mRNA_P-wetherbeei_contig19440.1.1 (mRNA) Phaeothamnion wetherbeei SAG_119_79

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-wetherbeei_contig19440.1.1
Unique NamemRNA_P-wetherbeei_contig19440.1.1
TypemRNA
OrganismPhaeothamnion wetherbeei SAG_119_79 (Phaeothamnion wetherbeei SAG_119_79)
Homology
BLAST of mRNA_P-wetherbeei_contig19440.1.1 vs. uniprot
Match: A0A6L8DAM2_9GAMM (Glucose 1-dehydrogenase n=4 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A6L8DAM2_9GAMM)

HSP 1 Score: 70.1 bits (170), Expect = 5.430e-13
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    1 MAGRYQGRVAVITGGASGIGAATVRKFVGEGAKVVIADMQEEMGKKLAAEL 153
            M+GR  G+VAVITGGASG+GAATVRKFV EGA+VVIAD+QEE G+ LA ++
Sbjct:    1 MSGRLGGKVAVITGGASGMGAATVRKFVAEGARVVIADVQEEKGRALAEDI 51          
BLAST of mRNA_P-wetherbeei_contig19440.1.1 vs. uniprot
Match: A0A3C1FTE3_9PROT (Uncharacterized protein n=3 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A3C1FTE3_9PROT)

HSP 1 Score: 69.3 bits (168), Expect = 1.110e-12
Identity = 38/48 (79.17%), Postives = 42/48 (87.50%), Query Frame = 1
Query:   10 RYQGRVAVITGGASGIGAATVRKFVGEGAKVVIADMQEEMGKKLAAEL 153
            R  G+VAVITGGASGIGAATVRKFV EGA+VVIADMQ EMG+ LA E+
Sbjct:   27 RLAGQVAVITGGASGIGAATVRKFVAEGARVVIADMQAEMGQALADEI 74          
BLAST of mRNA_P-wetherbeei_contig19440.1.1 vs. uniprot
Match: UPI000B451107 (SDR family oxidoreductase n=1 Tax=Indiicoccus explosivorum TaxID=1917864 RepID=UPI000B451107)

HSP 1 Score: 68.2 bits (165), Expect = 1.760e-12
Identity = 36/48 (75.00%), Postives = 41/48 (85.42%), Query Frame = 1
Query:   10 RYQGRVAVITGGASGIGAATVRKFVGEGAKVVIADMQEEMGKKLAAEL 153
            R +G+VAV+TGGASGIG ATVRKF+ EGAKVVIAD  EE G+KLA EL
Sbjct:    2 RLEGKVAVVTGGASGIGEATVRKFIQEGAKVVIADFNEEAGRKLADEL 49          
BLAST of mRNA_P-wetherbeei_contig19440.1.1 vs. uniprot
Match: A0A4S4ZYX8_9ACTN (Glucose 1-dehydrogenase n=1 Tax=Nocardioides sp. TaxID=35761 RepID=A0A4S4ZYX8_9ACTN)

HSP 1 Score: 67.4 bits (163), Expect = 4.740e-12
Identity = 37/51 (72.55%), Postives = 42/51 (82.35%), Query Frame = 1
Query:    1 MAGRYQGRVAVITGGASGIGAATVRKFVGEGAKVVIADMQEEMGKKLAAEL 153
            M GR  GRVAV+TGGASGIGAATVR+FV EGAKVVIAD+Q + G+ L  EL
Sbjct:    1 MTGRLSGRVAVVTGGASGIGAATVRRFVDEGAKVVIADVQVDAGEILVKEL 51          
BLAST of mRNA_P-wetherbeei_contig19440.1.1 vs. uniprot
Match: A0A6I2WMA8_9ACTN (Glucose 1-dehydrogenase n=7 Tax=root TaxID=1 RepID=A0A6I2WMA8_9ACTN)

HSP 1 Score: 67.4 bits (163), Expect = 4.820e-12
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 MAGRYQGRVAVITGGASGIGAATVRKFVGEGAKVVIADMQEEMGKKLAAEL 153
            M+GR  G V+V+TGGASGIGAATVR+FV EGAKVVI D+Q+  G+ LAAEL
Sbjct:    1 MSGRLDGMVSVVTGGASGIGAATVRRFVAEGAKVVICDIQDAPGEALAAEL 51          
BLAST of mRNA_P-wetherbeei_contig19440.1.1 vs. uniprot
Match: A0A2U2BXP0_9PROT (2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase n=1 Tax=Marinicauda salina TaxID=2135793 RepID=A0A2U2BXP0_9PROT)

