mRNA_P-wetherbeei_contig19467.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19467.1.1
Unique NamemRNA_P-wetherbeei_contig19467.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19467.1.1 vs. uniprot
Match: A0A4R6WUL0_9PROT (Nucleoside ABC transporter membrane protein n=1 Tax=Dongia mobilis TaxID=578943 RepID=A0A4R6WUL0_9PROT)

HSP 1 Score: 273 bits (698), Expect = 3.860e-89
Identity = 143/163 (87.73%), Postives = 154/163 (94.48%), Query Frame = 1
Query:    1 PRLPETTIHSGVLIALAVVVLVHLMMTRTAFGLKLQVVGANPAAAIHAGLNVAKLTIATFAISAGLIGLGGAVEILGVWGTVRADWNPAFGLLVVPLVFLARFNGYAVIGFTLFFSALMIGGESAARRIGVPQNYVLVLVALLLIFLAVVEYLDHLRRKRAGA 489
            PRL +TTIH G++IAL V+VLVH+MMTRTAFGLKLQVVGANPAAA+HAGL V  LTIATFAISAGLIGLGGAVEILGVWG VRADWNPAFGLLVVPLVFLARFNGYA IGFTLFFSALMIGG+SAARR+GVP ++VLVLVALLLIFLAVVEYLDHLRRK+AGA
Sbjct:  200 PRLFDTTIHLGLIIALVVIVLVHVMMTRTAFGLKLQVVGANPAAAVHAGLRVGWLTIATFAISAGLIGLGGAVEILGVWGVVRADWNPAFGLLVVPLVFLARFNGYATIGFTLFFSALMIGGDSAARRVGVPNDFVLVLVALLLIFLAVVEYLDHLRRKKAGA 362          
BLAST of mRNA_P-wetherbeei_contig19467.1.1 vs. uniprot
Match: A0A5C7NXZ6_9PROT (ABC transporter permease n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A5C7NXZ6_9PROT)

HSP 1 Score: 253 bits (645), Expect = 4.300e-81
Identity = 129/160 (80.62%), Postives = 149/160 (93.12%), Query Frame = 1
Query:    1 PRLPETTIHSGVLIALAVVVLVHLMMTRTAFGLKLQVVGANPAAAIHAGLNVAKLTIATFAISAGLIGLGGAVEILGVWGTVRADWNPAFGLLVVPLVFLARFNGYAVIGFTLFFSALMIGGESAARRIGVPQNYVLVLVALLLIFLAVVEYLDHLRRKR 480
            PRL +TT+H+G+LIAL V+VLVH+MMTRT+FGLKLQ+VGANP AA+HAGLNVA LTIATFA+SAGLIGL G++EILGVWGTVRADWNPA+GL+VVPLVFLARF+G   IGFTLFF+ LMIGGESA+RRIGVPQ+YVLVLVALLL+FLA+VEYLD L RKR
Sbjct:  202 PRLFDTTVHAGILIALVVIVLVHIMMTRTSFGLKLQIVGANPRAAVHAGLNVAWLTIATFALSAGLIGLAGSIEILGVWGTVRADWNPAYGLVVVPLVFLARFHGIGTIGFTLFFAILMIGGESASRRIGVPQHYVLVLVALLLLFLALVEYLDQLWRKR 361          
BLAST of mRNA_P-wetherbeei_contig19467.1.1 vs. uniprot
Match: A0A2E5PAE4_9PROT (ABC transporter permease n=2 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2E5PAE4_9PROT)

HSP 1 Score: 242 bits (618), Expect = 1.720e-77
Identity = 126/162 (77.78%), Postives = 143/162 (88.27%), Query Frame = 1
Query:    4 RLPETTIHSGVLIALAVVVLVHLMMTRTAFGLKLQVVGANPAAAIHAGLNVAKLTIATFAISAGLIGLGGAVEILGVWGTVRADWNPAFGLLVVPLVFLARFNGYAVIGFTLFFSALMIGGESAARRIGVPQNYVLVLVALLLIFLAVVEYLDHLRRKRAGA 489
            RL +TTIHSG++I+L  V  VH +MTRTAFGLKLQ+VG+NP AA HAGLNV +LT ATFAISAGL+GLGGAVEILGVWGT+RADWNPA+GLLV+PLVFLARF+G AVIGFTL F+ LMIGGESA+RR+GVP  YVLVLVALLLIFLA+VEYLDHL  KR  A
Sbjct:  166 RLFDTTIHSGIIISLVAVFAVHFVMTRTAFGLKLQIVGSNPRAAKHAGLNVGRLTFATFAISAGLVGLGGAVEILGVWGTMRADWNPAYGLLVIPLVFLARFHGIAVIGFTLLFAILMIGGESASRRMGVPNFYVLVLVALLLIFLALVEYLDHLSHKRKKA 327          
BLAST of mRNA_P-wetherbeei_contig19467.1.1 vs. uniprot
Match: A0A2S6R4V8_9PROT (Uncharacterized protein n=1 Tax=Alphaproteobacteria bacterium MarineAlpha10_Bin2 TaxID=2013104 RepID=A0A2S6R4V8_9PROT)

