mRNA_P-wetherbeei_contig1946.9.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig1946.9.1
Unique NamemRNA_P-wetherbeei_contig1946.9.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
[Close]
BLAST of mRNA_P-wetherbeei_contig1946.9.1 vs. uniprot
Match: A0A151ZIV2_9MYCE (Dihydropteridine reductase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZIV2_9MYCE)

HSP 1 Score: 58.5 bits (140), Expect = 1.100e-8
Identity = 34/65 (52.31%), Postives = 45/65 (69.23%), Query Frame = 1 
Query:    1 AAGGWAGGSIS-ESYAGMVLDQMLTMNVQSSFLSAHLGARTLGTNGMLVLVGAQAALQPMPSMVA 192
            AAGGW GG+ + E Y G V  +M+ MN+ S+F +A LG++ L  NG+LVL GA AALQP   M+A
Sbjct:   74 AAGGWVGGNAADEGYLGSV-QKMIDMNLYSAFGTAFLGSKFLNENGLLVLTGANAALQPTSFMIA 137
[Close]
BLAST of mRNA_P-wetherbeei_contig1946.9.1 vs. uniprot
Match: A0A835Z238_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z238_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 7.270e-8
Identity = 28/63 (44.44%), Postives = 40/63 (63.49%), Query Frame = 1 
Query:    1 AAGGWAGGSISESYAGMVLDQMLTMNVQSSFLSAHLGARTLGTNGMLVLVGAQAALQPMPSMV 189
            AAGGW GG + +       + M  +N +++ +SAH+ +  L  +GMLVL GAQAALQP P M+
Sbjct:   34 AAGGWQGGGMKDKGVLASAEAMWEVNARTALVSAHVASSMLNDDGMLVLTGAQAALQPTPGMI 96
[Close]
BLAST of mRNA_P-wetherbeei_contig1946.9.1 vs. uniprot
Match: A0A8H7RY18_9FUNG (Uncharacterized protein n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7RY18_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 1.890e-7
Identity = 31/62 (50.00%), Postives = 38/62 (61.29%), Query Frame = 1 
Query:    4 AGGWAGGSISESYAGMVLDQMLTMNVQSSFLSAHLGARTLGTNGMLVLVGAQAALQPMPSMV 189
            AGGWAGG+ +        D ML  +V SS ++A L AR L  NG+LVL GA AAL P P M+
Sbjct:  109 AGGWAGGNAASKNFIKNSDLMLKQSVSSSLIAARLAARHLDDNGLLVLTGALAALNPTPGMI 170
[Close]
BLAST of mRNA_P-wetherbeei_contig1946.9.1 vs. uniprot
Match: A0A0L0SET2_ALLM3 (Uncharacterized protein n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SET2_ALLM3)

HSP 1 Score: 53.9 bits (128), Expect = 6.010e-7
Identity = 25/62 (40.32%), Postives = 40/62 (64.52%), Query Frame = 1 
Query:    4 AGGWAGGSISESYAGMVLDQMLTMNVQSSFLSAHLGARTLGTNGMLVLVGAQAALQPMPSMV 189
            AGGW GG   ++     ++  +  +VQSS ++AH+ A+ L  NG++VL G+QA+L P P M+
Sbjct:   80 AGGWVGGHAGDASFVQSVETSVAQSVQSSAVAAHIAAKRLNPNGLVVLTGSQASLSPTPGMI 141
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig1946.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A151ZIV2_9MYCE1.100e-852.31Dihydropteridine reductase n=1 Tax=Tieghemostelium... [more]
A0A835Z238_9STRA7.270e-844.44Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8H7RY18_9FUNG1.890e-750.00Uncharacterized protein n=1 Tax=Mucor circinatus T... [more]
A0A0L0SET2_ALLM36.010e-740.32Uncharacterized protein n=1 Tax=Allomyces macrogyn... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig1946contigP-wetherbeei_contig1946:6063..6257 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog42099.EPrPV00000020560
PFAMsadh_short,adh_short_C2
Model size195
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.05e-11
EggNOG OGsCOG1028@1|root,KOG4022@2759|Eukaryota,1MBPX@121069|Pythiales
DescriptionDihydropteridine reductase. Source PGD
Cds size195
COG categoryE
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186173.076196-CDS-P-wetherbeei_contig1946:6062..62571683186173.076196-CDS-P-wetherbeei_contig1946:6062..6257Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig1946 6063..6257 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig1946.9.1prot_P-wetherbeei_contig1946.9.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig1946 6063..6257 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig1946.9.1

>prot_P-wetherbeei_contig1946.9.1 ID=prot_P-wetherbeei_contig1946.9.1|Name=mRNA_P-wetherbeei_contig1946.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=65bp
AAGGWAGGSISESYAGMVLDQMLTMNVQSSFLSAHLGARTLGTNGMLVLV
GAQAALQPMPSMVA*
back to top

mRNA from alignment at P-wetherbeei_contig1946:6063..6257+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig1946.9.1 ID=mRNA_P-wetherbeei_contig1946.9.1|Name=mRNA_P-wetherbeei_contig1946.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig1946:6063..6257+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCAGGCGGCTGGGCGGGTGGAAGCATCTCAGAGAGCTACGCAGGGAT
GGTCTTGGATCAAATGCTGACGATGAACGTTCAGAGCTCTTTCCTCTCAG
CCCACCTGGGGGCACGCACTTTAGGAACGAACGGCATGCTGGTCTTGGTC
GGAGCTCAGGCGGCGCTTCAGCCCATGCCGAGCATGGTCGCGTGA
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig1946:6063..6257+

>mRNA_P-wetherbeei_contig1946.9.1 ID=mRNA_P-wetherbeei_contig1946.9.1|Name=mRNA_P-wetherbeei_contig1946.9.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=195bp|location=Sequence derived from alignment at P-wetherbeei_contig1946:6063..6257+ (Phaeothamnion wetherbeei SAG_119_79)
GCCGCAGGCGGCTGGGCGGGTGGAAGCATCTCAGAGAGCTACGCAGGGAT
GGTCTTGGATCAAATGCTGACGATGAACGTTCAGAGCTCTTTCCTCTCAG
CCCACCTGGGGGCACGCACTTTAGGAACGAACGGCATGCTGGTCTTGGTC
GGAGCTCAGGCGGCGCTTCAGCCCATGCCGAGCATGGTCGCGTGA
back to top