mRNA_P-wetherbeei_contig19475.2.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19475.2.1
Unique NamemRNA_P-wetherbeei_contig19475.2.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A4R5QGI3_9PROT (XRE family transcriptional regulator n=2 Tax=Acetobacteraceae TaxID=433 RepID=A0A4R5QGI3_9PROT)

HSP 1 Score: 57.4 bits (137), Expect = 3.740e-9
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   37 FGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTP 204
            FGA+++ELR  AG+TQ AL KK GV+Q  ++E E G+  P    + +LA ALGV P
Sbjct:    9 FGAKVKELREAAGLTQVALAKKAGVQQGQLSEIEIGKRIPRLDTIKKLARALGVPP 64          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A0S8BZ51_9DELT (HTH cro/C1-type domain-containing protein n=2 Tax=Deltaproteobacteria TaxID=28221 RepID=A0A0S8BZ51_9DELT)

HSP 1 Score: 57.4 bits (137), Expect = 4.650e-9
Identity = 28/57 (49.12%), Postives = 40/57 (70.18%), Query Frame = 1
Query:   31 ERFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVT 201
            E+ GARLRELR  AG+TQA L ++ G+ + +IA  E GR +PS   + R+A A+GV+
Sbjct:   13 EKLGARLRELRLAAGLTQAELARRTGIHRPNIARVEAGRHTPSLETLARIANAIGVS 69          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: UPI0019D56EB9 (helix-turn-helix domain-containing protein n=1 Tax=Dankookia rubra TaxID=1442381 RepID=UPI0019D56EB9)

HSP 1 Score: 57.4 bits (137), Expect = 9.820e-9
Identity = 28/56 (50.00%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   37 FGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTP 204
            FGA+++ELR  AG+TQ AL KK GV+Q  ++E E G+  P    + +LA ALGV P
Sbjct:   50 FGAKVKELREAAGLTQVALAKKAGVQQGQLSEIEIGKRIPRLDTIKKLARALGVPP 105          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A847F1F0_9DELT (Helix-turn-helix transcriptional regulator n=1 Tax=Sandaracinaceae bacterium TaxID=2510337 RepID=A0A847F1F0_9DELT)

HSP 1 Score: 59.3 bits (142), Expect = 1.500e-8
Identity = 30/56 (53.57%), Postives = 38/56 (67.86%), Query Frame = 1
Query:   37 FGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTP 204
             GAR+RELR  AGITQA L ++ G+ + +IA  E GR +PS   + RLA ALGV P
Sbjct:  196 LGARIRELRQYAGITQAELARRTGIHRPNIARVEAGRHTPSLETISRLAEALGVNP 251          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A2D5ELN7_9DELT (HTH cro/C1-type domain-containing protein n=2 Tax=Myxococcales TaxID=29 RepID=A0A2D5ELN7_9DELT)

HSP 1 Score: 57.8 bits (138), Expect = 6.140e-8
Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1
Query:   34 RFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGV 198
            R GARLRELR +AG+TQA L ++ G+ + +IA  E GR +PS   + RLA A+GV
Sbjct:  211 RLGARLRELRLEAGLTQAELARRTGIHRPNIARVEAGRHTPSLETLARLAGAIGV 265          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A7V6HEI8_9BACT (ImmA/IrrE family metallo-endopeptidase n=1 Tax=Lentisphaerae bacterium TaxID=1932692 RepID=A0A7V6HEI8_9BACT)

HSP 1 Score: 55.5 bits (132), Expect = 5.060e-7
Identity = 26/57 (45.61%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   40 GARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTPDA 210
            GAR+R+LR +A ++Q  L ++ G+RQ  +   E G++ PS P ++RLA  LGVT DA
Sbjct:    3 GARIRDLRRRAHLSQGELARRLGMRQGPVCNIELGKNLPSTPVLLRLAEVLGVTADA 59          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: UPI0009E2C25F (helix-turn-helix domain-containing protein n=1 Tax=Caenimonas sp. SL110 TaxID=1450524 RepID=UPI0009E2C25F)

HSP 1 Score: 50.8 bits (120), Expect = 1.440e-6
Identity = 26/63 (41.27%), Postives = 38/63 (60.32%), Query Frame = 1
Query:   16 AEQVAERFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTP 204
            A+ + +RFG R+RELR+ AG +Q A   KCG  ++ ++  ERG  +PS   +   A AL V P
Sbjct:    2 AKNLRQRFGERVRELRTAAGFSQEAFADKCGYARSYMSRVERGTGNPSLDAIEVFAKALRVEP 64          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A2R7S1L6_9BURK (DNA-binding protein n=1 Tax=Pelomonas sp. HMWF004 TaxID=2056841 RepID=A0A2R7S1L6_9BURK)

HSP 1 Score: 53.1 bits (126), Expect = 1.590e-6
Identity = 28/61 (45.90%), Postives = 42/61 (68.85%), Query Frame = 1
Query:   19 EQVAERFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVT 201
            E + ER G RL ELR+ AG++  AL  K GV +++I+  ERG+SSP+   + +L+ ALGV+
Sbjct:    3 ENITERIGRRLHELRAAAGLSLDALAHKSGVSRSNISLIERGQSSPTAVVLDKLSSALGVS 63          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A059G2Q8_9PROT (Helix-turn-helix domain-containing protein n=2 Tax=Hyphomonas oceanitis TaxID=81033 RepID=A0A059G2Q8_9PROT)