HSP 1 Score: 242 bits (618), Expect = 3.140e-77
Identity = 126/162 (77.78%), Postives = 144/162 (88.89%), Query Frame = 1
Query:    4 RLPETTIHSGVLIALAVVVLVHLMMTRTAFGLKLQVVGANPAAAIHAGLNVAKLTIATFAISAGLIGLGGAVEILGVWGTVRADWNPAFGLLVVPLVFLARFNGYAVIGFTLFFSALMIGGESAARRIGVPQNYVLVLVALLLIFLAVVEYLDHLRRKRAGA 489
            RL +TTIHSG++IAL  V  VH +MTRTAFGL+LQ+VGANP AA HAG++V +LT ATFA+SAGL GLGGAVEILGVWGT+RADWNPA+GLLVVPLVFLARFNG AVIGFTLFF+ LMIGGESA+RR+GVP  YVLVLVALLLIFLA+VEYLDH+ R+R  A
Sbjct:  186 RLFDTTIHSGIIIALLAVFAVHFVMTRTAFGLRLQIVGANPRAAKHAGMSVGRLTYATFALSAGLAGLGGAVEILGVWGTMRADWNPAYGLLVVPLVFLARFNGIAVIGFTLFFAILMIGGESASRRLGVPNFYVLVLVALLLIFLALVEYLDHISRQRKKA 347          
BLAST of mRNA_P-wetherbeei_contig19467.1.1 vs. uniprot
Match: UPI0014223B88 (ABC transporter permease n=1 Tax=Pelagibius litoralis TaxID=374515 RepID=UPI0014223B88)

HSP 1 Score: 242 bits (617), Expect = 5.980e-77
Identity = 128/163 (78.53%), Postives = 143/163 (87.73%), Query Frame = 1
Query:    1 PRLPETTIHSGVLIALAVVVLVHLMMTRTAFGLKLQVVGANPAAAIHAGLNVAKLTIATFAISAGLIGLGGAVEILGVWGTVRADWNPAFGLLVVPLVFLARFNGYAVIGFTLFFSALMIGGESAARRIGVPQNYVLVLVALLLIFLAVVEYLDHLRRKRAGA 489
            PRL +TTIHSGVLIAL  ++LVHLMMTRTAFGLKLQVVGANP AA+H GL V KLT ATFAISAGL GL G+VEILGVWGT+RADWNPA+GLLV+PLVFLARF+G A IGF LFF+ LMIGGESA+RR+GVPQ YVLVLV+LLLIF A+VEYLD   RK+A A
Sbjct:  195 PRLFDTTIHSGVLIALVALLLVHLMMTRTAFGLKLQVVGANPRAAVHTGLAVGKLTYATFAISAGLAGLAGSVEILGVWGTMRADWNPAYGLLVIPLVFLARFHGAATIGFVLFFAVLMIGGESASRRLGVPQYYVLVLVSLLLIFFALVEYLDQRWRKQARA 357          
BLAST of mRNA_P-wetherbeei_contig19467.1.1 vs. uniprot
Match: A0A5J6N5S1_9PROT (ABC transporter permease n=2 Tax=Hypericibacter TaxID=2705399 RepID=A0A5J6N5S1_9PROT)