HSP 1 Score: 67.0 bits (162), Expect = 7.060e-12
Identity = 36/49 (73.47%), Postives = 40/49 (81.63%), Query Frame = 1
Query:    1 MAGRYQGRVAVITGGASGIGAATVRKFVGEGAKVVIADMQEEMGKKLAA 147
            MAGR  G+VAVITGGASGIG AT   FV EGAKVV+AD+QEE G+K AA
Sbjct:    1 MAGRLDGKVAVITGGASGIGKATAELFVAEGAKVVVADVQEEAGEKFAA 49          
BLAST of mRNA_P-wetherbeei_contig19440.1.1 vs. uniprot
Match: A0A1I1JPV1_9ACTN (NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family n=3 Tax=Actinomycetia TaxID=1760 RepID=A0A1I1JPV1_9ACTN)

HSP 1 Score: 66.6 bits (161), Expect = 7.800e-12
Identity = 35/51 (68.63%), Postives = 41/51 (80.39%), Query Frame = 1
Query:    1 MAGRYQGRVAVITGGASGIGAATVRKFVGEGAKVVIADMQEEMGKKLAAEL 153
            MAGR +GRVAV+TGG SGIG ATVR+FV EGAKVV+ D+ +E GK L  EL
Sbjct:    1 MAGRIEGRVAVVTGGCSGIGLATVRRFVAEGAKVVVGDIADEAGKVLVDEL 51          
BLAST of mRNA_P-wetherbeei_contig19440.1.1 vs. uniprot
Match: A0A1E7PSS1_9CORY (3-alpha-hydroxysteroid dehydrogenase n=2 Tax=unclassified Corynebacterium TaxID=2624378 RepID=A0A1E7PSS1_9CORY)

HSP 1 Score: 66.6 bits (161), Expect = 7.950e-12
Identity = 35/48 (72.92%), Postives = 42/48 (87.50%), Query Frame = 1
Query:   10 RYQGRVAVITGGASGIGAATVRKFVGEGAKVVIADMQEEMGKKLAAEL 153
            R++GRVA++TGGASG+GAA  R FV EGAKVVIAD+ EEMG+KLA EL
Sbjct:    3 RFEGRVALVTGGASGMGAADCRLFVEEGAKVVIADLNEEMGQKLADEL 50          
BLAST of mRNA_P-wetherbeei_contig19440.1.1 vs. uniprot
Match: A0A7C7U1M0_9DELT (SDR family oxidoreductase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7C7U1M0_9DELT)

HSP 1 Score: 66.6 bits (161), Expect = 9.290e-12
Identity = 36/49 (73.47%), Postives = 42/49 (85.71%), Query Frame = 1
Query:    7 GRYQGRVAVITGGASGIGAATVRKFVGEGAKVVIADMQEEMGKKLAAEL 153
            GR +G+VAVITGGASGIG ATVR+F  EGA+VVIAD+QE+ GK LA EL
Sbjct:    2 GRVEGKVAVITGGASGIGEATVRRFCEEGARVVIADIQEDRGKALAEEL 50          
BLAST of mRNA_P-wetherbeei_contig19440.1.1 vs. uniprot
Match: A0A562CFN4_9ACTN (NAD(P)-dependent dehydrogenase (Short-subunit alcohol dehydrogenase family) n=1 Tax=Nocardioides sp. J9 TaxID=935844 RepID=A0A562CFN4_9ACTN)