HSP 1 Score: 51.6 bits (122), Expect = 1.930e-6
Identity = 32/84 (38.10%), Postives = 44/84 (52.38%), Query Frame = 1
Query:   34 RFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTPD-----------AFTAIPGEKENRNFD 252
            +F  RL   R K G +QA LG K  ++ A+I  +E+GR SPS+  V +LA AL ++ D           A TA  GE +  N D
Sbjct:   14 KFAERLLSAREKRGFSQAELGAKADLQPAAIGHFEKGRRSPSFQNVRKLANALNISADYLLGRTDSMEGATTAFRGEDKLNNDD 97          
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Match: A0A0C7NND4_9THEO (Cro/C1-type helix-turn-helix domain n=1 Tax=Moorella glycerini TaxID=55779 RepID=A0A0C7NND4_9THEO)

HSP 1 Score: 51.2 bits (121), Expect = 2.000e-6
Identity = 25/71 (35.21%), Postives = 43/71 (60.56%), Query Frame = 1
Query:   37 FGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRSSPSWPYVVRLAFALGVTPDAFTAIPGEKENRNF 249
            FGAR+++LR  AG++Q  L ++ G+ Q+S++  E G  SP+   ++ +  ALG+T   F    GE E ++ 
Sbjct:    3 FGARIKQLRETAGLSQNELARRAGIAQSSLSYLETGAKSPNVETLLHICKALGITVSEFL---GENEGQSL 70          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19475.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4R5QGI3_9PROT3.740e-950.00XRE family transcriptional regulator n=2 Tax=Aceto... [more]
A0A0S8BZ51_9DELT4.650e-949.12HTH cro/C1-type domain-containing protein n=2 Tax=... [more]
UPI0019D56EB99.820e-950.00helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A847F1F0_9DELT1.500e-853.57Helix-turn-helix transcriptional regulator n=1 Tax... [more]
A0A2D5ELN7_9DELT6.140e-852.73HTH cro/C1-type domain-containing protein n=2 Tax=... [more]
A0A7V6HEI8_9BACT5.060e-745.61ImmA/IrrE family metallo-endopeptidase n=1 Tax=Len... [more]
UPI0009E2C25F1.440e-641.27helix-turn-helix domain-containing protein n=1 Tax... [more]
A0A2R7S1L6_9BURK1.590e-645.90DNA-binding protein n=1 Tax=Pelomonas sp. HMWF004 ... [more]
A0A059G2Q8_9PROT1.930e-638.10Helix-turn-helix domain-containing protein n=2 Tax... [more]
A0A0C7NND4_9THEO2.000e-635.21Cro/C1-type helix-turn-helix domain n=1 Tax=Moorel... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19475contigP-wetherbeei_contig19475:541..795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog644968.DFW101_2271
PFAMsGAF,GAF_2,HAMP,HATPase_c,HTH_31,HisKA,Hpt,PAS_4,PAS_8,PAS_9,Response_reg,SBP_bac_3
Model size255
Max annot lvl28221|Deltaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.13e-07
EggNOG OGsCOG0642@1|root,COG4251@1|root,COG2205@2|Bacteria,COG4251@2|Bacteria,1NRP8@1224|Proteobacteria,42M0Y@68525|delta/epsilon subdivisions,2WIR4@28221|Deltaproteobacteria,2M7T3@213115|Desulfovibrionales
Descriptionhistidine kinase A domain protein
Cds size255
COG categoryT
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186173.545433-CDS-P-wetherbeei_contig19475:540..7951683186173.545433-CDS-P-wetherbeei_contig19475:540..795Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19475 541..795 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19475.2.1prot_P-wetherbeei_contig19475.2.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19475 541..795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19475.2.1

>prot_P-wetherbeei_contig19475.2.1 ID=prot_P-wetherbeei_contig19475.2.1|Name=mRNA_P-wetherbeei_contig19475.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=85bp
MDLEYAEQVAERFGARLRELRSKAGITQAALGKKCGVRQASIAEYERGRS
SPSWPYVVRLAFALGVTPDAFTAIPGEKENRNFD*
back to top

mRNA from alignment at P-wetherbeei_contig19475:541..795-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19475.2.1 ID=mRNA_P-wetherbeei_contig19475.2.1|Name=mRNA_P-wetherbeei_contig19475.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig19475:541..795- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCTGGAATATGCTGAACAGGTAGCGGAGCGGTTCGGTGCTCGGCT ACGCGAGTTGCGCAGCAAGGCCGGGATTACGCAAGCCGCTCTAGGCAAAA AATGCGGCGTTCGTCAGGCTTCCATTGCCGAATACGAGCGCGGCAGGTCG TCGCCAAGCTGGCCCTATGTCGTTCGCCTCGCATTCGCGCTCGGTGTGAC GCCCGATGCCTTCACCGCGATCCCTGGCGAAAAGGAAAATCGAAATTTCG ATTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig19475:541..795-

>mRNA_P-wetherbeei_contig19475.2.1 ID=mRNA_P-wetherbeei_contig19475.2.1|Name=mRNA_P-wetherbeei_contig19475.2.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=255bp|location=Sequence derived from alignment at P-wetherbeei_contig19475:541..795- (Phaeothamnion wetherbeei SAG_119_79)
ATGGACCTGGAATATGCTGAACAGGTAGCGGAGCGGTTCGGTGCTCGGCT
ACGCGAGTTGCGCAGCAAGGCCGGGATTACGCAAGCCGCTCTAGGCAAAA
AATGCGGCGTTCGTCAGGCTTCCATTGCCGAATACGAGCGCGGCAGGTCG
TCGCCAAGCTGGCCCTATGTCGTTCGCCTCGCATTCGCGCTCGGTGTGAC
GCCCGATGCCTTCACCGCGATCCCTGGCGAAAAGGAAAATCGAAATTTCG
ATTGA
back to top