HSP 1 Score: 229 bits (583), Expect = 9.970e-72
Identity = 121/160 (75.62%), Postives = 139/160 (86.88%), Query Frame = 1
Query:    1 PRLPETTIHSGVLIALAVVVLVHLMMTRTAFGLKLQVVGANPAAAIHAGLNVAKLTIATFAISAGLIGLGGAVEILGVWGTVRADWNPAFGLLVVPLVFLARFNGYAVIGFTLFFSALMIGGESAARRIGVPQNYVLVLVALLLIFLAVVEYLDHLRRKR 480
            PRL  +TIHSG+LIALA V++VH +MTRT+FGLKL VVGANP AAIHAGLNV  LT ATFAISAGL+GLGGAV+ILGVWG+VRADWNP+FGLLVVPLVFLARF+G A I F +FF+ L +GGESAA R+GVP  Y LVLVALLLIFLA+VEYLD+ R+ R
Sbjct:  202 PRLFGSTIHSGILIALAAVLIVHFVMTRTSFGLKLCVVGANPRAAIHAGLNVGFLTYATFAISAGLVGLGGAVDILGVWGSVRADWNPSFGLLVVPLVFLARFHGLATIAFVMFFAVLQVGGESAAVRLGVPTFYTLVLVALLLIFLALVEYLDYRRQVR 361          
BLAST of mRNA_P-wetherbeei_contig19467.1.1 vs. uniprot
Match: A0A2E9YMD7_9CHLR (ABC transporter permease n=3 Tax=root TaxID=1 RepID=A0A2E9YMD7_9CHLR)

HSP 1 Score: 221 bits (562), Expect = 8.060e-69
Identity = 114/163 (69.94%), Postives = 135/163 (82.82%), Query Frame = 1
Query:    1 PRLPETTIHSGVLIALAVVVLVHLMMTRTAFGLKLQVVGANPAAAIHAGLNVAKLTIATFAISAGLIGLGGAVEILGVWGTVRADWNPAFGLLVVPLVFLARFNGYAVIGFTLFFSALMIGGESAARRIGVPQNYVLVLVALLLIFLAVVEYLDHLRRKRAGA 489
            PRL +T IH GV+ A+  V+ VH +MTRTAFGL+LQVVGANP AA+H+GLNV +LT   F +SAGL G+GGAVEILGVWGTVRADWNPA+GLLV PLVFLARF+G   I F +FF+ LMIGGESA+RR+GVP  +VLVLV+LLL+FLA+VEYLDH  R R GA
Sbjct:  181 PRLFDTIIHQGVVFAVIAVLAVHFLMTRTAFGLRLQVVGANPKAAVHSGLNVRRLTYVAFGLSAGLAGMGGAVEILGVWGTVRADWNPAYGLLVFPLVFLARFHGIGTIAFVVFFAVLMIGGESASRRLGVPTFFVLVLVSLLLVFLAIVEYLDH--RWRQGA 341          
BLAST of mRNA_P-wetherbeei_contig19467.1.1 vs. uniprot
Match: A0A3C0TCF1_9GAMM (ABC transporter permease n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=A0A3C0TCF1_9GAMM)

HSP 1 Score: 218 bits (554), Expect = 1.260e-67
Identity = 109/158 (68.99%), Postives = 130/158 (82.28%), Query Frame = 1
Query:    4 RLPETTIHSGVLIALAVVVLVHLMMTRTAFGLKLQVVGANPAAAIHAGLNVAKLTIATFAISAGLIGLGGAVEILGVWGTVRADWNPAFGLLVVPLVFLARFNGYAVIGFTLFFSALMIGGESAARRIGVPQNYVLVLVALLLIFLAVVEYLDHLRRK 477
            R+ +T IH GV+  L +V+LVH MMTRTAFGL+LQ VGA+P  A+H GLNV  LT ATF +SA L G+ GAVE+LGVWGTVRADWNPA+GLLV+PLVFLARFNG+  I F  FF+ L+IGGESAARR+GVP  +VLVLV+LLL+FLA+VEYLDH  RK
Sbjct:  182 RIADTVIHEGVIFGLVMVLLVHFMMTRTAFGLQLQTVGASPKTAVHVGLNVKLLTYATFCLSAALAGMAGAVEVLGVWGTVRADWNPAYGLLVIPLVFLARFNGFGTIAFVWFFAVLLIGGESAARRLGVPTYFVLVLVSLLLLFLAIVEYLDHRWRK 339          
BLAST of mRNA_P-wetherbeei_contig19467.1.1 vs. uniprot
Match: A0A1Y6CJD5_9HYPH (Nucleoside ABC transporter membrane protein n=1 Tax=Tistlia consotensis USBA 355 TaxID=560819 RepID=A0A1Y6CJD5_9HYPH)