HSP 1 Score: 66.6 bits (161), Expect = 9.790e-12
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1
Query:   10 RYQGRVAVITGGASGIGAATVRKFVGEGAKVVIADMQEEMGKKLAAEL 153
            R+ GRVAV+TGGASGIGAAT+R+F  EGA VVIAD+QE  GK+LA EL
Sbjct:   12 RFAGRVAVVTGGASGIGAATIRRFHAEGASVVIADVQEVAGKELATEL 59          
The following BLAST results are available for this feature:
BLAST of mRNA_P-wetherbeei_contig19440.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6L8DAM2_9GAMM5.430e-1372.55Glucose 1-dehydrogenase n=4 Tax=Gammaproteobacteri... [more]
A0A3C1FTE3_9PROT1.110e-1279.17Uncharacterized protein n=3 Tax=Alphaproteobacteri... [more]
UPI000B4511071.760e-1275.00SDR family oxidoreductase n=1 Tax=Indiicoccus expl... [more]
A0A4S4ZYX8_9ACTN4.740e-1272.55Glucose 1-dehydrogenase n=1 Tax=Nocardioides sp. T... [more]
A0A6I2WMA8_9ACTN4.820e-1270.59Glucose 1-dehydrogenase n=7 Tax=root TaxID=1 RepID... [more]
A0A2U2BXP0_9PROT7.060e-1273.472,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydroge... [more]
A0A1I1JPV1_9ACTN7.800e-1268.63NAD(P)-dependent dehydrogenase, short-chain alcoho... [more]
A0A1E7PSS1_9CORY7.950e-1272.923-alpha-hydroxysteroid dehydrogenase n=2 Tax=uncla... [more]
A0A7C7U1M0_9DELT9.290e-1273.47SDR family oxidoreductase n=1 Tax=Myxococcales bac... [more]
A0A562CFN4_9ACTN9.790e-1272.92NAD(P)-dependent dehydrogenase (Short-subunit alco... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-wetherbeei_contig19440contigP-wetherbeei_contig19440:160..312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Phaeothamnion wetherbeei SAG_119_79 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog935866.JAER01000008_gene1018
PFAMsadh_short_C2
Model size153
Max annot lvl201174|Actinobacteria
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue1.61e-12
EggNOG OGsCOG1028@1|root,COG1028@2|Bacteria,2GNIN@201174|Actinobacteria,4DT89@85009|Propionibacteriales
DescriptionKR domain
Cds size153
COG categoryIQ
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1683186172.3890562-CDS-P-wetherbeei_contig19440:159..3121683186172.3890562-CDS-P-wetherbeei_contig19440:159..312Phaeothamnion wetherbeei SAG_119_79CDSP-wetherbeei_contig19440 160..312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-wetherbeei_contig19440.1.1prot_P-wetherbeei_contig19440.1.1Phaeothamnion wetherbeei SAG_119_79polypeptideP-wetherbeei_contig19440 160..312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-wetherbeei_contig19440.1.1

>prot_P-wetherbeei_contig19440.1.1 ID=prot_P-wetherbeei_contig19440.1.1|Name=mRNA_P-wetherbeei_contig19440.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=polypeptide|length=51bp
MAGRYQGRVAVITGGASGIGAATVRKFVGEGAKVVIADMQEEMGKKLAAE
L
back to top

mRNA from alignment at P-wetherbeei_contig19440:160..312-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-wetherbeei_contig19440.1.1 ID=mRNA_P-wetherbeei_contig19440.1.1|Name=mRNA_P-wetherbeei_contig19440.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=mRNA|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig19440:160..312- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGGAAGATATCAGGGACGCGTGGCGGTCATAACCGGCGGGGCCAG CGGCATCGGGGCTGCGACCGTGCGCAAATTCGTGGGCGAGGGCGCGAAAG TCGTCATCGCCGACATGCAGGAGGAAATGGGCAAAAAGCTGGCCGCCGAG CTG
back to top

Coding sequence (CDS) from alignment at P-wetherbeei_contig19440:160..312-

>mRNA_P-wetherbeei_contig19440.1.1 ID=mRNA_P-wetherbeei_contig19440.1.1|Name=mRNA_P-wetherbeei_contig19440.1.1|organism=Phaeothamnion wetherbeei SAG_119_79|type=CDS|length=153bp|location=Sequence derived from alignment at P-wetherbeei_contig19440:160..312- (Phaeothamnion wetherbeei SAG_119_79)
ATGGCTGGAAGATATCAGGGACGCGTGGCGGTCATAACCGGCGGGGCCAG
CGGCATCGGGGCTGCGACCGTGCGCAAATTCGTGGGCGAGGGCGCGAAAG
TCGTCATCGCCGACATGCAGGAGGAAATGGGCAAAAAGCTGGCCGCCGAG
CTG
back to top