prot_P-wetherbeei_contig19475.2.1 (polypeptide) Phaeothamnion wetherbeei SAG_119_79

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_P-wetherbeei_contig19475.2.1
Unique Nameprot_P-wetherbeei_contig19475.2.1
Typepolypeptide
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Sequence length85
Homology
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A4R5QGI3_9PROT (XRE family transcriptional regulator n=2 Tax=Acetobacteraceae TaxID=433 RepID=A0A4R5QGI3_9PROT)

HSP 1 Score: 57.4 bits (137), Expect = 3.740e-9
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 0
Query:   13 FGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTP 68
            FGA+++ELR  AG+TQ AL KK GV+Q  ++E E G+  P    + +LA ALGV P
Sbjct:    9 FGAKVKELREAAGLTQVALAKKAGVQQGQLSEIEIGKRIPRLDTIKKLARALGVPP 64          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A0S8BZ51_9DELT (HTH cro/C1-type domain-containing protein n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A0S8BZ51_9DELT)

HSP 1 Score: 57.4 bits (137), Expect = 4.650e-9
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 0
Query:   11 ERFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVT 67
            E+ GARLRELR  AG+TQA L ++ G+ + +IA  E GR +PS   + R+A A+GV+
Sbjct:   13 EKLGARLRELRLAAGLTQAELARRTGIHRPNIARVEAGRHTPSLETLARIANAIGVS 69          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: UPI0019D56EB9 (helix-turn-helix domain-containing protein n=1 Tax=Dankookia rubra TaxID=1442381 RepID=UPI0019D56EB9)

HSP 1 Score: 57.4 bits (137), Expect = 9.820e-9
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 0
Query:   13 FGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTP 68
            FGA+++ELR  AG+TQ AL KK GV+Q  ++E E G+  P    + +LA ALGV P
Sbjct:   50 FGAKVKELREAAGLTQVALAKKAGVQQGQLSEIEIGKRIPRLDTIKKLARALGVPP 105          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A847F1F0_9DELT (Helix-turn-helix transcriptional regulator n=1 Tax=Sandaracinaceae bacterium TaxID=2510337 RepID=A0A847F1F0_9DELT)

HSP 1 Score: 59.3 bits (142), Expect = 1.500e-8
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 0
Query:   13 FGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTP 68
             GAR+RELR  AGITQA L ++ G+ + +IA  E GR +PS   + RLA ALGV P
Sbjct:  196 LGARIRELRQYAGITQAELARRTGIHRPNIARVEAGRHTPSLETISRLAEALGVNP 251          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A2D5ELN7_9DELT (HTH cro/C1-type domain-containing protein n=2 Tax=Myxococcales TaxID=29 RepID=A0A2D5ELN7_9DELT)

HSP 1 Score: 57.8 bits (138), Expect = 6.140e-8
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 0
Query:   12 RFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGV 66
            R GARLRELR +AG+TQA L ++ G+ + +IA  E GR +PS   + RLA A+GV
Sbjct:  211 RLGARLRELRLEAGLTQAELARRTGIHRPNIARVEAGRHTPSLETLARLAGAIGV 265          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A7V6HEI8_9BACT (ImmA/IrrE family metallo-endopeptidase n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7V6HEI8_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 5.060e-7
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 0
Query:   14 GARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTPDA 70
            GAR+R+LR +A ++Q  L ++ G+RQ  +   E G++ PS P ++RLA  LGVT DA
Sbjct:    3 GARIRDLRRRAHLSQGELARRLGMRQGPVCNIELGKNLPSTPVLLRLAEVLGVTADA 59          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: UPI0009E2C25F (helix-turn-helix domain-containing protein n=1 Tax=Caenimonas sp. SL110 TaxID=1450524 RepID=UPI0009E2C25F)

HSP 1 Score: 50.8 bits (120), Expect = 1.440e-6
Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 0
Query:    6 AEQVAERFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTP 68
            A+ + +RFG R+RELR+ AG +Q A   KCG  ++ ++  ERG  +PS   +   A AL V P
Sbjct:    2 AKNLRQRFGERVRELRTAAGFSQEAFADKCGYARSYMSRVERGTGNPSLDAIEVFAKALRVEP 64          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A2R7S1L6_9BURK (DNA-binding protein n=1 Tax=Pelomonas sp. HMWF004 TaxID=2056841 RepID=A0A2R7S1L6_9BURK)