HSP 1 Score: 218 bits (554), Expect = 1.730e-67
Identity = 111/162 (68.52%), Postives = 134/162 (82.72%), Query Frame = 1
Query:    4 RLPETTIHSGVLIALAVVVLVHLMMTRTAFGLKLQVVGANPAAAIHAGLNVAKLTIATFAISAGLIGLGGAVEILGVWGTVRADWNPAFGLLVVPLVFLARFNGYAVIGFTLFFSALMIGGESAARRIGVPQNYVLVLVALLLIFLAVVEYLDHLRRKRAGA 489
            RL  TTIH GVL+ LA V+ VH +M+RT+ GLKLQ+VG+NP  AIHAG++V +LT   FAISA   GLGGAV+++GV GT+RADWNPA+G+LV+PL+FLARFNG+AVIGF  FF+ LMIGGESAARR+GVP  YVLV VALLL+F AVVE LDH R+KR GA
Sbjct:  192 RLGGTTIHWGVLLGLAAVIGVHYLMSRTSLGLKLQIVGSNPRTAIHAGIDVRRLTFLAFAISAAFAGLGGAVDVMGVQGTIRADWNPAYGILVIPLIFLARFNGWAVIGFVFFFAVLMIGGESAARRMGVPTFYVLVQVALLLVFFAVVEMLDHARQKRRGA 353          
BLAST of mRNA_P-wetherbeei_contig19467.1.1 vs. uniprot
Match: A0A2E6P2S7_9GAMM (ABC transporter permease n=1 Tax=Acidiferrobacteraceae bacterium TaxID=2024893 RepID=A0A2E6P2S7_9GAMM)

HSP 1 Score: 218 bits (554), Expect = 1.730e-67
Identity = 113/159 (71.07%), Postives = 131/159 (82.39%), Query Frame = 1
Query:    1 PRLPETTIHSGVLIALAVVVLVHLMMTRTAFGLKLQVVGANPAAAIHAGLNVAKLTIATFAISAGLIGLGGAVEILGVWGTVRADWNPAFGLLVVPLVFLARFNGYAVIGFTLFFSALMIGGESAARRIGVPQNYVLVLVALLLIFLAVVEYLDHLRRK 477
            PRL +T IH GVL  +  V+ VH +MTRTAFGL+LQVVGANP AA+HAGLNV  LT   F +SA L G+GGAVEILGVWGTVRADWNPA+GLLVVPLVFLARF+G+  I F LFF+ LMIGGESA+RR+GVP  +VLVLV LLL+FLA+VEYLDH  R+
Sbjct:  191 PRLFDTIIHQGVLFGVVAVLGVHFLMTRTAFGLRLQVVGANPKAAVHAGLNVRILTYFAFGLSAALAGMGGAVEILGVWGTVRADWNPAYGLLVVPLVFLARFHGFGTIAFVLFFAVLMIGGESASRRLGVPTFFVLVLVGLLLMFLAIVEYLDHRWRQ 349          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19467.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4R6WUL0_9PROT3.860e-8987.73Nucleoside ABC transporter membrane protein n=1 Ta... [more]
A0A5C7NXZ6_9PROT4.300e-8180.63ABC transporter permease n=1 Tax=Rhodospirillaceae... [more]
A0A2E5PAE4_9PROT1.720e-7777.78ABC transporter permease n=2 Tax=Rhodospirillaceae... [more]
A0A2S6R4V8_9PROT3.140e-7777.78Uncharacterized protein n=1 Tax=Alphaproteobacteri... [more]
UPI0014223B885.980e-7778.53ABC transporter permease n=1 Tax=Pelagibius litora... [more]
A0A5J6N5S1_9PROT9.970e-7275.63ABC transporter permease n=2 Tax=Hypericibacter Ta... [more]
A0A2E9YMD7_9CHLR8.060e-6969.94ABC transporter permease n=3 Tax=root TaxID=1 RepI... [more]
A0A3C0TCF1_9GAMM1.260e-6768.99ABC transporter permease n=2 Tax=Gammaproteobacter... [more]
A0A1Y6CJD5_9HYPH1.730e-6768.52Nucleoside ABC transporter membrane protein n=1 Ta... [more]
A0A2E6P2S7_9GAMM1.730e-6771.07ABC transporter permease n=1 Tax=Acidiferrobactera... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19467contigP-wetherbeei_contig19467:2..493 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog1380391.JIAS01000012_gene3979
PFAMsBPD_transp_2
Model size492
Max annot lvl28211|Alphaproteobacteria
KEGG koko:K02057
KEGG TC3.A.1.2
KEGG ModuleM00221
Hectar predicted targeting categorysignal peptide
Exons1
Evalue2.85e-85
EggNOG OGsCOG4603@1|root,COG4603@2|Bacteria,1MX6V@1224|Proteobacteria,2TUGD@28211|Alphaproteobacteria,2JRJ1@204441|Rhodospirillales
DescriptionBranched-chain amino acid transport system / permease component
Cds size492
COG categoryS
BRITEko00000,ko00002,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186173.2210772-CDS-P-wetherbeei_contig19467:1..4931683186173.2210772-CDS-P-wetherbeei_contig19467:1..493Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19467 2..493 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19467.1.1prot_P-wetherbeei_contig19467.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19467 2..493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19467.1.1

