCGCCAACCAGGGCGCCGCCAT
CGCCGCCGCCGCCCAGGTTCTGAAGCACCTCGGCCCCGGCCCGCACGCGA
CGCGCAATGCGCCGCGCATCCGCGATGCCTGCTGGGACATCTACAGCAAG
AACAAATCGGCATCGGCGCGCGCCGCCGCGCTCAAGCTGCTGCGGGTGGC
GGTGGCGATACGGCCCATCAGCCTGGCGCCGGCCGGCTGGCCGCACGACC
GCGGCCCGGCCGAGGTAGCGGATGCGCTGCGACGGGCGCTCGGCAACGCT
GCTTCCAAGGTCGAGAGCACGGTGTGCGGGGAGATGTTTAAGCTCATG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1948:1430..2377+

>mRNA_P-wetherbeei_contig1948.2.1 ID=mRNA_P-wetherbeei_contig1948.2.1|Name=mRNA_P-wetherbeei_contig1948.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=573bp|location=Sequence derived from alignment at P-wetherbeei_contig1948:1430..2377+ (Phaeothamnion wetherbeei SAG_119_79)
ATGGCGCGCAGAGGAGGCATCGCCGTCCTGCCGCGGCTGCTCCATGAGCT
CGCCAACACCACCGAGGACTCCGGGCGCACCGTGCCCAAGTCCATCATCC
GGCGCTTCGCGGACCTGGCCGACCGCGTCGACCCGCAGCTCCCAGCGCAC
GAGGCCGACGCCGCCCTCGTCGCCTCGCTAGCCTTTGCCAGCGAAGATCC
GCCGGACCTGCTGCGCTACGTCCAGTCCGAGCCCGCCCCGAAGGGCGGCC
AGGGCGCCAACCAGGGCGCCGCCATCGCCGCCGCCGCCCAGGTTCTGAAG
CACCTCGGCCCCGGCCCGCACGCGACGCGCAATGCGCCGCGCATCCGCGA
TGCCTGCTGGGACATCTACAGCAAGAACAAATCGGCATCGGCGCGCGCCG
CCGCGCTCAAGCTGCTGCGGGTGGCGGTGGCGATACGGCCCATCAGCCTG
GCGCCGGCCGGCTGGCCGCACGACCGCGGCCCGGCCGAGGTAGCGGATGC
GCTGCGACGGGCGCTCGGCAACGCTGCTTCCAAGGTCGAGAGCACGGTGT
GCGGGGAGATGTTTAAGCTCATG
back to top