HSP 1 Score: 53.1 bits (126), Expect = 1.590e-6
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 0
Query:    7 EQVAERFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVT 67
            E + ER G RL ELR+ AG++  AL  K GV +++I+  ERG+SSP+   + +L+ ALGV+
Sbjct:    3 ENITERIGRRLHELRAAAGLSLDALAHKSGVSRSNISLIERGQSSPTAVVLDKLSSALGVS 63          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A059G2Q8_9PROT (Helix-turn-helix domain-containing protein n=2 Tax=Hyphomonas oceanitis TaxID=81033 RepID=A0A059G2Q8_9PROT)

HSP 1 Score: 51.6 bits (122), Expect = 1.930e-6
Identity = 32/84 (38.10%), Postives = 44/84 (52.38%), Query Frame = 0
Query:   12 RFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTPD-----------AFTAIPGEKENRNFD 84
            +F  RL   R K G +QA LG K  ++ A+I  +E+GR SPS+  V +LA AL ++ D           A TA  GE +  N D
Sbjct:   14 KFAERLLSAREKRGFSQAELGAKADLQPAAIGHFEKGRRSPSFQNVRKLANALNISADYLLGRTDSMEGATTAFRGEDKLNNDD 97          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A0C7NND4_9THEO (Cro/C1-type helix-turn-helix domain n=1 Tax=Moorella glycerini TaxID=55779 RepID=A0A0C7NND4_9THEO)

HSP 1 Score: 51.2 bits (121), Expect = 2.000e-6
Identity = 25/71 (35.21%), Postives = 43/71 (60.56%), Query Frame = 0
Query:   13 FGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTPDAFTAIPGEKENRNF 83
            FGAR+++LR  AG++Q  L ++ G+ Q+S++  E G  SP+   ++ +  ALG+T   F    GE E ++ 
Sbjct:    3 FGARIKQLRETAGLSQNELARRAGIAQSSLSYLETGAKSPNVETLLHICKALGITVSEFL---GENEGQSL 70          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4R5QGI3_9PROT3.740e-950.00XRE family transcriptional regulator n=2 Tax=Aceto... [more]
A0A0S8BZ51_9DELT4.650e-949.12HTH cro/C1-type domain-containing protein n=2 Tax=... [more]
UPI0019D56EB99.820e-950.00helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A847F1F0_9DELT1.500e-853.57Helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A2D5ELN7_9DELT6.140e-852.73HTH cro/C1-type domain-containing protein n=2 Tax=... [more]
A0A7V6HEI8_9BACT5.060e-745.61ImmA/IrrE family metallo-endopeptidase n=1 Tax=Len... [more]
UPI0009E2C25F1.440e-641.27helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A2R7S1L6_9BURK1.590e-645.90DNA-binding protein n=1 Tax=Pelomonas sp. HMWF004 ... [more]
A0A059G2Q8_9PROT1.930e-638.10Helix-turn-helix domain-containing protein n=2 Tax... [more]
A0A0C7NND4_9THEO2.000e-635.21Cro/C1-type helix-turn-helix domain n=1 Tax=Moorel... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001387Cro/C1-type helix-turn-helix domainSMARTSM00530mbf_short4coord: 16..71
e-value: 3.1E-15
score: 66.6
IPR001387Cro/C1-type helix-turn-helix domainPROSITEPS50943HTH_CROC1coord: 17..71
score: 14.557316
IPR001387Cro/C1-type helix-turn-helix domainCDDcd00093HTH_XREcoord: 14..71
e-value: 6.89168E-17
score: 65.6522
IPR010982Lambda repressor-like, DNA-binding domain superfamilyGENE3D1.10.260.40coord: 2..79
e-value: 2.3E-19
score: 71.0
IPR010982Lambda repressor-like, DNA-binding domain superfamilySUPERFAMILY47413lambda repressor-like DNA-binding domainscoord: 10..77
NoneNo IPR availablePFAMPF13560HTH_31coord: 12..69
e-value: 1.2E-15
score: 57.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19475contigP-wetherbeei_contig19475:541..795 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19475.2.1mRNA_P-wetherbeei_contig19475.2.1Phaeothamnion wetherbeei SAG_119_79mRNAP-wetherbeei_contig19475 541..795 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_P-wetherbeei_contig19475.2.1 ID=prot_P-wetherbeei_contig19475.2.1|Name=mRNA_P-wetherbeei_contig19475.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
MDLEYAEQVAERFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRS
SPSWPYVVRLAFALGVTPDAFTAIPGEKENRNFD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001387Cro/C1-type_HTH
IPR010982Lambda_DNA-bd_dom_sf