>prot_P-wetherbeei_contig19467.1.1 ID=prot_P-wetherbeei_contig19467.1.1|Name=mRNA_P-wetherbeei_contig19467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=164bp
PRLPETTIHSGVLIALAVVVLVHLMMTRTAFGLKLQVVGANPAAAIHAGL
NVAKLTIATFAISAGLIGLGGAVEILGVWGTVRADWNPAFGLLVVPLVFL
ARFNGYAVIGFTLFFSALMIGGESAARRIGVPQNYVLVLVALLLIFLAVV
EYLDHLRRKRAGA*
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mRNA from alignment at P-wetherbeei_contig19467:2..493+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19467.1.1 ID=mRNA_P-wetherbeei_contig19467.1.1|Name=mRNA_P-wetherbeei_contig19467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig19467:2..493+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCGCCTGCCGGAGACCACCATCCATAGCGGCGTGCTGATCGCGCTGGC CGTTGTCGTGCTGGTGCATCTGATGATGACGCGCACGGCCTTCGGCCTGA AGCTCCAGGTGGTCGGCGCCAATCCTGCCGCCGCGATCCATGCGGGCCTT AATGTGGCAAAGCTCACCATCGCCACCTTTGCCATCAGCGCCGGCCTGAT CGGGCTGGGCGGTGCGGTCGAAATTCTCGGCGTCTGGGGCACGGTGCGCG CCGATTGGAACCCGGCCTTCGGGCTGCTGGTGGTGCCGCTGGTATTCCTG GCGCGGTTCAACGGCTATGCGGTGATCGGCTTCACGCTTTTCTTCTCGGC GCTGATGATCGGCGGCGAGAGCGCCGCGCGACGCATCGGTGTGCCGCAGA ATTATGTGCTGGTGCTGGTGGCCCTGCTGCTCATCTTCCTGGCGGTGGTC GAGTATCTCGACCATCTGCGCCGCAAGCGCGCGGGAGCTTGA
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Coding sequence (CDS) from alignment at P-wetherbeei_contig19467:2..493+

>mRNA_P-wetherbeei_contig19467.1.1 ID=mRNA_P-wetherbeei_contig19467.1.1|Name=mRNA_P-wetherbeei_contig19467.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=492bp|location=Sequence derived from alignment at P-wetherbeei_contig19467:2..493+ (Phaeothamnion wetherbeei SAG_119_79)
CCGCGCCTGCCGGAGACCACCATCCATAGCGGCGTGCTGATCGCGCTGGC
CGTTGTCGTGCTGGTGCATCTGATGATGACGCGCACGGCCTTCGGCCTGA
AGCTCCAGGTGGTCGGCGCCAATCCTGCCGCCGCGATCCATGCGGGCCTT
AATGTGGCAAAGCTCACCATCGCCACCTTTGCCATCAGCGCCGGCCTGAT
CGGGCTGGGCGGTGCGGTCGAAATTCTCGGCGTCTGGGGCACGGTGCGCG
CCGATTGGAACCCGGCCTTCGGGCTGCTGGTGGTGCCGCTGGTATTCCTG
GCGCGGTTCAACGGCTATGCGGTGATCGGCTTCACGCTTTTCTTCTCGGC
GCTGATGATCGGCGGCGAGAGCGCCGCGCGACGCATCGGTGTGCCGCAGA
ATTATGTGCTGGTGCTGGTGGCCCTGCTGCTCATCTTCCTGGCGGTGGTC
GAGTATCTCGACCATCTGCGCCGCAAGCGCGCGGGAGCTTGA
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